An Analysis of National Park Service Policy Regarding Management of White-Tailed Deer at Mammoth Cave National Park, Kentucky

The population of white-tailed deer (Odocoileus virginianus) occupying Mammoth Cave National Park, Kentucky is unknown. The population is uncontrolled, unmanaged, and suspected to be high. When uncontrolled, white-tailed deer tend to overpopulate and inflict negative impacts to vegetation through increased herbivory. The goal of this project is to demonstrate that the status of white-tailed deer at Mammoth Cave merits a policy formulation, and to provide suggestions as to what such a policy should contain. Three similar national parks have previously developed policies to manage white-tailed deer. These policies are analyzed, and common elements are identified that can transpose into a comparable policy at Mammoth Cave. Recommendations for a white-tailed deer management policy at Mammoth Cave National Park are given.

The white-tailed deer of the Pisgah National Game Preserve, North Carolina.

Errata slip inserted.

Idiopathic necrotizing dermatitis: Current management

Objectives: To identify and demonstrate necrotizing dermatitis in infancy; an uncommon, puzzling syndrome, in which anecdotal reporting and personal experience indicates that one third of cases may require skin grafting. Much informed discussion about the pathogenesis of this distressing syndrome centres on the role of spider envenomation; and in particular on the speculative role of the Australian White-tailed spider, Lampona cylindrata. Methods: We present here six cases of necrotizing dermatitis treated surgically at the Royal Children's Hospital and Mater Children's Hospital in Brisbane over the period from 1991 to 1999. Clinical history, surgical details and pathological investigations were reviewed in each case. Microbiological investigation of necrotic ulcers included standard aerobic and anaerobic culture. Result: Nocardia and Staphylococcus were cultured in two cases, but no positive bites were witnessed and no spiders were identified by either the children or their parents. All cases were treated with silver sulphadiazine creme. Two of the infants required general anaesthesia, excision debridement and split skin grafting. The White-tailed spider, Lampona cylindrata, does not occur in Queensland, but Lampona murina does; neither species has necrotizing components in its venom. Circumstantial evidence is consistent with this syndrome being due to invertebrate envenomation, possibly following arachnid bites. Conclusion: In our experience there is insufficient evidence to impute a specific genus as the cause, at this stage of scientific knowledge. If the offending creature is a spider, we calculate that the syndrome of necrotizing dermatitis occurs in less than 1 in 5000 spider bites.

The effects of habitat fragmentation on the demography and population genetic structure of Uromys Caudimaculatus

Habitat fragmentation can have an impact on a wide variety of biological processes including abundance, life history strategies, mating system, inbreeding and genetic diversity levels of individual species. Although fragmented populations have received much attention, ecological and genetic responses of species to fragmentation have still not been fully resolved. The current study investigated the ecological factors that may influence the demographic and genetic structure of the giant white-tailed rat (Uromys caudimaculatus) within fragmented tropical rainforests. It is the first study to examine relationships between food resources, vegetation attributes and Uromys demography in a quantitative manner. Giant white-tailed rat densities were strongly correlated with specific suites of food resources rather than forest structure or other factors linked to fragmentation (i.e. fragment size). Several demographic parameters including the density of resident adults and juvenile recruitment showed similar patterns. Although data were limited, high quality food resources appear to initiate breeding in female Uromys. Where data were sufficient, influx of juveniles was significantly related to the density of high quality food resources that had fallen in the previous three months. Thus, availability of high quality food resources appear to be more important than either vegetation structure or fragment size in influencing giant white-tailed rat demography. These results support the suggestion that a species’ response to fragmentation can be related to their specific habitat requirements and can vary in response to local ecological conditions. In contrast to demographic data, genetic data revealed a significant negative effect of habitat fragmentation on genetic diversity and effective population size in U. caudimaculatus. All three fragments showed lower levels of allelic richness, number of private alleles and expected heterozygosity compared with the unfragmented continuous rainforest site. Populations at all sites were significantly differentiated, suggesting restricted among population gene flow. The combined effects of reduced genetic diversity, lower effective population size and restricted gene flow suggest that long-term viability of small fragmented populations may be at risk, unless effective management is employed in the future. A diverse range of genetic reproductive behaviours and sex-biased dispersal patterns were evident within U. caudimaculatus populations. Genetic paternity analyses revealed that the major mating system in U. caudimaculatus appeared to be polygyny at sites P1, P3 and C1. Evidence of genetic monogamy, however, was also found in the three fragmented sites, and was the dominant mating system in the remaining low density, small fragment (P2). High variability in reproductive skew and reproductive success was also found but was less pronounced when only resident Uromys were considered. Male body condition predicted which males sired offspring, however, neither body condition nor heterozygosity levels were accurate predictors of the number of offspring assigned to individual males or females. Genetic spatial autocorrelation analyses provided evidence for increased philopatry among females at site P1, but increased philopatry among males at site P3. This suggests that male-biased dispersal occurs at site P1 and female-biased dispersal at site P3, implying that in addition to mating systems, Uromys may also be able to adjust their dispersal behaviour to suit local ecological conditions. This study highlights the importance of examining the mechanisms that underlie population-level responses to habitat fragmentation using a combined ecological and genetic approach. The ecological data suggested that habitat quality (i.e. high quality food resources) rather than habitat quantity (i.e. fragment size) was relatively more important in influencing giant white-tailed rat demographics, at least for the populations studied here . Conversely, genetic data showed strong evidence that Uromys populations were affected adversely by habitat fragmentation and that management of isolated populations may be required for long-term viability of populations within isolated rainforest fragments.

