理化因子诱导的CP43和CP47结构与功能变化规律的研究

CP43和CP47是PSII中位于类囊体膜上的两种内周天线色素蛋白复合体，它们都是由六个跨膜的α-螺旋和五个膜外环组成。CP43和CP47的主要功能是把光系统II(PSII)外周天线色素蛋白复合体(LHCII)吸收的能量传给反应中心(RC)，从而引起光化学反应。因此，研究CP43和CP47的结构与功能对于揭示植物光合作用高效吸能、传能的分子机理具有重要意义。由于CP43和CP47的分离纯化比较困难，所以相对于其它的光合膜蛋白来说，人们对CP43和CP47的研究比较少。在本文中，我们在分离、纯化CP43和CP47的基础上，采用多种光谱学和波谱学技术对CP43和CP47在GuHCl和高温作用下的变性过程及其结构与功能的变化规律进行了比较深入的研究，获得了如下结果： 1. CP43和CP47膜外区的结构特点及盐酸胍(GuHCl)引起的变性研究 我们用荧光光谱、园二色(CD)光谱研究了GuHCl引起CP43和CP47的变性过程及其膜外区的结构特点。研究发现：CP43和CP47的膜外区具有一定的有序结构，而不是一种没有规则的伸展状态;和CP43相比，CP47的三级结构及Chl a的微环境对GuHCl更敏感。在GuHCl作用下，从β-Car到Chl a的能量传递变化和三级结构的变化密切相关，而与二级结构变化的相关性则较小;和大多数水溶性蛋白不一样，CP43和CP47对GuHCl变性有一定的抵抗力，而且其变性过程不表现为二态过程，这些都是膜蛋白的特点。 2 CP43和CP47中与芳香族氨基酸有关的能量传递研究 我们用吸收光谱、荧光光谱并参照PSII的3.5 Å的晶体结构分析结果研究了CP43和CP47中与芳香族氨基酸有关的能量传递。发现：和水溶性蛋白不一样，CP43和CP47中的酪氨酸(Tyrs)并不能有效的把其能量传给色氨酸(Trps);CP43和CP47中的芳香族氨基酸能通过Föster机制和Dexter机制把其能量传给Chl a，并且CP47中的传递效率要大于CP43;在CP47中Föster机制是芳香族氨基酸和Chl a之间能量传递的主要方式，而在CP43中Dexter机制则是主要方式。这些结果也暗示了，太阳光中的紫外辐射对植物来说除了其伤害作用以外也有一定的益处。 3 GuHCl诱导CP43和CP47变性的太赫兹（THz）光谱研究 THz时域光谱技术(THz-TDS)是研究分子构型状态的一个新工具。近年来，已被应用于物理或化学分子的研究中。我们首次把这个技术应用到光合膜蛋白CP43和CP47的GuHCl变性研究上。研究发现，在小于1.5 THz时，THz吸收光谱强度随着频率的增加而增加可以看作是蛋白质变性的标志。在GuHCl作用下频域光谱中出现的1.8 THz峰应来源于Chl a和GuHCl之间的相互作用。实验结果表明，THz光谱是区分蛋白分子的不同构型状态以及监测蛋白变性过程的有力工具。 4 CP43热变性的傅立叶变换红外光谱和THz光谱研究 我们用傅立叶变换红外光谱技术(FT-IR)、SDS聚丙稀凝胶电泳(SDS-PAGE)和THz光谱技术对CP43的热变性过程进行了研究。结果表明，在高温处理下，CP43的二级结构发生了变化，且其跃变点发生在59℃。随着温度的逐渐升高，CP43先发生凝集，接着又发生降解;CP43的低频振动模随着温度的升高和分子量的减小也发生变化。我们还证实THz光谱技术在监测膜蛋白的热变性时既有它的优越性，也存在一些不足之处。这些结果为THz-TDS技术在生物样品上的应用提供了基本的资料，并完善了相关的理论。

Technical report on the environmental monitoring of the cage area at the Source of the Nile (SON) Fish Farm for quarter 2: April-June 2011

Source of the Nile Fish farm (SON) is located at Bugungu area in Napoleon Gulf, northern Lake Victoria. The proprietors of the farm requested for technical assistance of NaFIRRI to undertake regular environment monitoring of the cage site as is mandatory under the NEMA conditions. Thus, NAFIRRI undertakes quarterly environment surveys in the cage area covering selected physical-chemical factors i.e. water column depth, water transparency, water column temperature, dissolved oxygen, pH and conductivity; nutrient status, algal and invertebrate communities (zooplankton and macro-benthos) as well as fish community. The first environmental survey was undertaken in February 2011. Results/observations made during the second quarter (April-June 2011) field survey are presented in this technical report along with a scientific interpretation and discussion of the results with reference to possible impacts of the cage facilities on the water environment and the different aquatic biota in and around the cages including natural fish communities.

