Characterization and cloning of chemically-induced mutants in barley (Hordeum vulgare L.)

Induced mutagenesis has been exploited for crop improvement and for investigating gene function and regulation. To unravel molecular mechanisms of stress resilience, we applied state-of-the-art genomics-based gene cloning methods to barley mutant lines showing altered root and shoot architecture and disease lesion mimic phenotypes. With a novel method that we named complementation by sequencing, we cloned NEC3, the causal gene for an orange-spotted disease lesion mimic phenotype. NEC3 belongs to the CYP71P1 gene family and it is involved in serotonin biosynthesis. By comparative phylogenetic analysis we showed that CYP71P1 emerged early in angiosperm evolution but was lost in some lineages including Arabidopsis thaliana. By BSA-Seq, we cloned the gene whose mutation increased leaf width, and we showed that the gene corresponded to the previously cloned BROADLEAF1. By BSA coupled to WGS sequencing, we cloned EGT1 and EGT2, two genes that regulate root gravitropic set point angle. EGT1 encodes a Tubby-like F-box protein and EGT2 encodes a Sterile Alpha Motive protein; EGT2 is phylogenetically related to AtSAM5 in Arabidopsis and to WEEP in peach where it regulates branch angle. Both EGT1 and EGT2 are conserved in wheat. We hypothesized that both participate to an anti-gravitropic offset mechanism since their disruption causes mutant roots to grow along the gravity vector. By the MutMap+ method, we cloned the causal gene of a short and semi-rigid root mutant and found that it encodes for an endoglucanase and is the ortholog of OsGLU3 in rice whose mutant has the same phenotype, suggesting that the gene is conserved in barley and rice. The mutants and the corresponding genes which were cloned in this work are involved in the response to stress and can potentially contribute to crop adaptation.

Macroscopic root water uptake distribution using a matric flux potential approach

Hydrological models featuring root water uptake usually do not include compensation mechanisms such that reductions in uptake from dry layers are compensated by an increase in uptake from wetter layers. We developed a physically based root water uptake model with an implicit compensation mechanism. Based on an expression for the matric flux potential (M) as a function of the distance to the root, and assuming a depth-independent value of M at the root surface, uptake per layer is shown to be a function of layer bulk M, root surface M, and a weighting factor that depends on root length density and root radius. Actual transpiration can be calculated from the sum of layer uptake rates. The proposed reduction function (PRF) was built into the SWAP model, and predictions were compared to those made with the Feddes reduction function (FRF). Simulation results were tested against data from Canada (continuous spring wheat [(Triticum aestivum L.]) and Germany (spring wheat, winter barley [Hordeum vulgare L.], sugarbeet [Beta vulgaris L.], winter wheat rotation). For the Canadian data, the root mean square error of prediction (RMSEP) for water content in the upper soil layers was very similar for FRF and PRF; for the deeper layers, RMSEP was smaller for PRF. For the German data, RMSEP was lower for PRF in the upper layers and was similar for both models in the deeper layers. In conclusion, but dependent on the properties of the data sets available for testing,the incorporation of the new reduction function into SWAP was successful, providing new capabilities for simulating compensated root water uptake without increasing the number of input parameters or degrading model performance.

Characterization of new polymorphic functional markers for sugarcane

Fundacao de Amparo a Pesquisa do Estado de Sao Paulo (FAPESP)[02/01167-1]

Influência dos diferentes períodos de colheita na expressão de isoenzimas em sementes de cevada

O objetivo foi avaliar os padrões isoenzimáticos de Esterase (EST - EC 3.1.1.1), Fosfatase Ácida (ACP - EC 3.1.3.2), Malato Desidrogenase (MDH - EC 1.1.1.37), Álcool Deshidrogenase (ADH - EC 1.1.1.1) e Glutamato Oxalacetato Transaminase (GOT - EC 2.6.1.1), em sementes e plântulas de dois cultivares de cevada (MN 721 e Scarlett). As sementes foram fornecidas pela empresa Westermann, localizada no município de Piratini, Rio Grande do Sul, onde foi realizado o cultivo da cevada em 2007. Foram colhidas em três épocas com diferentes percentuais de umidade, secas a 13% de umidade e armazenadas em câmara fria. Os cinco sistemas isoenzimáticos analisados apresentaram variações na expressão, principalmente quando comparados entre sementes e plântulas. Concluiu-se que há variação no padrão de expressão das enzimas EST, ACP, MDH, ADH e GOT entre sementes e plântulas. A expressão das enzimas EST e GOT foi pouco e muito influenciada pela época de colheita, respectivamente.

