MAPI: towards the integrated exploitation of bioinformatics Web Services.

BACKGROUND. Bioinformatics is commonly featured as a well assorted list of available web resources. Although diversity of services is positive in general, the proliferation of tools, their dispersion and heterogeneity complicate the integrated exploitation of such data processing capacity. RESULTS. To facilitate the construction of software clients and make integrated use of this variety of tools, we present a modular programmatic application interface (MAPI) that provides the necessary functionality for uniform representation of Web Services metadata descriptors including their management and invocation protocols of the services which they represent. This document describes the main functionality of the framework and how it can be used to facilitate the deployment of new software under a unified structure of bioinformatics Web Services. A notable feature of MAPI is the modular organization of the functionality into different modules associated with specific tasks. This means that only the modules needed for the client have to be installed, and that the module functionality can be extended without the need for re-writing the software client. CONCLUSIONS. The potential utility and versatility of the software library has been demonstrated by the implementation of several currently available clients that cover different aspects of integrated data processing, ranging from service discovery to service invocation with advanced features such as workflows composition and asynchronous services calls to multiple types of Web Services including those registered in repositories (e.g. GRID-based, SOAP, BioMOBY, R-bioconductor, and others).

Towards a User-Friendly Platform for Building Language Resources based on Web Services

This paper presents the platform developed in the PANACEA project, a distributed factory that automates the stages involved in the acquisition, production, updating and maintenance of Language Resources required by Machine Translation and other Language Technologies. We adopt a set of tools that have been successfully used in the Bioinformatics field, they are adapted to the needs of our field and used to deploy web services, which can be combined to build more complex processing chains (workflows). This paper describes the platform and its different components (web services, registry, workflows, social network and interoperability). We demonstrate the scalability of the platform by carrying out a set of massive data experiments. Finally, a validation of the platform across a set of required criteria proves its usability for different types of users (non-technical users and providers).

Integração de sistema educativo Cabo-verdiano utilizando Web Services O caso das matrículas

O sistema educativo Cabo-verdiano é um universo constituído por escolas públicas e privadas, do nível pré-escolar ao nível do ensino superior. Dentro desse sistema nós vamos fundamentar os processos administrativos, que foca basicamente o processo de matrícula do aluno, no sistema de ensino vigente, até deixar o sistema, incluindo também o processo de emissão de certificados, visto que no acto das matrículas são requeridas certificados do ano transacto. A proposta de Integração, é a utilização do poder das tecnologias de comunicação e informação para interligar as instituições de ensino, de forma que a matricula dos alunos não seja algo cansativo com elevados processos burocráticos e custoso, para quem quer seguir os seus estudos, e também tornar a gestão do sistema mais simples. O trabalho irá focar basicamente o objecto aluno, e todos os níveis de ensino, porque o aluno é o actor no sistema, quem irá interagir (Inscrever, solicitar, transferir e ser avaliado) nos diversos níveis de ensino. O aluno passa pelos diversos sistemas, na medida que pode passar do sistema de ensino básico, para o ensino secundário ao ensino superior. Contudo o aluno será o mesmo, consequentemente a identidade do aluno será a mesma para os diversos sistemas, o que altera são as avaliações e os planos curriculares, criando um histórico do aluno. Ele tem um ciclo de vida dentro do sistema de ensino. No entanto o estudo permitiu concluir, que o sistema educativo apresenta profundas lacunas no que tange a sua infra-estrutura tecnológica, que lhes permitirá ter mais dinâmica no processo de matrícula e emissão de certificados e na troca de informação entre os estabelecimentos, há dificuldade em criar um histórico do aluno de forma automática com toda a sua avaliação durante o seu ciclo de estudo, do primário ao superior. A proposta de tecnologias de integração entre as instituições, é baseado em métodos, nomeadamente, utilizando Web Services, que é um protocolo simples, que permite a interoperabilidade entre diversos sistemas. Funciona com o protocolo HTTP/HTTPs, que pode ser configurado e acedido facilmente nos Sistemas de Informação. As tecnologias Web constituem um excelente meio de para atingir o objectivo preconizado. Utilizando-as, as escolas poderão construir um sistema (Intranet), que pode ser acedida por todos as escolas e instituições do sistema educativo, com grandes benefícios, quer em termos pedagógicos como administrativo das instituições permitindo assim a partilha das informações internas, melhorando a comunicação entre os vários intervenientes.

