Identification of novel molecular determinants of tissue mineralization in fish

The identification of genes involved in signaling and regulatory pathways, and matrix formation is paramount to the better understanding of the complex mechanisms of bone formation and mineralization, and critical to the successful development of therapies for human skeletal disorders. To achieve this objective, in vitro cell systems derived from skeletal tissues and able to mineralize their extracellular matrix have been used to identify genes differentially expressed during mineralization and possibly new markers of bone and cartilage homeostasis. Using cell systems of fish origin and techniques such as suppression subtractive hybridization and microarray hybridization, three genes never associated with mechanisms of calcification were identified: the calcium binding protein S100-like, the short-chain dehydrogenase/reductase sdr-like and the betaine homocysteine S-methyltransferase bhmt3. Analysis of the spatial-temporal expression of these 3 genes by qPCR and in situ hybridization revealed: (1) the up-regulation of sdr-like transcript during in vitro mineralization of gilthead seabream cell lines and its specificity for calcified tissues and differentiating osteoblasts; (2) the up-regulation of S100-like and the down-regulation of bhmt3 during in vitro mineralization and the central role of both genes in cartilaginous tissues undergoing endo/perichondral mineralization in juvenile fish. While expression of S100-like and bhmt3 was restricted to calcified tissues, sdr-like transcript was also detected in soft tissues, in particular in tissues of the gastrointestinal tract. Functional analysis of gene promoters revealed the transcriptional regulation of the 3 genes by known regulators of osteoblast and chondrocyte differentiation/mineralization: RUNX2 and RAR (sdr-like), ETS1 (s100-like; bhmt3), SP1 and MEF2c (bhmt3). The evolutionary relationship of the different orthologs and paralogs identified within the scope of this work was also inferred from taxonomic and phylogenetic analyses and revealed novel protein subfamilies (S100-like and Sdr-like) and the explosive diversity of Bhmt family in particular fish groups (Neoteleostei). Altogether our results contribute with new data on SDR, S100 and BHMT proteins, evidencing for the first time the role for these three proteins in mechanisms of mineralization in fish and emphasized their potential as markers of mineralizing cartilage and bone in developing fish.

Virtual Radio Engine

Software Defined Radio (SDR) hardware platforms use parallel architectures. Current concepts of developing applications (such as WLAN) for these platforms are complex, because developers describe an application with hardware-specifics that are relevant to parallelism such as mapping and scheduling. To reduce this complexity, we have developed a new programming approach for SDR applications, called Virtual Radio Engine (VRE). VRE defines a language for describing applications, and a tool chain that consists of a compiler kernel and other tools (such as a code generator) to generate executables. The thesis presents this concept, as well as describes the language and the compiler kernel that have been developed by the author. The language is hardware-independent, i.e., developers describe tasks and dependencies between them. The compiler kernel performs automatic parallelization, i.e., it is capable of transforming a hardware-independent program into a hardware-specific program by solving hardware-specifics, in particular mapping, scheduling and synchronizations. Thus, VRE simplifies programming tasks as developers do not solve hardware-specifics manually.

Lokalisation und Funktion von Mitgliedern der Familie der short-chain Dehydrogenasen/Reduktasen in Dictyostelium discoideum