Environment monitoring technical report for the SON cage fish culture site at Bugungu, Napoleon Gulf, northern Lake Victoria, November 2013

Source of the Nile Fish farm (SON) is located at Bugungu area in Napoleon Gulf, northern Lake Victoria. The proprietors of the farm and the National Fisheries Resources Research Institute (NaFIRRI) have an established collaborative arrangement where NaFIRRI provides technical back‐stopping to enable quarterly environment monitoring of the cage site as a mandatory requirement of the National Environment Management Authority (NEMA). The agreed study areas are selected physical‐chemical factors (water depth, water transparency/secchi depth, water temperature, dissolved oxygen, pH, conductivity, and nutrient status), algal community (including primary production), aquatic invertebrates (zooplankton and macro‐benthos) and the fish community. This report presents field observations made during the fourth quarter (October‐December) field survey undertaken during December 2013; along with scientific interpretation and discussion of the results in reference to possible impacts of the cage facility to the water environment quality and aquatic biota.

Environment monitoring technical report for the SON cage fish culture site at Bugungu, Napoleon Gulf, northern Lake Victoria, June 2013

Source of the Nile Fish farm (SON) is located at Bugungu area in Napoleon Gulf, northern Lake Victoria. The proprietors of the farm requested NaFIRRI to provide technical assistance to undertake regular environment monitoring of the cage site as a mandatory requirement under the NEMA conditions. NAFIRRI agreed to undertake regular environment surveys in the cage area covering selected physical‐chemical factors (water column depth, water transparency, water column temperature, dissolved oxygen, pH, conductivity, nutrient status), algal aquatic invertebrates (micro‐invertebrates/zooplankton and macro‐benthos) and fish communities. During the year 2013, it was agreed with management to undertake quarterly environment monitoring surveys. However, the first quarter (January‐March 2013) survey was missed out due to late decision. The present report therefore covers the survey taken during the second quarter (April‐June 2013). Results/observations made are presented in this technical report along with a scientific interpretation and discussion of the results with reference to possible impacts of the cage facilities to the water environment and aquatic biota.

Environment monitoring technical report for the SON cage fish culture site at Bugungu, Napoleon Gulf, northern Lake Victoria, August 2014

Source of the Nile Fish farm (SON) is located at Bugungu area in Napoleon Gulf, northern Lake Victoria. The proprietors of the farm and the National Fisheries Resources Research Institute (NaFIRRI) have an established collaborative arrangement where NaFIRRI provides technical back-stopping to enable quarterly environment monitoring of the cage site; a mandatory requirement of the National Environment Management Authority (NEMA). The agreed study areas are physical-chemical factors (water depth, water transparency/secchi depth, water temperature, dissolved oxygen, BOO, pH, conductivity), and selected nutrients), algal community (including primary production), aquatic invertebrates (zooplankton and macrobenthos) and the fish community. This report presents field observations made during the third quarter (July-September) field survey undertaken during August 2014; along with scientific interpretation and discussion of the results in reference to possible impacts of the cage facility to the water environment quality and aquatic biota.

Technical report on the environmental monitoring of the cage area at the Source of the Nile (SON) Fish Farm for quarter 3: July-September 2011

Source of the Nile Fish farm (SON) is located at Bugungu area in Napoleon Gulf, northern Lake Victoria. The proprietors of the farm requested for technical assistance of NaFIRRI to undertake regular environment monitoring of the cage site as is mandatory under the NEMA conditions. NAFIRRI agreed to undertake quarterly environment surveys in the cage area covering selected physical-chemical factors Like water column depth, water transparency, water column temperature, dissolved oxygen, pH and conductivity; nutrient status, algal and invertebrate communities (microinvertebrates/zooplankton and macro-invertebrates/macro-benthos) as well as fish community. The first quarter survey was undertaken in February 2011; the second in May 2011 and the third quarter survey, which is the subject of this report, in September 2011. Results/observations made are presented in this technical report along with a scientific interpretation and discussion of the results with reference to possible impacts of the cage facilities to the water environment and aq-uatic biota, including the natural fish community at and around the cage site.

