Bioeconomic Evaluation of Semi-intensive Shrimp Farming in Kerala

Penaeid shrimps are, perhaps, the most important fishery resource of the coastal waters of our country. Their exceptionally tasty. protein-rich flesh tops any seafood in foreign exchange earnings. No wonder, the demand of shrimp, the "Pinkish Gold of the Sea" (MPEDA. 1992). is increasing in the world market. The study of the growth of an organism is important in understanding the conditions under which optimum growth occurs. It is also important in getting an insight into the various factors that influence growth. Studies on the growth pattern of commercially important species of shrimp and of the factors that influence their growth rate are essential for the successful cultivation of shrimps.

Species diversity and community structure of ichthyofauna in the seagrass ecosystem of Minicoy Atoll, Lakshadweep, India

Present study consists the species diversity, abundance and community structure of ichthyofauna in the seagrass meadow of Minicoy Atoll, Lakshadweep Islands. Two hundred and three species of fishes were recorded during the study, from four stations in the Atoll. They belonged to 2 classes, 11orders, 43 families and 93 genera. Six species belonged to the class Chondreichthyes and 197 species to Osteichthyes. Family Pomacentridae showed maximum abundance of species (22%). Station I, having close proximity to the coral reefs, observed the maximum number of families (37) and species (129) and that with minimum number was in station II (23 families and 52 species). Bray-Curtis similarity plot showed a similarity range of 22 to 52%, seasonally. Station I showed highest Shannon-Wiener diversity index (H’log2) (4.22) during August and the lowest (2.91) during June. Stations I and III showed comparatively higher abundance and diversity of fishes. Variability in seagrass habitat structure and the interaction with coral reefs influenced the species composition and diversity of fishes in Minicoy Atoll. The findings of the present investigation can be used as baseline information for the fishery resource management of the region

Biologia do caranguejo-uçá, Ucides cordatus (Crustacea: Decapoda: Brachyura), na Baía da Babitonga, Santa Catarina, Brasil

O objetivo deste estudo é caracterizar pela primeira vez alguns aspectos da reprodução do caranguejo-uçá em manguezais da Baía da Babitonga (Santa Catarina). Além disso, a densidade e o tamanho do estoque deste recurso pesqueiro foram também estimados. Os exemplares foram coletados mensalmente, de maio de 2002 a abril de 2003, em duas áreas distintas: Iperoba e Palmital; um total de 2265 espécimes (1623 machos e 642 fêmeas) foi analisado. Os machos com gônadas maturas foram registrados durante todo o ano, enquanto as fêmeas com gônadas maturas ocorreram em apenas cinco meses. As fêmeas ovígeras foram registradas apenas em dezembro e janeiro. O etograma do fenômeno de migração reprodutiva (andada) esteve em concordância com a maior atividade de caranguejos associada às luas cheias e novas, com maior intensidade em dezembro e janeiro, relacionados ao verão austral. A densidade total no Manguezal de Iperoba foi de 2,05 ± 0,97 ind./m², não diferindo significativamente daquela registrada para o Manguezal do Palmital (2,06 ± 1,08 ind./m²) (p < 0,05). A média global para a estimativa de densidade na Baia da Babitonga foi de 2,05 ± 1,00 ind./m², correspondendo a 1,42 ± 0,89 ind./m² com base nas galerias abertas e 0,64 ± 0,63 ind./m² para as galerias fechadas.

Structural and ultrastructural characteristics of the yolk syncytial layer in Prochilodus lineatus (Valenciennes, 1836) (Teleostei; Prochilodontidae)