Dictyostelium discoideum wird als Modellorganismus für diverse Krankheitsbilder benutzt. Darunter zählen lysosomale, neurodegenerative Störungen sowie Stoffwechselerkrankungen. Werden diese Amöben mit einer Fettsäure gefüttert, so wird die Biogenese von lipid droplets (LDs) initiiert. Diese dynamischen Organellen dienen der Neutrallipidspeicherung. Das Proteom der LDs konnte für D. discoideum entschlüsselt werden. Unter den rund 70 Proteinen, befinden sich ca. 15, die eine Funktion im Lipidstoffwechsel haben. Darunter befinden sich auch Mitglieder der Enzymklasse der short-shain Dehydrogenasen/Reduktasen. Diese zeigen, wie viele andere LD-Proteine auch, eine duale Lokalisation im Endoplasmatischen Retikulum (ER) und auf LDs. In dieser Arbeit konnten die Sequenzen, die den Wechsel von einer doppelte Phospholipidschicht (ER) auf eine einfache Membran (LDs) möglich machen, entschlüsselt werden. Im Fall der Proteine SdrB/C/D/E/F handelt es sich dabei um ein membranständiges N-terminales Peptid gefolgt von einer Membrandomäne. Helix-brechende Aminosäuren wie Prolin und Glycin in diesen Domänen erzeugen einen Knick, sodass sowohl die C- als auch N-Termini fusioniert an ein Reporterprotein cytoplasmatisch lokalisieren können. Direkt nach der Membrandomäne befindet sich ein kurzer Abschnitt mit basischen, positiv geladenen Aminosäuren, die mit der negativ geladenen Oberfläche der LDs interagieren. Die Membrandomäne allein ist zwar für eine ER-Lokalisation ausreichend, eine LD-Verteilung kann jedoch nur in Kombination mit dem basischen Abschnitt erfolgen. Des Weiteren konnte die Lokalisation von SdrG aufgeklärt werden. Dieses Protein lokalisiert sowohl im ER, als auch auf LDs und den Peroxisomen. Die knockouts einzelner Sdr-Gene zeigten keinen Phänotyp. Auch der Doppel-knockout von SdrB und SdrC blieb Phänotyp-frei. Aus diesem Grund wurden die tandemartig im Genom vorliegenden Gene SdrD-F in einem Triple-knockout untersucht, ebenso wie ein Penta-knockout der Gene SdrB-F. Weiterhin konnten keine Auswirkungen auf die Phagocytose bzw. auf die Verwertung von Fettsäuren und die Mitoserate festgestellt werden. Ebenfalls verläuft der Aufbau und die Degradation von lipid droplets wildtypisch. Mittels Gaschromatographie gekoppelter Massenspektrometrie konnte jedoch ein geringer Unterschied in der Fettsäurekomposition der LDs festgestellt werden. Sobald diese fünf Proteine nicht mehr vorhanden sind, werden 5% weniger 18:1 Δ11 Fettsäuren gebildet und es verbleiben mehr 16:0 Fettsäuren in den LDs. Eine Übernahme der Funktion als Δ9 Desaturase, nach dem Abschnüren der LDs vom Endoplasmatischen Retikulum ist wahrscheinlich.

Exploring behavioural change through an agent-oriented system dynamics model: the use of personal protective equipment among pesticide applicators in Colombia

The misuse of Personal Protective Equipment results in health risk among smallholders in developing countries, and education is often proposed to promote safer practices. However, evidence point to limited effects of education. This paper presents a System Dynamics model which allows the identification of risk-minimizing policies for behavioural change. The model is based on the IAC framework and survey data. It represents farmers' decision-making from an agent-oriented standpoint. The most successful intervention strategy was the one which intervened in the long term, targeted key stocks in the systems and was diversified. However, the results suggest that, under these conditions, no policy is able to trigger a self sustaining behavioural change. Two implementation approaches were suggested by experts. One, based on constant social control, corresponds to a change of the current model's parameters. The other, based on participation, would lead farmers to new thinking, i.e. changes in their decision-making structure.

Steering without Circe : attending to reinforcing loops in social systems

Relating system dynamics to the broad systems movement, the key notion is that reinforcing loops deserve no less attention than balancing loops. Three specific propositions follow. First, since reinforcing loops arise in surprising places, investigations of complex systems must consider their possible existence and potential impact. Second, because the strength of reinforcing loops can be misinferred - we include an example from the field of servomechanisms - computer simulation can be essential. Be it project management, corporate growth or inventory oscillation, simulation helps to assess consequences of reinforcing loops and options for interventions. Third, in social systems the consequences of reinforcing loops are not inevitable. Examples concerning globalization illustrate how difficult it might be to challenge such assumptions. However, system dynamics and ideas from contemporary social theory help to show that even the most complex social systems are, in principle, subject to human influence. In conclusion, by employing these ideas, by attending to reinforcing as well as balancing loops, system dynamics work can improve the understanding of social systems and illuminate our choices when attempting to steer them.

With a little help from our friends: how system dynamics and soft OR can learn from each other

At its inception, the paradigm of system dynamics was deliberately made distinct from that of OR. Yet developments in soft OR now have much in common with current system dynamics modeling practice. This article briefly traces the parallel development of system dynamics and soft OR, and argues that a dialogue between the two would be mutually rewarding. to support this claim, examples of soft OR tools are described along with some of the field’s philosophical grounding and current issues. Potential benefits resulting from a dialogue are explored, with particular emphasis on the methodological framework of system dynamics and the need for a complementarist approach. The article closes with some suggestions on how to begin learning from.

Packing triangles in low degree graphs and indifference graphs

We consider the problems of finding the maximum number of vertex-disjoint triangles (VTP) and edge-disjoint triangles (ETP) in a simple graph. Both problems are NP-hard. The algorithm with the best approximation ratio known so far for these problems has ratio 3/2 + epsilon, a result that follows from a more general algorithm for set packing obtained by Hurkens and Schrijver [On the size of systems of sets every t of which have an SDR, with an application to the worst-case ratio of heuristics for packing problems, SIAM J. Discrete Math. 2(1) (1989) 68-72]. We present improvements on the approximation ratio for restricted cases of VTP and ETP that are known to be APX-hard: we give an approximation algorithm for VTP on graphs with maximum degree 4 with ratio slightly less than 1.2, and for ETP on graphs with maximum degree 5 with ratio 4/3. We also present an exact linear-time algorithm for VTP on the class of indifference graphs. (C) 2007 Elsevier B.V. All rights reserved.