SON bi‐annual environment monitoring technical report for the cage culture site at Bugungu, northern Lake Victoria, June 2012

Source of the Nile Fish farm (SON) is located at Bugungu area in Napoleon Gulf, northern Lake Victoria. The proprietors of the farm requested NaFIRRI to provide technical assistance to undertake regular environment monitoring of the cage site as is mandatory under the NEMA conditions. NAFIRRI agreed to undertake regular environment surveys in the cage area covering selected physical‐chemical factors i.e. water column depth, water transparency, water column temperature, dissolved oxygen, pH, conductivity, redox potential and turbidity; nutrient status, algal and invertebrate communities (micro‐invertebrates/zooplankton and macro‐invertebrates/macro‐benthos) as well as fish community. The first year‐round quarterly surveys were completed for the year 2011. It was decided by SON management to change the frequency of the monitoring surveys to biannual starting in the year 2012 and the first such survey, which is the subject of this report, was undertaken in June 2012. Results/observations made are presented in this technical report along with a scientific interpretation and discussion of the results with reference to possible impacts of the cage facilities to the water environment and aquatic biota. SON

Environment monitoring technical report for the SON cage fish culture site at Bugungu, Napoleon Gulf, northern Lake Victoria, March 2014

Source of the Nile Fish farm (SON) is located at Bugungu area in Napoleon Gulf, northern Lake Victoria. The proprietors of the farm and the National Fisheries Resources Research Institute (NaFIRRI) have an established collaborative arrangement where NaFIRRI provides technical back‐stopping to enable quarterly environment monitoring of the cage site as a mandatory requirement of the National Environment Management Authority (NEMA). The agreed study areas are selected physical‐chemical factors (water depth, water transparency/secchi depth, water temperature, dissolved oxygen, pH, conductivity, and nutrient status), algal community (including primary production), aquatic invertebrates (zooplankton and macro‐benthos) and the fish community. This report presents field observations made during the first quarter (January‐March) field survey undertaken during March 2014; along with scientific interpretation and discussion of the results in reference to possible impacts of the cage facility to the water environment quality and aquatic biota. The

Eco-biology of Mastacembelus pancalus (Ham.) and their distribution in different water bodies

The eco-biological of the spiny eel, Mastacembelus pailcalus in the river Padma, adjacent flood plains and ponds were influenced by various physico-chemical factors such as water temperature, water transparency, pH, dissolved oxygen, free carbon dioxide and alkalinity. Flood plain areas are the best habitat for the M. pancalus with maximum abundance.

Technical report on the environmental monitoring of the cage area at the Source of the Nile (SON) Fish Farm for quarter 2: April-June 2015

Source of the Nile Fish farm (SON) is located at Bugungu area in Napoleon Gulf, northern Lake Victoria. The proprietors of the farm have a collaborative arrangement with NaFIRRI to undertake quarterly environment monitoring of the cage site as is mandatory under the NEMA conditions. The monitoring surveys cover selected physical-chemical factors i.e. water column depth, water transparency, water column temperature, dissolved oxygen, pH and conductivity; nutrient status, algal and invertebrate communities (micro-invertebrates/zooplankton and macroinvertebrates/ macro-benthos) as well as fish community. The second quarter survey for the calendar year 2015, which is the subject of this report, was undertaken in June 2015. Results/observations made are presented in this technical report along with a scientific interpretation and discussion of the results with reference to possible impacts of the cage facilities to the water environment and aquatic biota.

Past and present limnological investigations in Uganda: an overview

The limnological investigations in Uganda freshwaters which were started in the 1920s looked into: the origins, the changing geological and climatic factors which gave rise to the characteristic inland waters; the primary production; the constituent small aquatic organisms and their ecology; and their bordering swamps. Most of them were formed immediately after the formation of the great Western rift valley. Almost all the inland waters in Uganda are typical tropical freshwaters which, because of their relative shallowness, experience rather frequent wind stirrings and therefore nutrient circulation which would make them relatively productive. Many physical, biological and chemical factors come into play to finally determine this. The present investigations continue to bridge the gaps which were left and also to collect the baseline data needed to later manage, monitor and control any possible pollution risks.