The yolk syncytial layer (YSL) has been regarded as one of the main obstacles for a successful cryopreservation of fish embryos. The purpose of this study was to identify and characterize the YSL in Prochilodus lineatus, a fish species found in southeastern Brazil and considered a very important fishery resource. Embryos were obtained through artificial breeding by hormonal induction. After fertilization, the eggs were incubated in vertical incubators with a controlled temperature (28 degrees C). Embryos were collected in several periods of development up to hatching and then fixed with 2% glutaralclehyde and 4% paraformaldehyde in 0.1 M sodium phosphate buffer (pH 7.3). Morphological analyses were carried out under either light, transmission or scanning electron microscopy. The formation of the YSL in P. lineatus embryos starts at the end of the cleavage stage (morula), mainly at the margin of the blastoderm, and develops along the embryo finally covering the entire yolk mass (late gastrula) and producing a distinct intermediate zone between the yolk and the endodermal cells. The YSL was characterized by the presence of microvilli on the contact region with the yolk endoderm. A cytoplasmic mass, full of mitochondria, vacuoles, ribosomes, endomembrane nets and euchromatic nuclei, indicated a high metabolic activity. This layer is shown as an interface between the yolk and the embryo cells that, besides sustaining and separating the yolk, acts as a structure that makes it available for the embryo. The structural analyses identified no possible barriers to cryoprotectant penetration.

Isolation and characterization of eight microsatellite loci in Leporinus macrocephalus (Characiformes : Anostomidae) and cross-species amplification

Leporinus macrocephalus is a species endemic to the Paraguay River basin and an important fishery resource, as well as a valuable species in aquaculture programs. A total of eight polymorphic microsatellite loci were isolated and characterized. A population survey was conducted involving 45 specimens whereby a large number of alleles (range 5-17 among loci), a highly observed (0.1667-0.6129) and an expected (0.6967-0.9448) heterozygosity was detected, indicating its usefulness in population genetics studies. Cross-species amplification was successful in eight Characiformes species.

The reproductive cycle of Callinectes danae Smith, 1869 (Decapoda, Portunidae) in the Ubatuba Region, Brazil

Callinectes danae Smith, 1869, known as siri-azul, is an important fishery resource along the Brazilian coast. The reproductive cycle of this species was studied based on their moult cycle and the development of their gonads. The animals were collected with an otter-trawl in the Ubatuba region (23 degrees 26'S 45 degrees 02'W) every other month from July 1991 to May 1993. A total of 1826 specimens were captured: 788 males and 1038 females. Ovigerous females and specimens with developed gonads in both sexes were found in all months sampled. In females, moult activity was recorded in all size classes while in males, it was verified from 20-27 mm to 90-97 mm size classes. The females produced more than one clutch during a single reproductive season, a fact evidenced by the presence of ovigerous females with ovaries in all the development phases. The species C. danae reproduces continuously, like most brachyurans from tropical waters.

Size at morphological maturity of Ucides cordatus (Linnaeus, 1763) (Brachyura, Ocypodidae) in the Laranjeiras Bay, Southern Brazil

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Mitochondrial DNA variation in wild populations of Leporinus elongatus from the Paraná River basin

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Meat yield of Callinectes bocourti A. Milne Edwards, 1879 (Crustacea, Portunidae) in Iguape, São Paulo, Brazil

The objective of the present study was to analyze the meat yield for both sexes of the crab Callinectes bocourti in the region of Iguape, Brazil. The carapace width for males was 78.1-114.0 mm (96.7 ± 9.5 mm) and for females 76.0-106.3 mm (93.0 ± 7.8 mm). In males, the total wet weight ranged from 65.53 to 224.36 g (134.04 ± 40.77 g) and for females from 56.66 to 164.74 g (105.93 ± 26.88 g). A comparison of morphological structures revealed that the greatest meat yield was in the carapace (55.1%), followed by the right chela (16.9%), the left chela (15.9%), and the legs (12.1%). The total yield from the males (28.5%) was slightly higher than that from the females (22.1%). In general, portunids yield more meat than other crab species. The results of this study will allow the optimization of meat production for this crab species. Manual meat removal makes the process more expensive. This activity could offer an alternative to the fishing communities that live exclusively from this fishery resource. © 2007 Escuela de Ciencias del Mar Pontificia Universidad Católica de Valparaíso.

