Biofilmbildung bei Pflanzen-assoziierten Bakterien der Gattung Methylobacterium und molekulargenetisch-physiologische Charakterisierung eines neuen Marchantia-Isolats (Mtb. sp. JT1)

Bakterien existieren bevorzugt in Biofilmen. Das Zusammenleben in diesen Gemeinschaften bietet den einzelnen Mikroben einen wirksamen Schutz und ermöglicht die Ausbildung langfristiger, synergistischer Wechselwirkungen, die mit multizellulären Systemen verglichen werden können. Biofilme bestehen aus Mikrooganismen-Populationen, die sich an Grenzflächen ansammeln und typischerweise von einer Matrix aus extrazellulären polymeren Substanzen umgeben sind. Auch auf Pflanzen-Oberflächen bilden viele Bakterien Biofilme, um ihre Überlebenswahrscheinlichkeit zu erhöhen. In dieser Arbeit wurde die Biofilmbildung bei Pflanzen-assoziierten Bakterien der Gattung Methylobacterium (Mtb.) untersucht, wobei molekular- und mikrobiologische sowie mikroskopische Techniken eingesetzt wurden. Es zeigte sich, dass alle untersuchten Vertreter der Gattung Methylobacterium in unterschiedlichem Ausmaß Biofilme bilden. Die Ausprägung ist dabei Taxon (bzw. Isolat)-spezifisch und vor allem von der Stickstoff-Verfügbarkeit abhängig. Jedoch spielen auch andere Umweltfaktoren, wie die Versorgung der Zellen mit Phosphat und die Zelldichte, bei der Ausbildung der überzellulären Einheiten eine wichtige Rolle. Die Matrix der Biofilme wird meist durch ein fibrilläres Netzwerk gebildet. Dabei handelt es sich um Heteropolysaccharide, die von den Bakterien synthetisiert und sezerniert werden. Einige Isolate bilden zusätzlich zahlreiche Fimbrien (Auswüchse), durch die sie an andere Zellen oder Oberflächen binden können. Im zweiten Teil dieser Arbeit wurden mehrere neue Methylobacterium-Isolate physiologisch und molekulargenetisch charakterisiert (Nährstoffverwertung, DNA-Sequenzen verschiedener Gene, phylogenetische Analysen usw.). Im Vordergrund stand hierbei der von einer urtümlichen Landpflanze, dem Lebermoos (Marchantia polymorpha), isolierte Stamm Mtb. sp. JT1. Dabei zeigten sich deutliche Unterschiede in der Morphologie und Physiologie des Bakterienstamms JT1 und dem nahe verwandten Stamm 5b.2.20 zu den bereits beschriebenen Taxa der Gattung, so dass eine Spezies-Neubeschreibung erforderlich war. Als Artname wurde aufgrund der außergewöhnlichen Oberflächenstrukturen Mtb. fimbriae sp. nov. eingeführt. Auch andere Methylobakterien (unter anderem Isolat Mtb. sp. F3.2, isoliert vom Laubmoos Funaria hygrometrica) stellen wahrscheinlich Vertreter einer neue Spezies dar (Artname Mtb. funariae sp. nov.). Jedoch zeigen Mtb. fimbriae und Mtb. funariae nur geringe physiologische und morphologische Unterschiede und konnten auf Grundlage umfassender DNA-DNA-Hybridisierungs-Studien nicht eindeutig voneinander abgegrenzt werden.