Estudo paleoetnobotânico do povoado da Idade do Ferro do Crastoeiro (Noroeste de Portugal)

Dissertação de mestrado em Arqueologia

Fitohormonas como intermediarios entre señal ambiental y morfogénesis, y en la relación planta/microorganismo

Se estudia el rol de las hormonas como intermediarios en los procesos de dormición de yemas florales y crecimiento caulinar de especies arbóreas frutales ( Prunus spp., Pyrus malus normal y mutante enana) y herbáceas (lechuga, cebada, Arabidopsis ) por parte de factores ambientales y en el efecto benéfico de rizobacterias sobre el crecimiento de cereales. Abarca tres subproyectos: Subproyecto 1. Dormición en yemas florales de duraznero. Estudia el efecto de diferentes giberelinas en aplicaciones exógenas en laboratorio y a campo, sobre la fenología y morfología ( al microscopio) de yemas florales de duraznero. Se intenta establecer el papel de GAs como mediadores entre señal ambiental y los procesos de diferenciación de los verticilos florales. Objetivos: Estudiar el efecto de aplicaciones exógenas de GA3, GA5, dihidro-GA5 y dihidro-GA4 sobre la fenología y morfología de yemas florales de: i) plantas a campo y ii) estacas aisladas. Subproyecto 2. Fitohormonas como intermediarios entre calidad de luz y alargamiento caulinar en Prunus spp. Estudia cuali-cuantitativamente IAA, ABA y giberelinas de especies arbóreas frutales ( Prunus spp., Pyrus malus normal y mutante enana) y herbáceas (lechuga, cebada, Arabidopsis ) sometidas a diferentes calidades de luz (sistema fito y criptocromo). Las hormonas se analizan por HPLC, bioensayo y GC-SIMILAR. Intenta establecer la posible correlación entre señal ambiental, sistema fotorreceptor, metabolismo de hormonas y respuesta morfogénica. Objetivos: Determinar el efecto de luz azul (sistema criptocromo) y rojo/rojo lejano (sistema fitocromo) sobre los niveles de giberelinas, ABA y AIA en plantas de Prunus avium, Pyrus malus (normal y enano), Latuca sativa, Hordeum vulgare (normal y enano) y Arabidopsis thaliana . Subproyecto 3. Producción de GAs por Azospirillum spp. Estudia la producción de giberelinas y su metabolismo por Azospirillum spp. y sus efectos sobre crecimiento y desarrollo de cereales. La identificación y cuantificación de giberelinas se realiza como en el Subproyecto 2. Estudios de metabolismo incluyen alimentación con giberelinas deuteradas o sus conjugados. Semillas pre-germinadas de cereales se inoculan con distintas cepas y/o concentraciones de GA3, evaluándose diversos parámetros de crecimiento radical. Los resultados de laboratorio se probarán a campo. Objetivos: Estudiar la producción de GAs o factores que regulan su metabolismo (relación C/N, calidad de luz, pH y tiempo de incubación) por A. spp., en cultivo aislado y con la asociación diazotrofo/sistema radical de gramíneas y los efectos de la batería sobre el crecimiento de dichas especies.

An ATP-binding cassette subfamily G full transporter is essential for the retention of leaf water in both wild barley and rice.

Land plants have developed a cuticle preventing uncontrolled water loss. Here we report that an ATP-binding cassette (ABC) subfamily G (ABCG) full transporter is required for leaf water conservation in both wild barley and rice. A spontaneous mutation, eibi1.b, in wild barley has a low capacity to retain leaf water, a phenotype associated with reduced cutin deposition and a thin cuticle. Map-based cloning revealed that Eibi1 encodes an HvABCG31 full transporter. The gene was highly expressed in the elongation zone of a growing leaf (the site of cutin synthesis), and its gene product also was localized in developing, but not in mature tissue. A de novo wild barley mutant named "eibi1.c," along with two transposon insertion lines of rice mutated in the ortholog of HvABCG31 also were unable to restrict water loss from detached leaves. HvABCG31 is hypothesized to function as a transporter involved in cutin formation. Homologs of HvABCG31 were found in green algae, moss, and lycopods, indicating that this full transporter is highly conserved in the evolution of land plants.

Oxygen-sensing reporter strain of Pseudomonas fluorescens for monitoring the distribution of low-oxygen habitats in soil.

The root-colonizing bacterium Pseudomonas fluorescens CHA0 was used to construct an oxygen-responsive biosensor. An anaerobically inducible promoter of Pseudomonas aeruginosa, which depends on the FNR (fumarate and nitrate reductase regulation)-like transcriptional regulator ANR (anaerobic regulation of arginine deiminase and nitrate reductase pathways), was fused to the structural lacZ gene of Escherichia coli. By inserting the reporter fusion into the chromosomal attTn7 site of P. fluorescens CHA0 by using a mini-Tn7 transposon, the reporter strain, CHA900, was obtained. Grown in glutamate-yeast extract medium in an oxystat at defined oxygen levels, the biosensor CHA900 responded to a decrease in oxygen concentration from 210 x 10(2) Pa to 2 x 10(2) Pa of O(2) by a nearly 100-fold increase in beta-galactosidase activity. Half-maximal induction of the reporter occurred at about 5 x 10(2) Pa. This dose response closely resembles that found for E. coli promoters which are activated by the FNR protein. In a carbon-free buffer or in bulk soil, the biosensor CHA900 still responded to a decrease in oxygen concentration, although here induction was about 10 times lower and the low oxygen response was gradually lost within 3 days. Introduced into a barley-soil microcosm, the biosensor could report decreasing oxygen concentrations in the rhizosphere for a 6-day period. When the water content in the microcosm was raised from 60% to 85% of field capacity, expression of the reporter gene was elevated about twofold above a basal level after 2 days of incubation, suggesting that a water content of 85% caused mild anoxia. Increased compaction of the soil was shown to have a faster and more dramatic effect on the expression of the oxygen reporter than soil water content alone, indicating that factors other than the water-filled pore space influenced the oxygen status of the soil. These experiments illustrate the utility of the biosensor for detecting low oxygen concentrations in the rhizosphere and other soil habitats.

