Isolation and characterization of microsatellite DNA markers for spinner dolphin (Stenella longirostris)

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Size at maturity of Atlantoraja platana (Gunther, 1880) (Chondrichthyes : Rajidae : Arhynchobatinae) in the south-west Atlantic Ocean

The sexual development of Atlantoraja platana from the south-west Atlantic Ocean was analysed. According to the reproductive variables considered for both sexes, males were found to mature at 620 mm and females at 715 mm total length. (c) 2008 The Authors Journal compilation (c) 2008 The Fisheries Society of the British Isles.

Using Efinol (R) L during transportation of marbled hatchetfish, Carnegiella strigata (Gunther)

The objective of this experiment was to test the efficacy of a probiotic (Efinol (R) L) during transportation of marbled hatchetfish, Carnegiella strigata. Wild specimens were captured from a small stream and transported for 24 h in plastic fish boxes with a probiotic (10 mg L-1) and probiotic-free water. The boxes were sampled at 3. 12 and 24 h of transport. At the end of the experiment, the survival rate was close to.100%) in both treatments. Dissolved oxygen diminished with time in both treatments, but the probiotic group had significantly higher levels. Conductivity. pH and ammonia increased significantly during the transport. demonstrating higher levels in the probiotic-free group. Fish from both treatments presented very high net Na+ and K+ effluxes after 3 h of transport. At 24 h, net K+ effluxes in fish of the probiotic treatment reached values close to zero and a significantly lower Na+ efflux was observed. Cortisol levels in both treatments at 3 and 12 h were significantly higher than that in control samples. Higher body cortisol levels were observed in the probiotic-frec group than that in the probiotic group at 3 and 12 h. The results demonstrate that addition of a probiotic during fish transport improves water quality and leads to fish presenting a lower stress response intensity.

Physiological responses associated with capture and crowding stress in matrinxã Brycon cephalus (Gunther, 1869)

The dynamics of plasma cortisol, blood glucose, plasma chloride and liver glycogen were investigated in matrinxã (Brycon cephalus) submitted to capture and various periods of crowding. A total of 400 fish (700 ± 22 g weight) were distributed in four ponds divided into four 50-m2 squares (25 fish/square, 350 gL-1), where they were acclimated for 30 days. On the sampling day, after 24 h without food, all fish from three squares were transferred to the fourth square. Six fish were sampled before the procedure (control group, zero time) and 1, 3, 6 and 24 h after the capture and crowding. Each sampling was performed in a different pond to prevent additional stress. Fish were anaesthetized and blood and liver collected for biochemical analysis. Water temperature, pH, dissolved oxygen, alkalinity, ammonia and nitrite levels were within acceptable levels for matrinxã rearing. Slight but not significant increases were verified in plasma cortisol and blood glucose levels, as were decreases in plasma chloride and liver glycogen levels. The results suggest that matrinxã is highly tolerant to the procedures of capture and short-term crowding.

A simple protocol for a low invasive DNA accessing in Stenella longirostris (Cetacea: Delphinidae)

The most significant studies about the spinner dolphin (Stenella longirostris) in the Southwestern Atlantic Ocean were conducted in Fernando de Noronha Archipelago, off Northeastern Brazil. The continuity of these studies depends upon the development of non-invasive methods. In this work, we present results from the skin swabbing sampling procedure for this species. We tested the performance of this method for nuclear and mitochondrial DNA analysis, unknown for this population. A total of skin 161 samples were collected during two expeditions. After the contacts the most of the dolphins remained close to the boat. Microsatellites markers and cytochrome b region primers were evaluated and the respective fragments were successfully amplified. Thus, skin swabbing may be considered an efficient strategy to obtain tissue samples for spinner dolphin genetic analysis in Fernando de Noronha Archipelago.