Variação diária e caracterização morfológica das larvas de peixes do complexo estuarino do Rio Amazonas - PA

A grande importância dos recursos pesqueiros para a Amazônia, aliada à necessidade de ampliar os conhecimentos básicos sobre identificação das larvas de peixes (coletadas em ambiente natural), justifica o desenvolvimento deste trabalho, que tem como objetivo expandir as informações sobre o ictioplâncton, relacionando as com as tendências de variação diária e entre marés, do complexo estuarino do rio Amazonas – PA. As coletas foram realizadas durante o período diurno e noturno, no segundo semestre de 2007, pelo Projeto PIATAM mar II, sob ponto fixo na subárea 1 (estuário do rio Paracauari) e na subárea 2 (baía do Guajará) nas marés de sizígia e quadratura, em arrastos horizontais na sub-superfície da coluna d‟água com rede de plâncton cônico-cilíndrica e malha de 300μm. As amostras foram acondicionadas em recipientes contendo formalina a 4%. Os fatores hidrológicos foram obtidos in situ pelo Grupo de Oceanografia Química do Museu Paraense Emilio Goeldi. As amostras foram triadas e identificadas por meio de características morfológicas, morfométricas e merísticas, baseando-se na técnica de sequência regressiva de desenvolvimento e em bibliografias especializadas. As principais estruturas e características das fases iniciais dos peixes foram descritas e ilustradas, facilitando assim futuros estudos ictioplanctônicos para região. A temperatura superficial da água, potencial hidrogeniônico e oxigênio dissolvido não apresentaram diferenças significativas nas áreas estudadas. Os valores de salinidade não apresentaram diferença significativa entre as estações de coleta e marés, registrando apenas variação horizontal com aumento gradativo em direção à foz com valores máximos (12) e mínimos (0) para as subárea 1 e subárea 2, respectivamente. As maiores densidades de ovos foram registradas na subárea 1, em relação à subárea 2, com as maiores densidades para o período diurno (163,29 ovos/100m³) na subárea 1 e noturno (19,70 ovos/100m³) na subárea 2. As larvas foram distribuídas em 22 taxa representados por 13 famílias e 21 espécies, sendo os taxa dominantes: P. flavipinnis (46,29%), R. amazonica (19,75%), Engraulidae (10,70%), P. squamosissimus (7,55%), A. lineatus (5,19%), O. saurus (3,30%) e Gobiosoma sp. (2,15%), com elevada participação relativa dos Clupeiformes (76,75%). Quanto aos estágios de desenvolvimento, foi observada maior abundância de larvas em pré-flexão nas subáreas 1 e 2, sendo o estágio larval vitelino e pós-flexão os menos representativos. O período noturno apresentou as maiores densidade de larvas e número de taxa, evidenciando uma possível migração nictemeral do ictioplâncton. Apenas M. furnieri apresentou abundância significativamente maior nas amostras diurnas. A grande maioria dos taxa não apresentaram diferenças significativas entre as abundâncias diurnas e noturnas. Logo, a densidade de larvas e o número de taxa diferem entre o período diurno e noturno e entre maré. Portanto, as características morfológicas descritas no presente trabalho permitem uma adequada identificação das larvas, ampliando o conhecimento biológico das espécies estuarinas do litoral paraense, uma vez que as informações sobre larvas de peixes ainda são escassas, fazendo-se necessária uma intensificação nas pesquisas. Além disso, a compreensão da ecologia dos organismos, sobre tudo daqueles que apresentam seu ciclo de vida associado aos estuários, e as variações no transporte das larvas entre os períodos do dia e da noite e entre as marés são questões fundamentais para aprimorar o manejo e a conservação destes recursos renováveis.

Reproduction and recruitment of the seabob shrimp: a threatened exploitation species in southeastern of Brazil

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Meat yield of the mangrove crab, Ucides cordatus (Linnaeus, 1763) (Crustacea, Brachyura, Ucididae)

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Wide-scale population genomics of Atlantic bluefin tuna (Thunnus thynnus) inferred by novel high-throughput technology