Evaluación de efectos de varios tipos de biochar en suelo y planta

El objetivo de este proyecto ha sido analizar los posibles efectos del biochar obtenido de restos de biomasa de resinosas, de caducifolios y de un lodo de depuradora por tres procedimientos de pirolisis (lenta, rápida y gasificación), sobre un suelo (Haploxerept típico) y una planta de interés agrícola (Hordeum vulgare). Adicionalmente, se han comparado los efectos del biochar con los producidos por la aplicación de los materiales originales, y la interacción del biochar sobre el fertilizante mineral incorporado al suelo. Por último, se ha completado el trabajo con la observación de la influencia del biochar en la formación de micorrizas. Para llevar a cabo este estudio se ha realizado un ensayo en invernadero y diferentes análisis en laboratorio que han permitido el estudio comparativo de la germinación y crecimiento de la cebada, y de diferentes parámetros fisicoquímicos del suelo que podrían explicar la respuesta de las plantas crecidas sobre los distintos tipos de biochar. A partir de la interpretación de los resultados se ha determinado que los diferentes tipos de biochar han provocado un mayor desarrollo de la cebada en comparación con la aplicación de sus respectivas materias primas, o bien se ha observado la desaparición de efectos inhibidores como en el caso de los lodos de depuradora. Por otro lado, ha destacado el biochar obtenido por pirólisis lenta del resto de los biochars puesto que se ha observado menor mineralización de su materia orgánica de los suelos y mayor eficiencia en el desarrollo de las plantas. Por último, el efecto de la enmienda orgánica en forma de biochar sobre el desarrollo de las plantas ha sido menor que el efecto provocado directamente por la fertilización mineral.

Grain yield, net blotch and scald of barley in Finnish official variety trials

Selostus: Ohrasato ja verkko- ja rengaslaikku virallisissa lajikekokeissa

Optimizing anther culture for barley breeding

Selostus: Ponsiviljelymenetelmän optimointi ohranjalostuksen käyttöön

Soil fertility, nutrition and yield of maize and barley with gypsum application on soil surface in no-till

Annual crop yield and nutrition have shown differentiated responses to modifications in soil chemical properties brought about by gypsum application. The aim of this study was to evaluate the effect of gypsum application rates on the chemical properties of a Latossolo Bruno (Clayey Oxisol), as well as on the nutrition and yield of a maize-barley succession under no-till. The experiment was set up in November 2009 in Guarapuava, Parana, Brazil, applying gypsum rates of 0.0, 1.5, 3.0, 4.5, and 6.0 Mg ha-1 to the soil surface upon sowing maize, with crop succession of barley. Gypsum application decreased the levels of Al3+ and Mg2+ in the 0.0-0.1 m layer and increased soil pH in the layers from 0.2-0.6 m depth. Gypsum application has increased the levels of Ca2+ in all soil layers up to 0.6 m, and the levels of S-SO4(2-) up to 0.8 m. In both crops, the leaf concentrations of Ca and S were increased while Mg concentrations have decreased as a function of gypsum rates. There was also an effect of gypsum rates on grain yield, with a quadratic response of maize and a linear increase for barley. Yield increases were up to 11 and 12 % in relation to control for the maximum technical efficiency (MTE) rates of 3.8 and 6.0 Mg ha-1 of gypsum, respectively. Gypsum application improved soil fertility in the profile, especially in the subsurface, as well as plant nutrition, increasing the yields of maize and barley.

Responses of soil respiration and barley growth to modified supply of oxygen in the soil

Selostus: Maan hengityksen ja ohran kasvun reagointi hapensaannin muutoksiin maassa

Hordein polypeptide patterns in relation to malting quality in Brazilian barley varieties

Since there is evidence that malting quality is related to the storage protein (hordein) fraction, in the present work the hordein polypeptide patterns from 13 barley (Hordeum vulgare L.) varieties of different malting quality were analysed in order to explore the feasibility of using hordein electrophoresis to assist in the selection of malting barleys. The formation of clusters separating the varieties with higher malting quality from the others with lower quality suggests that there is a relationship between the general hordein polypeptide pattern and malting quality in the varieties analysed. By the Sperman's correlation test three hordein bands correlated negatively with malting quality in the germplasm studied.