Toward resolving deep neoaves phylogeny : data, signal enhancement, and priors

We report three developments toward resolving the challenge of the apparent basal polytomy of neoavian birds. First, we describe improved conditional down-weighting techniques to reduce noise relative to signal for deeper divergences and find increased agreement between data sets. Second, we present formulae for calculating the probabilities of finding predefined groupings in the optimal tree. Finally, we report a significant increase in data: nine new mitochondrial (mt) genomes (the dollarbird, New Zealand kingfisher, great potoo, Australian owlet-nightjar, white-tailed trogon, barn owl, a roadrunner [a ground cuckoo], New Zealand long-tailed cuckoo, and the peach-faced lovebird) and together they provide data for each of the six main groups of Neoaves proposed by Cracraft J (2001). We use his six main groups of modern birds as priors for evaluation of results. These include passerines, cuckoos, parrots, and three other groups termed “WoodKing” (woodpeckers/rollers/kingfishers), “SCA” (owls/potoos/owlet-nightjars/hummingbirds/swifts), and “Conglomerati.” In general, the support is highly significant with just two exceptions, the owls move from the “SCA” group to the raptors, particularly accipitrids (buzzards/eagles) and the osprey, and the shorebirds may be an independent group from the rest of the “Conglomerati”. Molecular dating mt genomes support a major diversification of at least 12 neoavian lineages in the Late Cretaceous. Our results form a basis for further testing with both nuclear-coding sequences and rare genomic changes.

Nutritional evaluation of fish solubles

This paper reports the results of a preliminary study on the biochemical composition and nutritional charactersitics of fish solubles from oil sardines (Sardinella longiceps) and white tailed pink perch (Nemipterus japonicus). The nutritional quality of sardine solubles has been evaluated by feeding trials using albino rats also. The studies have shown that compared to a control group of rats whose diet had casein as the sole source of protein, a group of rats in whose diet dried sardine solubles replaced half of the casein, had a noticeably higher growth rate. This higher growth rate was not prominent in the early stages of growth (4-7 weeks). But, during later stages (7-10 weeks), solubles incorporated diet supported a distinctly higher growth rate. This effect was more pronounced in female rats (17% over the control group) compared to the male rats (4% over the control group). Fish solubles are found to be poor sources of essential amino acids. Thus, the observed increase in growth rate is higher than the rate expected from the amino acid make up. This probably supports the view expressed by workers elsewhere that fish solubles contain some unidentified growth factors.

L'interaction entre les savoirs écologiques traditionnels et les changements climatiques : les Cris de la Baie-James, la bernache du Canada et le caribou des bois

