Caracterização molecular da resistência genotípica secundária aos antirretrovirais em pacientes com Aids e prevalência de subtipos do HIV-1 nos Estados do Pará e Amazonas, Brasil: 2002 a 2006

A resistência às drogas antirretrovirais é o inevitável resultado da incompleta supressão da replicação do HIV-1. No presente estudo foi caracterizado o perfil de resistência genética aos antirretrovirais em amostras sorológicas provenientes dos estados do Amazonas e Pará, Região Norte do Brasil, no período de 2002 a 2006. Um total de 127 amostras de plasmas obtidas de pacientes HIV positivos e/ou Aids foram submetidas ao teste de resistência pelo ViroSeq^TM Genotyping System (Celera Diagnostic-Abbott, USA). Considerando a informação genética derivada das regiões da protease e/ou transcriptase reversa do HIV-1, o subtipo B foi observado em 85% dos casos; seguido por ambos subtipo F1 e forma recombinante BF1 (4,6%) e CF1 (0,8%). A mutação M184V (81,1%) foi a mais comumente observada associada aos NRTI, em indivíduos positivos com TARV no estado do Pará, e a mutação T215F/Y (56,3%) em indivíduos do estado do Amazonas. A mutação K103N foi a mais prevalente (em torno de 33,5%) para os NNRTI em ambos os estados. O perfil de mutação de resistência associado ao gene da protease mostrou a mutação minor L63P como a mais frequente em ambos os estados. O estudo revelou a importância da identificação de mutações associadas com resistência às drogas antirretrovirais para o uso em futuros esquemas terapêuticos. Os resultados deste estudo foram similares aos outros realizados em várias regiões do Brasil.

Estrutura e dinâmica de famílias com um filho com necessidades educacionais especiais

No contexto brasileiro, a investigação acerca das necessidades educacionais especiais concentra-se no estudo das dificuldades e possibilidades de inclusão desses alunos em classes regulares de ensino, enfatizando os processos de ensino e aprendizagem. Poucos estudos, no Brasil, admitem a família como objeto de análise, embora não se questione a sua importância para o desenvolvimento infantil. Dessa forma, com base no modelo bioecológico e na teoria estrutural sistêmica, admitindo-se a família como um campo de desenvolvimento comum a todos os membros faz-se necessário conhecer o modo como ela se estrutura para atender as demandas decorrentes da necessidade especial de seu filho e os efeitos dessa dinâmica nos demais membros. A partir disso objetivou-se descrever, a estrutura e a dinâmica de famílias de crianças com necessidades educacionais especiais, além de: analisar as interações e relações estabelecidas dentro de cada subsistema (conjugal, fraternal, parental) e entre eles, assim como identificar a organização familiar, a partir dos mecanismos de coesão e hierarquia de acordo com o modelo estrutural sistêmico. Como estratégia de pesquisa utilizou-se o estudo de casos múltiplos, com duas famílias de crianças com necessidades educacionais especiais, sendo uma menina surda, de dez anos, e um menino, de doze anos, com dificuldades de aprendizagem. Os instrumentos e técnicas aplicados foram: Roteiro de Entrevista Semi-Estruturado, Inventário de Rotina (IR), Observação Sistemática, Diário de Campo, Family System Test (FAST) e Genograma. Os escores de proximidade obtidos no FAST foram coerentes com os resultados do IR, demonstrando maior coesão na díade mãe-filho que na díade pai-filho, nas duas famílias; quanto à flexibilidade das fronteiras, em geral, a percepção das famílias foi de fronteiras rígidas, nos sistemas, familiar, parental e fraternal, sendo que, a distribuição de hierarquia foi percebida pela díade parental, nas duas famílias, como sinal de prediletância, para o subsistema fraternal, e dominação, para o parental, o que interferiu nas estruturas relacionais desses subsistemas percebidas pelos membros. Na avaliação do subsistema fraternal, a ausência de poder, representada pelos pais e a representação dessa variável pelas crianças resultou em diferenças de percepção, no grupo. Portanto, esse estudo permitiu, por meio da identificação das relações e percepções dos membros das famílias, a compreensão de sua dinâmica e a influência desta, na trajetória desenvolvimental das crianças e do grupo, a partir, das demandas decorrentes do diagnóstico e das estratégias peculiares a cada família para enfrentar as necessidades especiais de suas crianças. Percebe-se que a família, sendo a principal parceira da escola na educação, precisa ser olhada como um sistema cujas estratégias relacionais são fundamentais para que a criança tenha suas habilidades estimuladas podendo, assim, superar suas dificuldades.