My PhD project was focused on Atlantic bluefin tuna, Thunnus thynnus, a fishery resource overexploited in the last decades. For a better management of stocks, it was necessary to improve scientific knowledge of this species and to develop novel tools to avoid collapse of this important commercial resource. To do this, we used new high throughput sequencing technologies, as Next Generation Sequencing (NGS), and markers linked to expressed genes, as SNPs (Single Nucleotide Polymorphisms). In this work we applied a combined approach: transcriptomic resources were used to build cDNA libreries from mRNA isolated by muscle, and genomic resources allowed to create a reference backbone for this species lacking of reference genome. All cDNA reads, obtained from mRNA, were mapped against this genome and, employing several bioinformatics tools and different restricted parameters, we achieved a set of contigs to detect SNPs. Once a final panel of 384 SNPs was developed, following the selection criteria, it was genotyped in 960 individuals of Atlantic bluefin tuna, including all size/age classes, from larvae to adults, collected from the entire range of the species. The analysis of obtained data was aimed to evaluate the genetic diversity and the population structure of Thunnus thynnus. We detect a low but significant signal of genetic differentiation among spawning samples, that can suggest the presence of three genetically separate reproduction areas. The adult samples resulted instead genetically undifferentiated between them and from the spawning populations, indicating a presence of panmictic population of adult bluefin tuna in the Mediterranean Sea, without different meta populations.

Abundance of zooplankton based on a long-term study at the Galata transect and covers the spring-summer periods from 1967 till 2005

The dataset is based on a long-term study (38 years) at the Galata transect and covers the spring-summer periods from 1967 till 2005. The whole dataset is composed of 360 data of total zooplankton biomass and abundance . Samples were collected in discrete layers 0-10m, 10-20m, 10-25m, 25-50m, 50-70m, 50-100m, 100-150. Mesozooplankton abundance: the collected material was analysed using the method of Domov (1959). Samples were brought to volume of 25-30 ml depending upon zooplankton density and mixed intensively until all organisms were distributed randomly in the sample volume. After that 5 ml of sample was taken and poured in the counting chamber for taxomomic identification and count. Large (> 1 mm body length) and not abundant species were calculated in whole sample. Counting and measuring of organisms were made in the Dimov chamber under the stereomicroscope to the lowest taxon possible. Taxonomic identification was done at the Institute of Fishery Resource by Prof. Asen Konsulov and Institute of Oceanology by Prof. Asen Konsulov, Lyudmila Kamburska and Kremena Stefanova using the relevant taxonomic literature (Mordukhay-Boltovskoy, F.D. (Ed.). 1968, 1969,1972). Taxon-specific mesozooplankton abundance: The collected material was analysed using the method of Domov (1959). Samples were brought to volume of 25-30 ml depending upon zooplankton density and mixed intensively until all organisms were distributed randomly in the sample volume. After that 5 ml of sample was taken and poured in the counting chamber for taxomomic identification and count. Copepods and Cladoceras were identified and enumerated; the other mesozooplankters were identified and enumerated at higher taxonomic level (commonly named as mesozooplankton groups). Large (> 1 mm body length) and not abundant species were calculated in whole sample. Counting and measuring of organisms were made in the Dimov chamber under the stereomicroscope to the lowest taxon possible. Taxonomic identification was done at the Institute of Fishery Resource by prof. Asen Konsulov and Institute of Oceanology by Prof. Asen Konsulov, Lyudmila Kamburska and Kremena Stefanova using the relevant taxonomic literature (Mordukhay-Boltovskoy, F.D. (Ed.). 1968, 1969,1972).

Seawater carbonate chemistry and hatch rates of Antarctic krill

Marine ecosystems of the Southern Ocean are particularly vulnerable to ocean acidification. Antarctic krill (Euphausia superba; hereafter krill) is the key pelagic species of the region and its largest fishery resource. There is therefore concern about the combined effects of climate change, ocean acidification and an expanding fishery on krill and ultimately, their dependent predators-whales, seals and penguins. However, little is known about the sensitivity of krill to ocean acidification. Juvenile and adult krill are already exposed to variable seawater carbonate chemistry because they occupy a range of habitats and migrate both vertically and horizontally on a daily and seasonal basis. Moreover, krill eggs sink from the surface to hatch at 700-1,000 m, where the carbon dioxide partial pressure (pCO2) in sea water is already greater than it is in the atmosphere. Krill eggs sink passively and so cannot avoid these conditions. Here we describe the sensitivity of krill egg hatch rates to increased CO2, and present a circumpolar risk map of krill hatching success under projected pCO2 levels. We find that important krill habitats of the Weddell Sea and the Haakon VII Sea to the east are likely to become high-risk areas for krill recruitment within a century. Furthermore, unless CO2 emissions are mitigated, the Southern Ocean krill population could collapse by 2300 with dire consequences for the entire ecosystem.