Web Services for Bayesian Learning

In this demonstration we present our web services to perform Bayesian learning for classification tasks.

Composing Web Services

Web-palvelut muodostavat keskeisen osan semanttista web:iä. Ne mahdollistavat nykyaikaisen ja tehokkaan välineistön hajautettuun laskentaan ja luovat perustan palveluperustaisille arkkitehtuureille. Verkottunut automatisoitu liiketoiminta edellyttää jatkuvaa aktiivisuutta kaikilta osapuolilta. Lisäksi sitä tukevan järjestelmäntulee olla joustava ja sen tulee tukea monipuolista toiminnallisuutta. Nämä tavoitteet voidaan saavuttamaan yhdistämällä web-palveluita. Yhdistämisprosessi muodostuu joukosta tehtäviä kuten esim. palveluiden mallintaminen, palveluiden koostaminen, palveluiden suorittaminen ja tarkistaminen. Työssä on toteutettu yksinkertainen liiketoimintaprosessi. Toteutuksen osalta tarkasteltiin vaihtoehtoisia standardeja ja toteutustekniikoita. Myös suorituksen optimointiin liittyvät näkökulmat pyrittiin ottamaan huomioon.

The design and implementation of a standards-based mobile messaging platform - case WAP Push Proxy Gateway

Tässä diplomityössä perehdytään WAP:in Push -viitekehykseen. WAP-standardit määrittelevät kuinka Internet-tyyppisiä palveluita, joita voidaan käyttää erilaisia mobiileja päätelaiteitteita käyttäen, toteutetaan tehokkaalla ja verkkoteknologiasta riippumattomalla tavalla. WAP pohjautuu Internet:iin, mutta huomioi pienten päätelaitteiden ja mobiiliverkkojen rajoitukset ja erikoisominaisuudet. WAP Push viitekehys määrittelee verkon aloittaman palvelusisällön toimittamisen. Työn teoriaosassa käydään läpi yleinen WAP-arkkitehtuuri ja WAP-protokollapino käyttäen vertailukohtina lanka-Internetin arkkitehtuuria ja protokollapinoa. Edellistä perustana käyttäen tutustaan WAP Push -viitekehykseen. Käytännönosassa kuvataan WAP Push -välityspalvelimen suunnittelu ja kehitystyö. WAP Push -välityspalvelin on keskeinen verkkoelementti WAP Push -viitekehyksessä. WAP Push -välityspalvelin yhdistää Internetin ja mobiiliverkon tavalla, joka piilottaa teknologiaeroavaisuudet Internetissä olevalta palveluntuottajalta.

Web Services In Symbian OS

This thesis presents different aspects of Web Services usage in Symbian OS that is an operating system for handheld devices. The practical part of the work was to develop Symbian OS client application for Web Services. It produced four reusable software components. XML enables platform and programming language independent services. Web Services use XML to create standardized message oriented services that are accessed through HTTP. Web Services are moving towards dynamic B2B interaction. Web Services increases the amount of transferred data, which is not desirable in mobile networks where transfer speed is slower than in the traditional networks. However the modern mobile networks are able to transfer the extra payload with reasonable time. XML processing is not a big problem. Web Services can be accessed from the modern mobile devices and they can cut down the development costs.

Web Services osana sovellusintegraatiota toiminnanohjausjärjestelmässä

Työssä esitellään Web Services -konseptia ja sovellusintegraatiota, sekä toteutetaan toiminnanohjausjärjestelmästä yrityksen asiakkaalle tietoja välittävään palveluun tuki Web Services -arkkitehtuurille. Palvelun tehtävänä on huolehtia yrityksen ja sen liiketoimintakumppaneiden välisestä XML-pohjaisesta viestiliikenteestä. Työn teoriaosassa perehdytään sovellusintegraatioon ja sen osa-alueisiin, Web Services -konseptiin ja -standardeihin sekä sen kanssa kilpaileviin tekniikoihin. Käytännön osuudessa toteutetaan paperiteollisuusyrityksen tilaus- ja toimitustietoja XML:n avulla lähettävään Java-pohjaiseen järjestelmään tuki SOAP-viesteille, sekä WSDL-kuvaukset palveluille. Työssä tutkitaan Web Services -arkkitehtuurin soveltuvuutta ja implementoinnin helppoutta toimintaohjausjärjestelmään. Tuloksena todetaan Web Services -arkkitehtuurin olevan mielenkiintoinen ja monella tapaa integrointia helpottava tekniikka. Arkkitehtuurin standardien puutteiden ja varhaisten versioiden takia tekniikan todetaan kuitenkin olevan monelta osin riittämätön ja epäkypsä toteuttamaan yritysten kriittisten järjestelmien integrointia.