Calibração cega de receptores cinco-portas baseada em separação cega de fontes

The exponential growth in the applications of radio frequency (RF) is accompanied by great challenges as more efficient use of spectrum as in the design of new architectures for multi-standard receivers or software defined radio (SDR) . The key challenge in designing architecture of the software defined radio is the implementation of a wide-band receiver, reconfigurable, low cost, low power consumption, higher level of integration and flexibility. As a new solution of SDR design, a direct demodulator architecture, based on fiveport technology, or multi-port demodulator, has been proposed. However, the use of the five-port as a direct-conversion receiver requires an I/Q calibration (or regeneration) procedure in order to generate the in-phase (I) and quadrature (Q) components of the transmitted baseband signal. In this work, we propose to evaluate the performance of a blind calibration technique without additional knowledge about training or pilot sequences of the transmitted signal based on independent component analysis for the regeneration of I/Q five-port downconversion, by exploiting the information on the statistical properties of the three output signals

Efeitos da fisioterapia respiratória convencional versus aumento do fluxo expiratório na saturação de O2, freqüência cardíaca e freqüência respiratória, em prematuros no período pós-extubação

INTRODUÇÃO: Recém-nascidos (RN) prematuros apresentam elevada morbidade respiratória e necessidade de ventilação mecânica, assim, a fisioterapia respiratória é parte integrante da assistência neonatal. Objetivo: Comparar os efeitos da fisioterapia respiratória convencional (FRC) versus aumento do fluxo expiratório (AFE), na saturação de O2 (SpO2), freqüência cardíaca (FC) e na freqüência respiratória (FR) em prematuros no período pós-extubação. Método: Ensaio clínico randomizado realizado na UTI Neonatal do Hospital das Clínicas de BotucatuUNESP, comparando duas técnicas fisioterapêuticas, aplicadas em recém-nascidos prematuros, nas primeiras 48 horas pós-extubação. Para a análise estatística foram utilizados o teste t Student, Mann-Whitney, Qui-quadrado e o teste exato de Fisher, com nível de significância em 5%. Resultados: Os dois grupos de estudo: Grupo FRC (n= 20) e grupo AFE (n= 20), não diferiram quanto à idade gestacional (média de 28 semanas) e peso de nascimento (média de 1100 gramas). em ambos os grupos a síndrome do desconforto respiratório (SDR) foi o principal diagnóstico. A mediana da idade no início da fisioterapia foi de sete dias no grupo AFE e 11 dias na FRC. Ambas as técnicas produziram aumento significativo da SpO2 aos 10 e 30 minutos, sem alterações na FR. A FC aumentou significativamente após a FRC e não se alterou após o AFE. Conclusão: Os resultados sugerem que o AFE é menos estressante que a FRC e pode ser aplicado em prematuros no período pós-extubação. Nestes recém-nascidos o AFE parece ser seguro e benéfico a curto prazo.

Effects of N-acetylcysteine on sucrose-rich diet-induced hyperglycaemia, dyslipidemia and oxidative stress in rats

This study examined whether sucrose-rich diet (SRD)-induced hyperglycaemia, dyslipidemia and oxidative stress may be inhibited by N-acetylcysteine (C5H9-NO3S), an organosulfur from Allium plants. Male Wistar 40 rats were divided into four groups (n = 10): (C) given standard chow and water; (N) receiving standard chow and 2 mg/l N-acetylcysteine in its drinking water; (SRD) given standard chow and 30% sucrose in its drinking water; and (SRD-N) receiving standard chow, 30% sucrose and N-acetylcysteine in its drinking water. After 30 days of treatment, SRD rats had obesity with increased abdominal circumference, hyperglycaemia, by dyslipidemia and hepatic triacylglycerol accumulation. These adverse effects were associated with oxidative stress and depressed lipid degradation in hepatic tissue. The SRD adverse effects were not observed in SDR-N rats. N-Acetylcysteine reduced the oxidative stress, enhancing glutathione-peroxidase activity, and normalizing lipid hydroperoxyde, reduced glutathione and superoxide dismutase in hepatic tissue of SRD-N rats. The beta-hydroxyacyl coenzyme-A dehydrogenase and citrate-synthase activities were increased in SRD-N rats, indicating enhanced lipid degradation in hepatic tissue as compared to SRD. SRD-N rats had reduced serum oxidative stress and diminished glucose, triacylglycerol, very-low-density lipoprotein (VLDL), oxidized low-density lipoprotein (alpha-LDL) and cholesterol/highdensity lipoprotein (HDL) ratio in relation to SRD. In conclusion, NAC offers promising therapeutic values in prevention of dyslipidemic profile and alleviation of hyperglycaemia in high-sucrose intake condition by improving antioxidant defences. N-Acetylcysteine had also effects preventing metabolic shifting in hepatic tissue, thus enhancing fat degradation and reducing body weight gain in conditions of excess sucrose intake. The application of this agent in food system via exogenous addition may be feasible and beneficial for antioxidant protection. (c) 2006 Elsevier B.V All rights reserved.

