The 2008 update of the Aspergillus nidulans genome annotation: A community effort

The identification and annotation of protein-coding genes is one of the primary goals of whole-genome sequencing projects, and the accuracy of predicting the primary protein products of gene expression is vital to the interpretation of the available data and the design of downstream functional applications. Nevertheless, the comprehensive annotation of eukaryotic genomes remains a considerable challenge. Many genomes submitted to public databases, including those of major model organisms, contain significant numbers of wrong and incomplete gene predictions. We present a community-based reannotation of the Aspergillus nidulans genome with the primary goal of increasing the number and quality of protein functional assignments through the careful review of experts in the field of fungal biology. (C) 2009 Elsevier Inc. All rights reserved.

Context-free and context-sensitive dynamics in recurrent neural networks

Continuous-valued recurrent neural networks can learn mechanisms for processing context-free languages. The dynamics of such networks is usually based on damped oscillation around fixed points in state space and requires that the dynamical components are arranged in certain ways. It is shown that qualitatively similar dynamics with similar constraints hold for a(n)b(n)c(n), a context-sensitive language. The additional difficulty with a(n)b(n)c(n), compared with the context-free language a(n)b(n), consists of 'counting up' and 'counting down' letters simultaneously. The network solution is to oscillate in two principal dimensions, one for counting up and one for counting down. This study focuses on the dynamics employed by the sequential cascaded network, in contrast to the simple recurrent network, and the use of backpropagation through time. Found solutions generalize well beyond training data, however, learning is not reliable. The contribution of this study lies in demonstrating how the dynamics in recurrent neural networks that process context-free languages can also be employed in processing some context-sensitive languages (traditionally thought of as requiring additional computation resources). This continuity of mechanism between language classes contributes to our understanding of neural networks in modelling language learning and processing.

On learning context-free and context-sensitive languages

The long short-term memory (LSTM) is not the only neural network which learns a context sensitive language. Second-order sequential cascaded networks (SCNs) are able to induce means from a finite fragment of a context-sensitive language for processing strings outside the training set. The dynamical behavior of the SCN is qualitatively distinct from that observed in LSTM networks. Differences in performance and dynamics are discussed.

Comportamento de cordeiros em pastejo de azevém (Lolium multiflorum) em diferentes fases fenológicas submetidos à adubação nitrogenada

O objetivo deste trabalho foi avaliar o efeito de nitrogênio (N) em pastagem de azevém (Lolium multiflorum Lam.), manejada à mesma altura em pastejo contínuo, sobre o comportamento ingestivo de cordeiros de corte. Utilizaram-se o azevém com quatro doses de N, empregando-se ureia comercial (45% de N) com aplicação única, sendo: 0 kg/ha de N; 75 kg/ha de N; 150 kg/ha de N; e 225 kg/ha de N. O período de avaliação foi de 63 dias, dividido em três períodos de 21, que corresponderam aos estágios de desenvolvimento das plantas desde a fase vegetativa até o florescimento. Em cada período os dias foram divididos em três turnos de avaliação comportamental: manhã (6:30 às 10:30), meio-dia (10:31 às 14:30) e tarde (14:31 às 18:30). Na análise dos períodos, os animais diminuíram a atividade de ócio em 0,3 min a cada dia de avanço no ciclo da pastagem, independentemente do turno de avaliação. Já para o consumo de água, não houve diferença entre as fases fenológicas (média de 1,8 min por dia). Os cordeiros reduziram o tempo de ruminação em 0,612; 0,660; e 0,060 min a cada dia de utilização da pastagem nos turnos da manhã (6 : 30 - 10 : 30), meio-dia (10:31 -14:30) e tarde (14:31 - 18:30), respectivamente, ao passo que para o pastejo os tempos destinados a essa atividade aumentaram 0,726; 1,104; e 0,354 min, respectivamente. Com relação às doses de N, não houve interferência (P > 0,05) sobre as atividades de ruminação (126,6 min) e consumo de água (10,5 min). Observou-se comportamento linear crescente (P < 0,05) para ócio em 0,108 min e decrescente para pastejo em 0,198 min para cada kg de N aplicado na pastagem. O estágio fenológico do azevém influenciou as atividades comportamentais dos cordeiros.

Effect of hay on performance of Holstein calves at suckling and post-weaning

The objective of this work was to evaluate the performance of Holstein calves in suckling and post-weaning phases, intensively managed during suckling in the absence or presence of hay. Twenty-four male Holstein calves, at an average age of 15 days and initial weight of 43 kg were used in the experiment. The experimental design was completely randomized, consisting of two treatments and six replications. The treatments were as follows: 1) suckling with milk substitute + initial concentrate for calves, ad libitum + temperate grass hay (oat/ryegrass), ad libitum; 2) suckling with milk substitute + initial concentrate for calves, ad libitum. No significant difference was found between treatments for weight gain and feed conversion. However, the supply of hay caused an increase in daily dry matter intake (2.127 vs 1.894 kg). The intake of hay promoted greater stimulus to consumption of concentrate and greater weight at weaning.

Partitioning taxon, phylogenetic and functional beta diversity into replacement and richness difference components

Copyright © 2013 John Wiley & Sons Ltd.