Development of a fermentation system to model sessile bacterial populations in the human colon

A fermentation system was designed to model the human colonic microflora in vitro. The system provided a framework of mucin beads to encourage the adhesion of bacteria, which was encased within a dialysis membrane. The void between the beads was inoculated with faeces from human donors. Water and metabolites were removed from the fermentation by osmosis using a solution of polyethylene glycol (PEG). The system was concomitantly inoculated alongside a conventional single-stage chemostat. Three fermentations were carried out using inocula from three healthy human donors. Bacterial populations from the chemostat and biofilm system were enumerated using fluorescence in situ hybridization. The culture fluid was also analysed for its short-chain fatty acid (SCFA) content. A higher cell density was achieved in the biofilm fermentation system (taking into account the contribution made by the bead-associated bacteria) as compared with the chemostat, owing to the removal of water and metabolites. Evaluation of the bacterial populations revealed that the biofilm system was able to support two distinct groups of bacteria: bacteria growing in association with the mucin beads and planktonic bacteria in the culture fluid. Furthermore, distinct differences were observed between populations in the biofilm fermenter system and the chemostat, with the former supporting higher populations of clostridia and Escherichia coli. SCFA levels were lower in the biofilm system than in the chemostat, as in the former they were removed via the osmotic effect of the PEG. These experiments demonstrated the potential usefulness of the biofilm system for investigating the complexity of the human colonic microflora and the contribution made by sessile bacterial populations.

Quantificação das Bactérias Sólido-Aderidas, Bactérias e Protozoários Líquido-Associados do Rúmen de Bovinos Jovens Alimentados com Amiréia

Foram utilizados quatro bovinos mestiços, castrados, canulados no rúmen com o objetivo de quantificar as bactérias e protozoários líquido-associados, as bactérias sólido-aderidas e relacioná-las com o pH ruminal de bovinos recebendo amiréia dietética (30% de uréia) no concentrado e silagem de milho. Realizaram-se três coletas de conteúdo ruminal, à 1h, às 2h30 e 11h30 após a alimentação. A massa microbiana foi quantificada e qualificada nas diferentes frações das bactérias sólido-aderidas (BSA), bactérias líquido-associadas (BLA) e protozoários líquido-associados (PLA) e seus teores de nitrogênio (N), de matéria seca (MS) e de matéria orgânica (MO), determinados. A população microbiana apresentou crescente contribuição das BSA no decorrer do tempo, o que não ocorreu com BLA e PLA. O teor de MO/MS das BSA também aumentou o tempo 2h30, permanecendo inalterado até 11h30. Os teores de nitrogênio das BSA expressos na matéria orgânica diminuíram em tempos de coleta iguais ou superiores a 2h30, embora os teores de N na matéria seca não apresentassem essa diferença. As relações entre bactéria:protozoário encontradas foram iguais a 1 : 2,1 à 1 h, 2,6: 1 às 2h30 e 2,2: 1 às 11h30 após a alimentação, quando foi observado predomínio de protozoários e bactérias, ambos associados ao líquido ruminal. As quantidades totais e as frações do pool microbiano ruminal não foram influenciadas pelo pH, provavelmente, porque este se manteve sempre acima de 6,39.

Do Atopobium vaginae, Megasphaera sp. and Leptotrichia sp. change the local innate immune response and sialidase activity in bacterial vaginosis?

Objectives: To investigate if the participation of Atopobium vaginae, Megasphaera sp. and Leptotrichia sp. in the bacterial community of bacterial vaginosis (BV) is associated with distinct patterns of this condition. Methods: In this cross-sectional controlled study, 205 women with BV and 205 women with normal flora were included. Vaginal rinsing samples were obtained for measuring the levels of pro-inflammatory cytokines and bacterial sialidases. Real-time PCR was used to quantify the BV-associated bacteria and to estimate the total bacterial load using the 16S rRNA. Principal component analysis (PCA) using the measured parameters was performed to compare the BV samples with lower and higher loads of the species of interest. Results: Higher bacterial load (p<0.001), levels of interleukin 1-β (p<0.001) and sialidase activity (p<0.001) were associated with BV. Women with BV and higher relative loads of A vaginae, Megasphaera sp. and Leptotrichia sp. presented increased sialidase activity, but unchanged cytokine levels. PCA analysis did not indicate a different pattern of BV according to the loads of A vaginae, Megasphaera sp. and Leptotrichia sp. Conclusions: Greater participation of A vaginae, Megasphaera sp. and Leptotrichia sp. in vaginal bacterial community did not indicate a less severe form of BV; moreover, it was associated with increased sialidase activity.