Estudo comparativo de sistemas de rádio digital sobre fibra aplicado a C-RAN

O objetivo deste trabalho é comparar aspectos relacionados ao uso de Multiplexação por Subportadora (SCM) em um sistema de transmissão de Rádio Digital sobre Fibra (DRoF) aplicado à Arquitetura de Acesso a Rádio Centralizado (C-RAN). Para isso, foram criados dois cenários que fazem uso da tecnologia DRoF, onde no primeiro, três subportadoras são transmitidas em um comprimento de onda e, para o segundo cenário, três comprimentos de onda são transmitidos, onde cada um possui uma única subportadora. Para ambas configurações é visado alimentar unidades de rádio remoto (RRH) localizadas na torre de transmissão. São analisados aspectos de desempenho da recepção, alcance das redes e complexidade do sistema para cada um dos cenários propostos. Além disso, são mostrados passo a passo como os sistemas foram construídos utilizando o software de simulação VPITransmissionMaker. Foram considerados para cada subportadora uma taxa de 250 Mbps, modulação 16-QAM, centrados na frequência de 5GHz. Os resultados obtidos demonstram que, para SCM-DRoF, uma Taxa de Erro de Bit (BER) de 10^-6 é mantida constante para enlaces de até 20 km. No segundo modelo, sem uso de SCM, um desempenho similar foi verificado, contudo com alcance de até 40 km. Dado o contexto da aplicação, os fatores desempenho e distância levam a crer que ambos cenários de transmissão podem ser utilizadas para C-RAN. Contudo, levando em consideração o custo e a complexidade no domínio óptico, o sistema utilizando SCM, comparativamente, possui mais vantagens. Conclui-se então que o uso de SCM apresenta-se como uma forte opção para aplicações no contexto das novas tecnologias de redes de acesso móvel.

Avaliação dos efeitos dos inseticidas malation e fipronil sobre a viabilidade e regeneração de girardia tigrina (Platyhelminthe, tricladida)

In this study were carried out toxicity tests and the evaluation of sub lethal effects of the insecticides malathion and fipronil, over the test system of Girardia tigrina, using for these analyses a great variety of methods. For evaluation of the lethal concentrations of the products, adult planarians were exposed to several different concentrations. All the tests were carried out in duplicate, maintained on the shelter of the light, on a temperature 24-26ºC and they had the duration of 96h, with observations at each 24h. The results were statically valued by the tests U of Mann- Whitney, Spearman-Karber, ANOVA and Pearson correlation. The effects over the system-test, in the different tested concentrations, varied in accordance with the time of exposition. The EC50 given by the test of Spearman-Karber was of 12,5mg/L for malathion and 13,4mg/L for fipronil. The evaluation of sub lethal effects was composed by analyses of the potential of regeneration; histological, for tissue damage evaluation; d; and the “comet assay”, for DNA damage detection. The specimens split up and exposed to the insecticides demonstrated, between other effects, retardation in development of the regenerative blastema. The histological evaluation has shown that exposed planarians to lower concentrations of the insecticides cause more significant damage against the tissues and some specific cell types. Through the comet assay, significant damages were noticed in the DNA in all the treatments, when compared with the control group. Such damages may result in reproduction and immunity alterations, which reduce the competitive efficiency and, consequently, the survival chances of these organisms.