Gender differences in social support and leisure-time physical activity

OBJECTIVE To identify gender differences in social support dimensions’ effect on adults’ leisure-time physical activity maintenance, type, and time.METHODS Longitudinal study of 1,278 non-faculty public employees at a university in Rio de Janeiro, RJ, Southeastern Brazil. Physical activity was evaluated using a dichotomous question with a two-week reference period, and further questions concerning leisure-time physical activity type (individual or group) and time spent on the activity. Social support was measured with the Medical Outcomes Study Social Support Scale. For the analysis, logistic regression models were adjusted separately by gender.RESULTS A multinomial logistic regression showed an association between material support and individual activities among women (OR = 2.76; 95%CI 1.2;6.5). Affective support was associated with time spent on leisure-time physical activity only among men (OR = 1.80; 95%CI 1.1;3.2).CONCLUSIONS All dimensions of social support that were examined influenced either the type of, or the time spent on, leisure-time physical activity. In some social support dimensions, the associations detected varied by gender. Future studies should attempt to elucidate the mechanisms involved in these gender differences.

Degradabilidade in situ da jurema Preta (Mimosa tenuiflora) oriunda de caatinga raleada e enriquecida.

Resumo: Objetivou-se avaliar a degradação in situ da Jurema preta. Foram estimados os valores da degradação potencial e efetiva da matéria seca, proteína bruta e fibra em detergente neutro. A jurema preta apresenta bom potencial de degradação para matéria seca e fibra em detergente neutro, já para a proteína bruta, parece haver necessidade de ação enzimática pós rúmen para que seja melhor aproveitada. [In situ degradability of jurema preta (Mimosa tenuiflora) in thinned and enriched caatinga rangelands]. Abstract: We aimed with this manuscript to present the evaluation of in situ degradability of Jurema preta in thinned and enriched caatinga. Were estimated the potential and effective degradation of dry matter, crude protein and neutral detergent fiber. The jurema preta shrubs have good potential to dry matter and neutral detergent fiber degradation, but to crude protein, to maximize their harnessing the post rumen digestion is needed.

Propagation connectivity of random hypergraphs

We study the concept of propagation connectivity on random 3-uniform hypergraphs. This concept is inspired by a simple linear time algorithm for solving instances of certain constraint satisfaction problems. We derive upper and lower bounds for the propagation connectivity threshold, and point out some algorithmic implications.

Turva- ja opastevalojen ryhmävalvontakeskus

Tämä insinöörityö on dokumentti projektista, joka on tehty SF-Design Oy:n nimissä asiakasprojektina. Työssä käydään läpi turva- ja opastevalojen ryhmävalvontayksikön elektro-niikkasuunnittelu ja siihen tarvittavan mikrotietokoneen ohjaamiseen tarvittavan ohjelman suunnittelu ja kirjoittaminen. Työ jakautuu karkeasti jaoteltuna neljään osa-alueeseen. Ensiksi käydään läpi laitteiston elektroniikkasuunnittelu ja siihen liittyvää teoriaa. Seuraavaksi työssä käsitellään mikrotietokoneiden ohjelmistokehitystä ja käydään läpi työssä suunniteltu ja laadittu ohjelmisto STMicroelectronicsin ST62T10C-prosessorille. Lopuksi ennen suunnittelu- ja kehitysympäristöjen esittelyä käsitellään suunnitellun laitteiston testaus-, käyttö- ja asennustoimenpiteet. Aivan aluksi esitellään projektissa toteutettuun laitesuunnitteluun vaikuttaneet asiakkaan antama spesifikaatio ja 13.2.2003 voimaan astunut Euroopan parlamentin ja neuvoston asettama RoHS-direktiivi. Direktiivi vaikutti elektroniikkasuunnitteluun komponenttien valinnan osalta. Direktiivin mukaan sen voimaanastumispäivän jälkeen ei saa käyttää komponentteja, jotka sisältävät ympäristölle ja ihmisille vaarallisia aineita. Elektroniikkasuunnitteluosiossa suunnittelu on jaettuna toiminnallisiin osiin. Osiossa käy-dään läpi virtamuuntajien kalibrointi sekä jännitevahvistimen suunnittelu ja simulointi. Ky-seisessä osiossa käsitellään vielä prosessorin vaatimat erityiskytkennät, vikailmoitus-led-valojen ohjaukseen tarvittava kytkentä sekä ennen laitteiston vaatimien käyttöjännitteiden suunnittelua laitteistoon tarvittavien potentiovapaitten lähtöjen toteutus. Ohjelmistokehi-tysosiossa pohditaan mikrotietokoneen ohjelmoinnin perusteita, ennen kuin projektissa laadittua ohjelmaa käydään läpi. Projektissa laadittua koodia ei sen salaisuuden takia käydä yksityiskohtaisesti läpi tässä työssä. Projektissa käytettiin elektroniikkasuunnittelussa PADS-ohjelmistoja PowerLogic ja PowerPCB. Lisäksi käytettiin vahvistinkytkennän simulointiin OrCADin Capture CIS -ohjelmaa. Projektin työläimpään vaiheeseen, ohjelman suunnitteluun, kehitykseen ja kirjoittamiseen käytettiin Raisonancen STMicroelectronicsin mikrotietokoneille kehittämää ohjelmistokehitysympäristöä RIDE -ohjelmistoa. Elektroniikkasuunnittelussa käytetyt oh-jelmistot ovat hyvin yleisesti teollisuuden käytössä.

Ehrlichia canis -infektio : koiran eksoottisempi ehrlichioosi : tapausselostus

Mikael Granholm