Changes in benthic algal communities following construction of a run-of-river dam

Ecological responses to dam construction are poorly understood, especially for downstream benthic algal communities. We examined the responses of benthic algal communities in downstream reaches of a tributary of the Xiangxi River, China, to the construction of a small run-of-river dam. From February 2003 to August 2006, benthic algae, chemical factors, and habitat characteristics were monitored upstream and downstream of the dam site. This period spanned 6 mo before dam construction and 37 mo after dam construction. Benthic algal sampling yielded 199 taxa in 59 genera that belonged to Bacillariophyta, Chlorophyta, and Cyanophyta. Some physical factors (flow velocity, water depth, and channel width) and 3 algal metrics (diatom species richness, Margalef diversity, and % erect individuals) were significantly affected by the dam construction, whereas chemical factors (e.g., NH4-N, total N, SiO2) were not. Nonmetric multidimensional scaling (NMS) ordinations showed that overall algal assemblage structure downstream of the dam sites was similar to that of upstream control sites before dam construction and for 1 year after dam construction (p > 0.05). However, sites belonging to upstream and downstream reaches were well separated on NMS axis 1 during the 2(nd) and 3(rd) years after dam construction. Our results suggest that impacts of dam construction on benthic algal communities took 2 to 3 y to emerge. Further development of a complete set of indicators is needed to address the impact of small-dam construction. Our observations underscore the need for additional studies that quantify ecological responses to dam construction over longer time spans.

Environmental mechanism of change in cyanobacterial species composition in the northeastern part of Lake Dianchi (China)

Environmental mechanism of change in cyanobacterial species composition in the northeastern part of Lake Dianchi (also called Macun Bay and Haidong Bay) was studied using canonical correlation analysis (CCA), but also bottom-up control and top-down control were fully discussed. Results from CCA suggest: (1) the abundance and dominance of Microcystis aeruginosa in Macun Bay and Haidong Bay are influenced by total phosphorus (TP), nitrate (NO3--N), nitrite (NO2--N), dissolved oxygen (DO) and water temperature (WT); (2) water temperature has a positive correlation with the abundance of M. aeruginosa and it also has negative correlations with the abundances of Anabaena flos-aquae and Aphanizomenonon flos-aquae; and (3) abundances of both Anabaena flos-aquae and Aphanizomenon flos-aquae have positive correlations with ammonia-N (NH4+-N). Furthermore, cyanobacterial species composition has no significant correlations with light and size-fractioned iron in this study. Grazers, cyanophages and viruses were able to control cyanobacterial blooms and change the composition of cyanobacterial species. Though we studied physical and chemical factors intensely enough, we still are not able to predict the change in the composition of cyanobacterial blooms, because of plankton system in a chaotic behavior.

Contributions of phosphatase and microbial activity to internal phosphorus loading and their relation to lake eutrophication

Phosphatase may accelerate the process of lake eutrophication through improving phosphorus bioavailability. This mechanism was studied in three Chinese eutrophic shallow lakes (Lake Taihu, Lake Longyang,and Lake Lianhua). Phosphatase activity was related to the concentration of soluble reactive phosphorus (SRP) and chlorophyll a. Stability of dissolved phosphatase in reverse micelles may be attributed to molecular size, conformation and active residues of the enzyme. At the site with Microcystis bloomed in Lake Taihu, dissolved phosphatase activity was higher and more stable in micelles, SRP concentrations were lower in interstitial water, the contents of different forms of phosphorus and the amounts of aerobic bacteria were lower while respiration efficiency was higher in sediments. Phosphobacteria, both inorganic and organic and other microorganisms were abundant in surface water but rare in sediments. Therefore, internal phosphorus may substantially flux into water column by enzymatic hydrolysis and anaerobic release, together with mobility of bacteria, thereby initiating the bloom. In short, biological mechanism may act in concert with physical and chemical factors to drive the internal phosphorus release and accelerate lake eutrophication.

Relacje między zgrupowaniami ameb skorupkowych, roślinnością i parametrami siedliskowymi torfowisk minerotroficznych Wielkopolski

Wydział Biologii: Instytut Biologii Środowiska/Zakład Hydrobiologii