Meta-models, environment and layers: agent-oriented engineering of complex systems

Traditional software engineering approaches and metaphors fall short when applied to areas of growing relevance such as electronic commerce, enterprise resource planning, and mobile computing: such areas, in fact, generally call for open architectures that may evolve dynamically over time so as to accommodate new components and meet new requirements. This is probably one of the main reasons that the agent metaphor and the agent-oriented paradigm are gaining momentum in these areas. This thesis deals with the engineering of complex software systems in terms of the agent paradigm. This paradigm is based on the notions of agent and systems of interacting agents as fundamental abstractions for designing, developing and managing at runtime typically distributed software systems. However, today the engineer often works with technologies that do not support the abstractions used in the design of the systems. For this reason the research on methodologies becomes the basic point in the scientific activity. Currently most agent-oriented methodologies are supported by small teams of academic researchers, and as a result, most of them are in an early stage and still in the first context of mostly \academic" approaches for agent-oriented systems development. Moreover, such methodologies are not well documented and very often defined and presented only by focusing on specific aspects of the methodology. The role played by meta- models becomes fundamental for comparing and evaluating the methodologies. In fact a meta-model specifies the concepts, rules and relationships used to define methodologies. Although it is possible to describe a methodology without an explicit meta-model, formalising the underpinning ideas of the methodology in question is valuable when checking its consistency or planning extensions or modifications. A good meta-model must address all the different aspects of a methodology, i.e. the process to be followed, the work products to be generated and those responsible for making all this happen. In turn, specifying the work products that must be developed implies dening the basic modelling building blocks from which they are built. As a building block, the agent abstraction alone is not enough to fully model all the aspects related to multi-agent systems in a natural way. In particular, different perspectives exist on the role that environment plays within agent systems: however, it is clear at least that all non-agent elements of a multi-agent system are typically considered to be part of the multi-agent system environment. The key role of environment as a first-class abstraction in the engineering of multi-agent system is today generally acknowledged in the multi-agent system community, so environment should be explicitly accounted for in the engineering of multi-agent system, working as a new design dimension for agent-oriented methodologies. At least two main ingredients shape the environment: environment abstractions - entities of the environment encapsulating some functions -, and topology abstractions - entities of environment that represent the (either logical or physical) spatial structure. In addition, the engineering of non-trivial multi-agent systems requires principles and mechanisms for supporting the management of the system representation complexity. These principles lead to the adoption of a multi-layered description, which could be used by designers to provide different levels of abstraction over multi-agent systems. The research in these fields has lead to the formulation of a new version of the SODA methodology where environment abstractions and layering principles are exploited for en- gineering multi-agent systems.

Dual Active Bridge based Battery Charger for Plug-in Hybrid Electric Vehicle with Charging Current Containing Low Frequency Ripple

High power density is strongly preferable for the on-board battery charger of Plug-in Hybrid Electric Vehicle (PHEV). Wide band gap devices, such as Gallium Nitride HEMTs are being explored to push to higher switching frequency and reduce passive component size. In this case, the bulk DC link capacitor of AC-DC Power Factor Correction (PFC) stage, which is usually necessary to store ripple power of two times the line frequency in a DC current charging system, becomes a major barrier on power density. If low frequency ripple is allowed in the battery, the DC link capacitance can be significantly reduced. This paper focuses on the operation of a battery charging system, which is comprised of one Full Bridge (FB) AC-DC stage and one Dual Active Bridge (DAB) DC-DC stage, with charging current containing low frequency ripple at two times line frequency, designated as sinusoidal charging. DAB operation under sinusoidal charging is investigated. Two types of control schemes are proposed and implemented in an experimental prototype. It is proved that closed loop current control is the better. Full system test including both FB AC-DC stage and DAB DC-DC stage verified the concept of sinusoidal charging, which may lead to potentially very high power density battery charger for PHEV.

Desarrollo de un sistema interactivo de procesado de una colección de documentos para clasificarlos en base a su temática