Effect of airborne particle abrasion protocols on surface topography of Y-TZP ceramic

This study aimed to evaluate Y-TZP surface after different airborne particle abrasion protocols. Seventy-six Y-TZP ceramic blocks (5×4×4) mm3 were sintered and polished. Specimens were randomly divided into 19 groups (n=4) according to control group and 3 factors: a) protocol duration (2 and 4 s); b) particle size (30 μm, alumina coated silica particle; 45 μm, alumina particle; and 145 μm, alumina particle) and; c) pressure (1.5, 2.5 and 4.5 bar). Airborne particle abrasion was performed following a strict protocol. For qualitative and quantitative results, topography surfaces were analyzed in a digital optical profilometer (Interference Microscopic), using different roughness parameters (Ra, Rq, Rz, X-crossing, Mr1, Mr2 and Sdr) and 3D images. Surface roughness also was analyzed following the primer and silane applications on Y-TZP surfaces. One-way ANOVA revealed that treatments (application period, particle size and pressure of particle blasting) provided significant difference for all roughness parameters. The Tukey test determined that the significant differences between groups were different among roughness parameters. In qualitative analysis, the bonding agent application reduced roughness, filing the valleys in the surface. The protocols performed in this study verified that application period, particle size and pressure influenced the topographic pattern and amplitude of roughness.

Doenças respiratórias neonatais em prematuros de mães hipertensas e normotensas

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Maturidade pulmonar fetal em gestações complicadas por diabete ou hiperglicemia leve

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Modo de vida na várzea: políticas sociais e nova ruralidade: estudo em uma localidade da Reserva de Desenvolvimento Sustentável Mamirauá

Esta dissertação é um estudo sobre as ações em torno do desenvolvimento sustentável e de políticas não agrícolas para as pequenas populações rurais, a partir dos anos 80 e 90. Com a interiorização das políticas, o Estado se torna mais presente nas regiões interioranas redimensionando o mundo rural e suas dinâmicas locais. Neste sentido, um novo rural emerge com as ações políticas que chegam às populações mais distantes expondo o modo de vida a novas situações. Este estudo objetivou analisar as mudanças na organização social e econômica dos moradores da localidade rural de Vila Alencar da Reserva de Desenvolvimento Sustentável Mamirauá (RDSM), no estado do Amazonas, decorrentes da criação de uma reserva de desenvolvimento sustentável (RDS) e das ações institucionalizadas por políticas de Estado. A análise teórica foi fundamentada na noção de habitus e do campo socioambiental da Reserva Mamirauá. Realizaram-se também análises entre as famílias a partir do tempo de união conjugal, com a finalidade de identificar as mudanças ocorridas entre duas gerações familiares. Constatou-se neste estudo que a organização familiar em Vila Alencar se desenvolve levando em consideração as práticas locais e também participam das ações intervencionistas através das políticas sociais por meio do Programa Bolsa Família, das aposentadorias rurais e das atividades em torno do manejo sustentável dos recursos naturais, que estão em sua maioria associadas ao manejo de ecoturismo, a exemplo, da prestação de serviços como guia turístico, auxiliar de cozinha, copeira e carpintaria para a pousada de ecoturismo da RDSM. A combinação de atividades agrícolas, nãoagrícolas e a complementação de renda por benefícios sociais assumem papel importante na composição da renda familiar, o que traz novas perspectivas à reprodução social. O estudo mostrou que as políticas de desenvolvimento sustentável bem como as políticas de benefícios sociais tornam favorável à organização familiar das localidades rurais as características de feições modernizadoras e atrativas do conforto urbano, sobretudo pela expectativa da compra de uma casa na cidade e de melhores condições de qualificação aos filhos para prosperarem em alguma profissão. Aos jovens são delegadas outras responsabilidades que não se inserem exclusivamente no contexto produtivo do trabalho familiar.