Cette étude vise à identifier les effets des changements climatiques sur les activités de subsistance traditionnelles des chasseurs cris de la Baie-James. De nombreuses études se penchent sur les changements climatiques, mais relativement peu d’entre elles traitent de leurs effets socio-économiques et socioculturels sur les populations dans le Subarctique du Québec. Cette thèse explore les mécanismes d’intégration des connaissances scientifiques au savoir écologique traditionnel (SET) ; une intégration prônée par de nombreux chercheurs comme l’évolution souhaitable dans la recherche sur le SET et sur ses applications. L’étude de cette intégration se fait ici à l’aide d’une analyse des perceptions des chasseurs de l’Association des Trappeurs Cris concernant les effets des changements climatiques, avec l’accent sur les activités de subsistance traditionnelles en lien avec la bernache du Canada et le caribou des bois, deux espèces importantes culturellement. Une approche combinant l’aspect théorique de l’ethnoécologie et l’aspect pratique de l’étude de cas a été utilisée. Diverses sources de données ont été employées : l’analyse documentaire et cartographique, les questionnaires et les entrevues ouvertes et semi-dirigées. Cette recherche met en évidence des variations dans l’observation des changements climatiques et dans la perception de leurs effets par les chasseurs cris selon la localisation de leur communauté. Certains effets sont ressentis de la même façon par tous. Ainsi, les participants de toutes les communautés s’inquiètent des dangers liés à une fragilité accrue de la glace sur les lacs et les rivières. Cependant, ce sont surtout les membres des communautés côtières qui s’alarment du déplacement des bernaches vers l’intérieur du territoire. Ils sont aussi les seuls à ne pas percevoir de baisse du nombre de caribous des bois sur leurs lignes de trappe. Les effets des changements climatiques paraissent avoir un impact sur le mode de vie traditionnel cri en lien avec la bernache du Canada et le caribou des bois et affecter la transmission du savoir traditionnel vers les nouvelles générations quant au caribou des bois. Les résultats montrent aussi que la combinaison du SET et des données scientifiques permet de compléter le portrait de l’évolution du climat et des espèces (par ex. : variation du climat entre la côte et l’intérieur du territoire, apparition du cerf de Virginie et du coyote sur le territoire) et d’élaborer de nouvelles pistes de recherches et des hypothèses qui n’auraient pas été autrement identifiées (par ex. : causes d’un changement dans la structure de la gla ce, évolution des aires de répartition des sous-espèces de bernaches, impact des insectes suceurs-piqueurs sur la santé des caribous). Elle facilite également l’identification et la compréhension des enjeux et des processus d’adaptation qui ont lieu dans les communautés cries de la Baie-James (par ex. : diminution de la consommation du caribou, maintien de la consommation de la bernache, dangers accrus dans les déplacements liés à la fragilité de la glace ou à la difficulté à prévoir les schèmes climatiques). L’utilisation combinée du SET et du savoir scientifique permet de mieux appréhender les effets des changements climatiques et les dynamiques socioculturelles et environnementales complexes du territoire de la Baie-James.

La conservation de la biodiversité dans les aires protégées en zones périurbaines : dynamique des communautés végétales au parc national du Mont-Saint-Bruno entre 1977 et 2013

Ce mémoire visait à déterminer si un petit parc périurbain, en l’occurrence le Parc national du Mont-Saint-Bruno, est parvenu à maintenir l’intégrité de sa flore au cours des trente dernières années en dépit de pressions humaines croissantes et de perturbations naturelles passées, en plus d’identifier les principaux changements floristiques survenus au cours de cette période et les facteurs responsables. Pour répondre à ces objectifs, une étude historique a été réalisée, en comparant un inventaire floristique ancien (1977) à un inventaire récent (2013). Mes résultats montrent d’abord une forte croissance de la diversité alpha indigène au cours des 35 dernières années, accompagnée d’un déclin significatif de la diversité bêta (30%). Malgré cette homogénéisation taxonomique, la diversité fonctionnelle de la flore forestière s’est accrue, la rendant probablement plus résiliente aux événements perturbateurs. D’autre part, mes analyses ont révélé la progression de traits fonctionnels souvent associés à des habitats forestiers intensément broutés, révélant une certaine influence du cerf de Virginie sur la composition et la structure de la flore forestière. Enfin, mes résultats ont montré que les herbiers botaniques se révèlent être une alternative fiable aux méthodes traditionnelles pour documenter et évaluer l’impact des grands herbivores sur la morphologie des plantes broutées. Au final, cette étude a montré que les petites aires protégées périurbaines peuvent jouer un rôle majeur dans la préservation de la diversité floristique d’habitats forestiers d’intérêt, particulièrement lorsque leur statut de protection permet d’encadrer de manière stricte les activités humaines.

Social values and species conservation: the case of Baudin's and Carnaby's black-cockatoos

We investigated how the socio–political and ecological environment are associated with the conservation management strategies for two rare, endemic and almost identical Australian white-tailed black-cockatoos: Baudin's (Calyptorhynchus baudinii) and Carnaby's black-cockatoo (C. latirostris). Substantially less investment and action has occurred for Baudin's black-cockatoo. Interviews with key informants revealed that this disparity has probably arisen because Baudin's black-cockatoo has long been considered a pest to the apple industry, lives primarily in tall forests and has had little research undertaken on its biology and threats. By contrast, Carnaby's black-cockatoo has been the subject of one of the longest running research projects in Australia, is highly visible within the urban environment and does not appear to affect the livelihoods of any strong stakeholder group. We suggest the social context within which recovery efforts occur could be an important determinant in species persistence. We argue that social research is fundamental to a better understanding of the nature of efforts to conserve particular species, the factors associated with these efforts and their likelihood of success.