BioSWR - Semantic Web services Registry for Bioinformatics

Article About the Authors Metrics Comments Related Content Abstract Introduction Functionality Implementation Discussion Acknowledgments Author Contributions References Reader Comments (0) Figures Abstract Despite of the variety of available Web services registries specially aimed at Life Sciences, their scope is usually restricted to a limited set of well-defined types of services. While dedicated registries are generally tied to a particular format, general-purpose ones are more adherent to standards and usually rely on Web Service Definition Language (WSDL). Although WSDL is quite flexible to support common Web services types, its lack of semantic expressiveness led to various initiatives to describe Web services via ontology languages. Nevertheless, WSDL 2.0 descriptions gained a standard representation based on Web Ontology Language (OWL). BioSWR is a novel Web services registry that provides standard Resource Description Framework (RDF) based Web services descriptions along with the traditional WSDL based ones. The registry provides Web-based interface for Web services registration, querying and annotation, and is also accessible programmatically via Representational State Transfer (REST) API or using a SPARQL Protocol and RDF Query Language. BioSWR server is located at http://inb.bsc.es/BioSWR/and its code is available at https://sourceforge.net/projects/bioswr/​under the LGPL license.

Web services to link interlibrary software with OCLC WorldShare

Purpose - This article describes the use of web services to interconnect the GTBib interlibrary loan program with the OCLC WorldShare platform. Design/methodology/approach - We describe the current problem of duplication of procedures in libraries that have added their collections to the OCLC WorldCat catalogue in recent years and are therefore more likely to receive interlibrary loan requests through the WorldShare Platform. Findings - A solution that uses web services to insert and retrieve requests between the two systems is presented. Autonomous agents periodically check the status of the requests and keep them updated and synchronized. These agents also inform the library staff of any variation or inconsistency that is detected. Practical Implications - This technology reduces process management time by making it unnecessary to introduce the request data in both systems. Agents are used to check the consistency of statuses between the two systems, thus avoiding errors and omissions and improving the efficiency of the whole interlibrary loan process. Originality/value - This paper describes in detail the technical aspects of the solution as a reference for the development of future applications.

Web services enhanced interoperable construction products catalogue

This paper presents a new approach to achieving interoperability between Web-based construction products catalogues. It first introduces the current development of electronic catalogues of construction products. The common system architecture of Web-based electronic products catalogues is discussed, which is followed by a discussion on construction products information standardization and the latest distributed-systems technologies for the communication and exchange of construction products information. The latter part of this paper presents a model of interoperable Web-based construction products catalogue and an implementation of Web services in E-commerce systems to enable the sharing of construction products information.

Intelligent wireless web services: context-aware computing in construction-logistics supply chain

The construction industry has incurred a considerable amount of waste as a result of poor logistics supply chain network management. Therefore, managing logistics in the construction industry is critical. An effective logistic system ensures delivery of the right products and services to the right players at the right time while minimising costs and rewarding all sectors based on value added to the supply chain. This paper reports on an on-going research study on the concept of context-aware services delivery in the construction project supply chain logistics. As part of the emerging wireless technologies, an Intelligent Wireless Web (IWW) using context-aware computing capability represents the next generation ICT application to construction-logistics management. This intelligent system has the potential of serving and improving the construction logistics through access to context-specific data, information and services. Existing mobile communication deployments in the construction industry rely on static modes of information delivery and do not take into account the worker’s changing context and dynamic project conditions. The major problems in these applications are lack of context-specificity in the distribution of information, services and other project resources, and lack of cohesion with the existing desktop based ICT infrastructure. The research works focus on identifying the context dimension such as user context, environmental context and project context, selection of technologies to capture context-parameters such wireless sensors and RFID, selection of supporting technologies such as wireless communication, Semantic Web, Web Services, agents, etc. The process of integration of Context-Aware Computing and Web-Services to facilitate the creation of intelligent collaboration environment for managing construction logistics will take into account all the necessary critical parameters such as storage, transportation, distribution, assembly, etc. within off and on-site project.