ransmissão de Candidatus Liberibacter asiaticus por Diaphorina citri em folhas destacadas de citros

Pós-graduação em Agronomia (Produção Vegetal) - FCAV

Digestão e fermentação ruminal em vacas leiteiras recebendo glicerina bruta na dieta

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Glicerina bruta em dietas para bovinos da raça Nelore confinados

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

A utilização de glicerina em dietas para bovinos altera a microbiota ruminal

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Quantification of ruminal microbiota and production of methane and carbonic dioxide from diets with inclusion of glycerin

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Morphological description of the mouthparts of the Asian citrus psyllid, Diaphorina citri Kuwayama (Hemiptera: Psyllidae)

Scanning (SEM) and transmission (TEM) electron microscopy were used to elucidate the morphology of the rostrum, as well as the mandibular and maxillary stylets of the psyllid Diaphorina cirri, vector of phloem-inhabiting bacteria associated with citrus huanglongbing (HLB) disease. D. cirri has a cone-shaped rostrum that extends behind the pair of prothoracic coxae. The stylet bundle comprises a pair of mandibular (Md) and maxillary (Mx) stylets with a mean length of 513.3 mu m; when retracted, their proximal portions form a loop and are stored in the crumena (Cr). Serial cross-sections of the rostrum revealed that the mandibles are always projected in front of the maxillary stylets. The two maxillary stylets form the food and salivary canals, with diameters of 0.9 mu m and 0.4 mu m respectively. These two canals merge at the end of the stylets forming a common duct with a length of 4.3 mu m and a mean diameter of 0.9 mu m. The acrostyle, a distinct anatomical structure present in the common duct of aphid maxillary stylets, was not observed by TEM in the ultrathin cross-sections of the common duct (CD) of D. citri. This study provides new information on D. citri mouthparts that may help to understand the behaviour of this important vector of HLB-associated bacteria. (C) 2011 Elsevier Ltd. All rights reserved.

Coxiella symbiont in the tick Ornithodoros rostratus (Acari: Argasidae)

In the present study, the presence of tick-associated bacteria and protozoa in Ornithodoros rostratus ticks (adults, nymphs, and eggs) from the Pantanal region of Brazil were determined by molecular detection. In these ticks, DNA from protozoa in the genera Babesia and Hepatozoon, and bacteria from the genera Rickettsia, Borrelia, Anaplasma, and Ehrlichia were not detected. Conversely, all tested ticks (100%) yielded PCR products for 3 Coxiella genes (16S rRNA, pyrG, cap). PCR and phylogenetic analysis of 3 amplified genes (16S rRNA, pyrG, cap) demonstrated that the agent infecting O. rostratus ticks was a member of the genus Coxiella. This organism grouped with Coxiella symbionts of other soft tick species (Argasidae), having different isolates of C. burnetii as a sister group, and these 2 groups formed a clade that grouped with another clade containing Coxiella symbionts of hard tick species (Ixodidae). Analysis of tick mitochondrial 16S rRNA gene database composed mostly of tick species previously shown to harbor Coxiella symbionts suggests a phylogenetic congruence of ticks and their Coxiella symbionts. Furthermore, these results suggest a very long period of coevolution between ticks and Coxiella symbionts and indicates that the original infection may have occurred in an ancestor common to the 2 main tick families, Argasidae (soft ticks) and Ixodidae (hard ticks). However, this evolutionary relationship must be confirmed by more extensive testing of additional tick species and expanded populations. (c) 2012 Elsevier GmbH. All rights reserved.

Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads

Abstract Background Xanthomonads are plant-associated bacteria responsible for diseases on economically important crops. Xanthomonas fuscans subsp. fuscans (Xff) is one of the causal agents of common bacterial blight of bean. In this study, the complete genome sequence of strain Xff 4834-R was determined and compared to other Xanthomonas genome sequences. Results Comparative genomics analyses revealed core characteristics shared between Xff 4834-R and other xanthomonads including chemotaxis elements, two-component systems, TonB-dependent transporters, secretion systems (from T1SS to T6SS) and multiple effectors. For instance a repertoire of 29 Type 3 Effectors (T3Es) with two Transcription Activator-Like Effectors was predicted. Mobile elements were associated with major modifications in the genome structure and gene content in comparison to other Xanthomonas genomes. Notably, a deletion of 33 kbp affects flagellum biosynthesis in Xff 4834-R. The presence of a complete flagellar cluster was assessed in a collection of more than 300 strains representing different species and pathovars of Xanthomonas. Five percent of the tested strains presented a deletion in the flagellar cluster and were non-motile. Moreover, half of the Xff strains isolated from the same epidemic than 4834-R was non-motile and this ratio was conserved in the strains colonizing the next bean seed generations. Conclusions This work describes the first genome of a Xanthomonas strain pathogenic on bean and reports the existence of non-motile xanthomonads belonging to different species and pathovars. Isolation of such Xff variants from a natural epidemic may suggest that flagellar motility is not a key function for in planta fitness.

Therapeutic strategies for modulation of the vaginal microbiota

The vaginal microbiota of healthy women consists of a wide variety of anaerobic and aerobic bacteria, dominated by the genus Lactobacillus. The activity of lactobacilli is essential to protect women from genital infections and to maintain the natural healthy balance of the vaginal ecosystem. This role is particularly important during pregnancy because vaginal infection is one of the most important mechanisms for preterm birth. The most common vaginal disorder is bacterial vaginosis (BV). BV is a polymicrobial disorder, characterized by a depletion of lactobacilli and an increase in the concentration of other bacteria, including Gardnerella vaginalis, anaerobic Gram-negative rods, anaerobic Gram-positive cocci, Mycoplasma hominis, and Mobiluncus spp. An integrated molecular approach based on real-time PCR and PCR-DGGE was used to investigate the effects of two different therapeutic approaches on the vaginal microbiota composition. (i) The impact of a dietary supplementation with the probiotic VSL#3, a mixture of Lactobacillus, Bifidobacterium and Streptococcus strains, on the vaginal microbial ecology and immunological profiles of healthy women during late pregnancy was investigated. The intake was associated to a slight modulation of the vaginal microbiota and cytokine secretion, with potential implications in preventing preterm birth. (ii) The efficacy of different doses of the antibiotic rifaximin (100 mg/day for 5 days, 25 mg/day for 5 days, 100 mg/day for 2 days) on the vaginal microbiota of patients with BV enrolled in a multicentre, double-blind, randomised, placebo-controlled study was also evaluated. The molecular analyses demonstrated the ability of rifaximin 25 mg/day for 5 days to induce an increase of lactobacilli and a decrease of the BV-associated bacteria after antibiotic treatment, and a reduction of the complexity of the vaginal microbial communities. Thus, confirming clinical results, it represents the most effective treatment to be used in future pivotal studies for the treatment of BV.

Mastitis diagnostics: quantitative PCR for Staphylococcus aureus genotype B in bulk tank milk

A novel real-time quantitative PCR assay for detecting the pathogenic and contagious Staphylococcus aureus genotype B (GTB) in bulk tank milk was developed and evaluated. The detection of this pathogen in bulk tank milk would greatly facilitate its control, as it is responsible for great economic loss in Swiss dairy herds. The assay is based on the simultaneous detection of 3 GTB-typical target sequences, including 2 enterotoxin genes and a polymorphism within the leucotoxin E gene. A variety of mastitis-associated bacteria was used to validate the assays, resulting in an analytical specificity of 100% and high repeatability. The analytical sensitivity in milk was 40 cfu/mL. An exponential association between simulated cow prevalence and quantitative PCR result was observed. An initial field study revealed 1 GTB-positive herd among the 33 studied herds. This novel assay for bulk tank milk analysis is suitable for routine purposes and is expected to be an effective tool for minimizing Staph. aureus GTB in Swiss dairy herds.