Indução a espermiação e criopreservação espermática de Brycon cephalus (Gunther, 1869) (teleostei: characidae)

Pós-graduação em Ciência e Tecnologia Animal - FEIS

Caracterização e validação de marcadores microssatélites para golfinhos-rotadores (Stenella longirostris)

A utilização de marcadores microssatélites tem auxiliado os programas de conservação, colaborando na definição de estratégias para proteção e manejo de populações de animais silvestres.Alguns microssatélites já foram desenvolvidos para algumas espécies de cetáceos, inclusive para os golfinhos-rotadores (Stenella longisrostris), aos quais recentemente foram publicados oito microssatélites espécie-específicos. A identificação e caracterização de novos SSR se faz necessário para ampliação das possibilidades de uso desses marcadores em estudos da Biologia e conservação dos golfinhos-rotadores. Deste modo, o presente projeto teve como objetivo dar continuidade a um trabalho de desenvolvimento de microssatélites para S. Longirostris iniciado no Departamento de Genética dessa Universidade, realizando a caracterização e validação de seis primers de microssatélites confeccionados para a espécie. O material tecido epidérmico de golfinhos-rotadores foi coletado no Arquipélago de Fernando de Noronha pelo método de raspagem da pele. A extração do DNA das amostras foi realizada com o uso da resina Chelex. Os primers de microssatélite foram avaliados em reação de PCR (Polymerase Chain Reaction) e validados na população natural. Dos seis primers avaliados quatro não apresentaram amplificação de produtos específicos (Slo5, Slo6, Slo7 e Slo12) e dois amplificaram bandas com tamanhos esperados (Slo8 e Slo10). O primer Slo10 foi monomórfico e o Slo8 apresentou-se polimórfico em gel de acrilamida. E, desta forma, os primers de microssatélites caracterizados neste trabalho contribuirão para a melhor compreensão da biologia da espécie, bem como no planejamento e monitoramento da população de Stenella longirostris

Threatened fishes of the world: Brycon nattereri Gunther, 1864 (Characidae)

Brycon nattereri (Ostariophysi: Characiformes: Characidae), a threatened South American freshwater fish, occurs in the Parana, Tocantins and Sao Francisco river basins in central Brazil. It is a middle-sized (up to 50 cm SL), omnivorous species, which occurs in swift, clear-water rivers with well-preserved riparian vegetation. Main threats to the species are water pollution, dam building, and deforestation.

Stock boundaries of Parapenaeus longirostris (Lucas, 1846) populations in the Italian seas: Development of genomic 2b-RAD markers and biological variation analysis.

This thesis is developed in the contest of Ritmare project WP1, which main objective is the development of a sustainable fishery through the identification of populations boundaries in commercially important species in Italian Seas. Three main objectives are discussed in order to help reach the main purpose of identification of stock boundaries in Parapenaeus longirostris: 1 -Development of a representative sampling design for Italian seas; 2 -Evaluation of 2b-RAD protocol; 3 -Investigation of populations through biological data analysis. First of all we defined and accomplished a sampling design which properly represents all Italian seas. Then we used information and data about nursery areas distribution, abundance of populations and importance of P. longirostris in local fishery, to develop an experimental design that prioritize the most important areas to maximize the results with actual project funds. We introduced for the first time the use of 2b-RAD on this species, a genotyping method based on sequencing the uniform fragments produced by type IIB restriction endonucleases. Thanks to this method we were able to move from genetics to the more complex genomics. In order to proceed with 2b-RAD we performed several tests to identify the best DNA extraction kit and protocol and finally we were able to extract 192 high quality DNA extracts ready to be processed. We tested 2b-RAD with five samples and after high-throughput sequencing of libraries we used the software “Stacks” to analyze the sequences. We obtained positive results identifying a great number of SNP markers among the five samples. To guarantee a multidisciplinary approach we used the biological data associated to the collected samples to investigate differences between geographical samples. Such approach assures continuity with other project, for instance STOCKMED, which utilize a combination of molecular and biological analysis as well.

Aloina longirostris n. sp.

von V. Torka

Josef Höpfl als Gunther, Rollenbild, Kniestück, in: Richard Wagner: Götterdämmerung

Signatur des Originals: S 36/F04539