Habitat associations of small mammals in southern Brazil and use of regurgitated pellets of birds of prey for inventorying a local fauna

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Inquérito sorológico, molecular e fatores de risco para leptospirose em mamíferos cativos, papel dos animais sinantrópicos presentes no local e aspectos de saúde pública

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

O coatá-de-testa-branca (Ateles marginatus) do baixo Rio Tapajós, Pará: distribuição, abundância e conservação

O coatá-de-testa-branca, Ateles marginatus, é uma espécie de primata ameaçada de extinção segundo a UICN. Endêmica da Amazônia brasileira, este status deve-se a uma combinação de uma distribuição geográfica relativamente restrita e às crescentes pressões antrópicas dentro desta área. O presente estudo compreendeu a margem direita do baixo Rio Tapajós, centrado na rodovia BR-163 (Santarém-Cuiabá), região de intensa e antiga ocupação humana. O objetivo principal do estudo foi uma avaliação da distribuição e abundância de A. marginatus dentro desta área, e a análise dos fatores determinantes destas variáveis. Foram visitados 16 sítios, onde moradores foram entrevistados informalmente para a confirmação da presença ou ausência da espécie. Levantamentos populacionais de transecção linear foram realizados em oito sítios, representativos de diferentes graus de fragmentação de hábitat, com um percurso total de 697,6 km. Em dois sítios, agrupamentos de A. marginatus foram monitorados para a obtenção de dados sobre seu comportamento e ecologia. Os resultados indicam que a espécie é ausente de algumas áreas, incluindo lacunas naturais em sua distribuição e uma zona de extinção local, que parece estender até pelo menos 60 km a sul da cidade de Santarém. Um total de 23 espécies de mamíferos não-voadores foram registradas nos levantamentos populacionais, mas a presença de A. marginatus foi confirmada em apenas três sítios. O estudo indica que fragmentos isolados de floresta com menos de cem hectares não suportam populações de A. marginatus. No caso de fragmentos maiores, a presença e abundância da espécie parecem ser influenciadas mais diretamente por fatores antrópicos (caça e extração de madeira). Mesmo em floresta contínua, a espécie parece ser relativamente pouco abundante, mas semelhante a outras populações de Ateles na Amazônia brasileira. Dois grupos, um com oito membros e o outro com pelo menos vinte, foram identificados durante o monitoramento. Como em outros membros do gênero, a formação de subagrupamentos (fissão-fusão), uma proporção relativamente alta de fêmeas na população e uma dieta frugívora são observadas também em A. marginatus. O estudo deixa clara a situação crítica da espécie na região, frente à ocupação humana, e a necessidade urgente tanto de deter o processo de fragmentação de hábitat como de implantar novas unidades de conservação.

Sazonalidade da dieta e hábitos alimentares do gavião-peneira (Elanus leucurus) em habitats agrícolas no sul do Brasil

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Animal-side serologic assay for rapid detection of Mycobacterium Bovis infection in multiple species of free-ranging wildlife

Numerous species of mammals are susceptible to Mycobacterium bovis, the causative agent of bovine tuberculosis (TB). Several wildlife hosts have emerged as reservoirs of M. bovis infection for domestic livestock in different countries. In the present study, blood samples were collected from Eurasian badgers (n = 1532), white-tailed deer (n = 463), brushtail possums (n = 129), and wild boar (n = 177) for evaluation of antibody responses to M. bovis infection by a lateral-flow rapid test (RT) and multiantigen print immunoassay (MAPIA). Magnitude of the antibody responses and antigen recognition patterns varied among the animals as determined by MAPIA; however, MPB83 was the most commonly recognized antigen for each host studied. Other seroreactive antigens included ESAT-6, CFP10, and MPB70. The agreement of the RT with culture results varied from 74% for possums to 81% for badgers to 90% for wild boar to 97% for white-tailed deer. Small numbers of wild boar and deer exposed to M. avium infection or paratuberculosis, respectively, did not cross-react in the RT, supporting the high specificity of the assay. In deer, whole blood samples reacted similarly to corresponding serum specimens (97% concordance), demonstrating the potential for field application. As previously demonstrated for badgers and deer, antibody responses to M. bovis infection in wild boar were positively associated with advanced disease. Together, these findings suggest that a rapid TB assay such as the RT may provide a useful screening tool for certain wildlife species that may be implicated in the maintenance and transmission of M. bovis infection to domestic livestock.

The Economics of Managing Wildlife Disease

The spread of infectious disease among and between wild and domesticated animals has become a major problem worldwide. Upon analyzing the dynamics of wildlife growth and infection when the diseased animals cannot be identified separately from healthy wildlife prior to the kill, we find that harvest-based strategies alone have no impact on disease transmission. Other controls that directly influence disease transmission and/or mortality are required. Next, we analyze the socially optimal management of infectious wildlife. The model is applied to the problem of bovine tuberculosis among Michigan white-tailed deer, with non-selective harvests and supplemental feeding being the control variables. Using a two-state linear control model, we find a two-dimensional singular path is optimal (as opposed to a more conventional bang-bang solution) as part of a cycle that results in the disease remaining endemic in the wildlife. This result follows from non-selective harvesting and intermittent wildlife productivity gains from supplemental feeding.