A día de hoy, existen millones de artículos en internet que tratan sobre diferentes temas. Los investigadores hacen búsquedas exhaustivas para encontrar aquellos artículos que encuentran más importantes, los cuales se van descargando en su ordenador llegando a tal extremo que la cantidad de documentos que pueden llegar a tener se vuelve casi inmanejable. El proyecto Calimaco, el cual se está llevando a cabo en el Laboratorio Decoroso Crespo, busca dar soporte a la tarea de búsqueda de información en el ámbito de la investigación, donde la cantidad de información existente es abrumadora. El objetivo es generar una visualización tridimensional de una serie de documentos (corpus), de manera que el usuario pueda explorarlo fácilmente. Además se pretende que dicho proceso se adapte a las necesidades y características particulares del usuario. Esto puede resultar muy útil cuando, por ejemplo, un investigador desea buscar información acerca de un determinado tema dentro de todos sus documentos, ya que el sistema los clasificará en base a dichos temas, permitiéndole acceder a la información relevante de manera rápida y sencilla. La división de este proyecto se compone de dos partes: la primera se corresponde al preprocesamiento de los documentos, mientras que la segunda se encarga de la visualización de los resultados, además de la interactuación del usuario. El trabajo realizado expuesto en esta memoria se sitúa dentro de la parte de preprocesamiento del proyecto Calimaco. La aportación a este proyecto ha consistido en la realización de pruebas y análisis de los resultados, diseño e implementación de una base de datos, e integración de ambas partes, creando una primera versión del sistema. Para comprobar el funcionamiento de esta primera versión se diseñó un plan de pruebas del sistema para medir el tiempo y la precisión.---ABSTRACT---Nowadays, there are millions of articles on the Internet that deal with different topics. Researchers do exhaustive searches to find those articles that are more important for them and download them to their computer, sometimes, reaching a point where the amount of downloaded documents is unmanageable. Calimaco project, which is being carried out at Laboratorio Decoroso Crespo, aims to provide a solution in the task of searching information in terms of investigation, where the amount of information is overwhelming. The goal is to create a tridimensional vision of a set of documents (corpus), so that the user can explore it easily. In addition, this process is intended to adapt to the personal needs and characteristics of the user. This can turn out to be useful when, for example, a researcher wants to seek information about a specific subject inside all his documents, because the system will classify them by subjects, allowing to access relevant information in a fast and easy way. This project is formed by two big sections: the first one corresponds to the pre-process of documents, while the second one is in charge of result visualization as well as the interaction with the user. This memory contains the explanation of the job done in the first part of the Calimaco project, which belongs to the pre-process of documents. The contributions done to the project are: development of tests and analysis of results, a design and implementation of a database, and an integration of both parts (pre-process of documents and result visualization) creating a first version of the system. To test the functioning of this first version, the author created a system test plan in order to gather information about execution time and accuracy.

The area code hypothesis revisited: Olfactory receptors and other related transmembrane receptors may function as the last digits in a cell surface code for assembling embryos

Recent evidence emerging from several laboratories, integrated with new data obtained by searching the genome databases, suggests that the area code hypothesis provides a good heuristic model for explaining the remarkable specificity of cell migration and tissue assembly that occurs throughout embryogenesis. The area code hypothesis proposes that cells assemble organisms, including their brains and nervous systems, with the aid of a molecular-addressing code that functions much like the country, area, regional, and local portions of the telephone dialing system. The complexity of the information required to code cells for the construction of entire organisms is so enormous that we assume that the code must make combinatorial use of members of large multigene families. Such a system would reuse the same receptors as molecular digits in various regions of the embryo, thus greatly reducing the total number of genes required. We present the hypothesis that members of the very large families of olfactory receptors and vomeronasal receptors fulfill the criteria proposed for area code molecules and could serve as the last digits in such a code. We discuss our evidence indicating that receptors of these families are expressed in many parts of developing embryos and suggest that they play a key functional role in cell recognition and targeting not only in the olfactory system but also throughout the brain and numerous other organs as they are assembled.

Empirical test of an agricultural landscape model: the importance of farmer preference for risk aversion and crop complexity

Developing models to predict the effects of social and economic change on agricultural landscapes is an important challenge. Model development often involves making decisions about which aspects of the system require detailed description and which are reasonably insensitive to the assumptions. However, important components of the system are often left out because parameter estimates are unavailable. In particular, measurements of the relative influence of different objectives, such as risk, environmental management, on farmer decision making, have proven difficult to quantify. We describe a model that can make predictions of land use on the basis of profit alone or with the inclusion of explicit additional objectives. Importantly, our model is specifically designed to use parameter estimates for additional objectives obtained via farmer interviews. By statistically comparing the outputs of this model with a large farm-level land-use data set, we show that cropping patterns in the United Kingdom contain a significant contribution from farmer’s preference for objectives other than profit. In particular, we found that risk aversion had an effect on the accuracy of model predictions, whereas preference for a particular number of crops grown was less important. While nonprofit objectives have frequently been identified as factors in farmers’ decision making, our results take this analysis further by demonstrating the relationship between these preferences and actual cropping patterns.

Energy system contributions to the special judo fitness test

Purpose: This study investigated the energy system contributions of judo athletes to the Special Judo Fitness Test (SJFT). Methods: Fourteen male judo athletes performed the SJFT, which comprised three periods of judo activity (A = 15 s, B and C = 30 s) interspersed with 10 s rest intervals. During this test, one athlete threw two others positioned 6 m from each other using the ippon-seoi-nage technique. The fractions of the aerobic, anaerobic alactic and anaerobic lactic systems were calculated based on oxygen uptake, the fast component of excess postexercise oxygen uptake, and changes in net blood lactate, respectively. The contribution of the three energy systems was compared using a repeated measures analysis of variance and Bonferroni's multiple comparisons test. Compound symmetry, or sphericity, was determined by Mauchly's test. A level of significance of 5% (P < .05) was adopted in all analyses. Results: The alactic energy system presented a higher (F = 20.9; P < .001; power observed = 1.0) contribution (86.8 +/- 23.6 kJ; 42.3 +/- 5.9%) during the test when compared with both aerobic (57.1 +/- 11.3 kJ; 28.2 +/- 2.9%) and lactic (58.9 +/- 12.1 kJ; 29.5 +/- 6.2%) energy systems (P < .001 for both comparisons). Conclusions: The higher alactic contribution seems to be a consequence of the high-intensity efforts performed during the test, and its intermittent nature. Thus, when using the SJFT, coaches are evaluating mainly their athletes' anaerobic alactic system, which can be considered to be the most predominant system contributing to the actions (techniques) performed in the match.

PV system modeling by five parameters and in situ test

This paper focuses on a novel formalization for assessing the five parameter modeling of a photovoltaic cell. An optimization procedure is used as a feasibility problem to find the parameters tuned at the open circuit, maximum power, and short circuit points in order to assess the data needed for plotting the I-V curve. A comparison with experimental results is presented for two monocrystalline PV modules.

PV system modeling by five parameters and in Situ test

This paper focuses on a novel formalization for assessing the five parameter modeling of a photovoltaic cell. An optimization procedure is used as a feasibility problem to find the parameters tuned at the open circuit, maximum power, and short circuit points in order to assess the data needed for plotting the I-V curve. A comparison with experimental results is presented for two monocrystalline PV modules.

Performance of the Vitek 2 system software version 5.03 in the bacterial identification and antimicrobial susceptibility test: evaluation study of clinical and reference strains of Gram-positive cocci

Introduction. The genera Enterococcus, Staphylococcus and Streptococcus are recognized as important Gram-positive human pathogens. The aim of this study was to evaluate the performance of Vitek 2 in identifying Gram-positive cocci and their antimicrobial susceptibilities. Methods. One hundred four isolates were analyzed to determine the accuracy of the automated system for identifying the bacteria and their susceptibility to oxacillin and vancomycin. Results. The system correctly identified 77.9% and 97.1% of the isolates at the species and genus levels, respectively. Additionally, 81.8% of the Vitek 2 results agreed with the known antimicrobial susceptibility profiles. Conclusion. Vitek 2 correctly identified the commonly isolated strains; however, the limitations of the method may lead to ambiguous findings.

Assessment of overlay masonry strengthening system under in-plane monotonic and cyclic loading using the diagonal tensile test

The development of novel strengthening techniques to address the seismic vulnerability of masonry elements is gradually leading to simpler, faster and more effective strengthening strategies. In particular, the use of fabric reinforced cementitious matrix systems is considered of great potential, given the increase of ductility achieved with simple and economic strengthening procedures. To assess the effectiveness of these strengthening systems, and considering that the seismic action is involved, one important component of the structural behaviour is the in-plane cyclic response. In this work is discussed the applicability of the diagonal tensile test for the assessment of the cyclic response of strengthened masonry. The results obtained allowed to assess the contribution of the strengthening system to the increase of the load carrying capacity of masonry elements, as well as to evaluate the damage evolution and the stiffness degradation mechanisms developing under cyclic loading.