Retrieval of phytoplankton size from bio-optical measurements: theory and applications

The absorption coefficient of a substance distributed as discrete particles in suspension is less than that of the same material dissolved uniformly in a medium—a phenomenon commonly referred to as the flattening effect. The decrease in the absorption coefficient owing to flattening effect depends on the concentration of the absorbing pigment inside the particle, the specific absorption coefficient of the pigment within the particle, and on the diameter of the particle, if the particles are assumed to be spherical. For phytoplankton cells in the ocean, with diameters ranging from less than 1 µm to more than 100 µm, the flattening effect is variable, and sometimes pronounced, as has been well documented in the literature. Here, we demonstrate how the in vivo absorption coefficient of phytoplankton cells per unit concentration of its major pigment, chlorophyll a, can be used to determine the average cell size of the phytoplankton population. Sensitivity analyses are carried out to evaluate the errors in the estimated diameter owing to potential errors in the model assumptions. Cell sizes computed for field samples using the model are compared qualitatively with indirect estimates of size classes derived from high performance liquid chromatography data. Also, the results are compared quantitatively against measurements of cell size in laboratory cultures. The method developed is easy-to-apply as an operational tool for in situ observations, and has the potential for application to remote sensing of ocean colour data.

Taxonomia de Papilionoideae (leguminosae) da Mata Atlântica do Rio Grande do Norte, Brasil

Leguminosae is the third largest family of angiosperms with about 19.325 species and 727 genera, and it is pantropically distributed. Papilionoideae is the most diverse of the three legume subfamilies, with around 13.800 species (71%), 478 genera, and 28 tribes. Papilionoid legumes include herbs, shrubs, lianas or trees with pinnate, trifoliolate, unifoliolate or simple leaves, flowers frequently papilionate with descending imbricate petal aestivation, the petals highly differentiated into standard, keel, and wings, androecium usually diplostemous, and seeds without pleurogram, with conspicuous hilum, and the embryo radicle usually curved. The current study aims to carry out a taxonomic account of the Papilionoideae from Atlantic Forest remnants in Rio Grande do Norte, Brazil, across the herbaria data surveys, collections of field samples and morphological analysis of the collected specimens and/or herbaria materials. Identification key, descriptions, diagnostic characters, illustrations, and geographic distribution of the 68 species and 32 genera within the following tribes Phaseoleae (11 genera/24 species), Dalbergieae (9/20), Swartzieae (3/3), Millettieae (2/4), Sophoreae (2/2), Abreae (1/1), Crotalarieae (1/3), Desmodieae (1/7), Indigofereae (1/3), and Sesbanieae (1/1). The most species-rich genera were Desmodium Desv. (7 species), Centrosema (DC.) Benth. (5), Stylosanthes Sw. (5), Aeschynomene L. (4) and Macroptilium (Benth.) Urb. (4). Concerning to the habit, the herbaceous and shrubby has predominated with 60% (41 spp.), following by the vine and lianas with 28% (19 spp.) and the woody with only 12% (8 spp.). Thirty two species and the following genera are newly recorded for the flora of Rio Grande do Norte: Chaetocalyx, Cochliasanthus, Crotalaria, Galactia, Geoffroea, Macroptilium, Rhynchosia, Swartzia, Trischidium, and Vigna

Identification of Eimeria mitis and Eimeria praecox in broiler feces using polymerase chain reaction

There are few reports concerning the epidemiology of Eimeria praecox and Eimeria mitis in Brazil. In the present experiment, the polymerase chain reaction (PCR) was used to identify these species in 156 samples of broiler chicken feces from several Brazilian states and the Federal District. Oocysts present in feces samples were purified by sodium chloride flotation followed by addition of DNAzol reagent (Invitrogen®) for extraction of genomic DNA. DNA was precipitated and stored following DNAzol reagent manufacture's instructions. The primers and PCR conditions were as described by Schnitzler et al. (1999). In the 156 field samples analyzed by PCR, 70 and 45 were positive for E. praecox and E. mitis, respectively. In this study we have shown that DNA extraction using DNAzol followed by PCR can be a useful tool in epidemiological studies, since it provides fast and reliable detection of Eimeria sp. in field samples.

Diversidade da ictiofauna do Alto Rio Paraná: composição atual e perspectivas futuras

É apresentada uma síntese sobre os peixes do Alto Paraná, com base em dados de coleções, dados de literatura e novas coletas. Trezentas e dez espécies, de 11 ordens e 38 famílias, são referidas para a drenagem, aumentando significativamente números anteriores. Dentre as espécies da área, 236 (76,1%) são autóctones, 67 (21,6%) alóctones e sete (2,3%) exóticas. As principais causas de ocorrência de espécies não nativas (alóctones e exóticas) foram a dispersão a partir do baixo Paraná, após a construção do Reservatório de Itaipu e o escape de pisciculturas. A maior parte das espécies referidas (65%) tem porte pequeno, sendo menor que 21 cm de comprimento; dentre essas, a maioria ocorre apenas em riachos e cabeceiras. Apesar da ictiofauna do Alto Paraná ser uma das melhor conhecidas e mais estudadas, o número de espécies descritas ou referidas para a área tem crescido exponencialmente, o que indica que a riqueza apresentada está longe de representar a realidade. de fato, várias novas espécies têm sido descritas nos últimos anos e cerca de 50 novas espécies, já reconhecidas, estão em fase de descrição. A melhoria no conhecimento sobre a ictiofauna do Alto Paraná é proporcional ao número de pesquisadores envolvidos em estudos na bacia e reflete, de modo inequívoco, iniciativas recentes que têm estimulado e incrementado pesquisas taxonômicas, facilitado o acesso ao material depositado em coleções científicas e aumentado as coletas em áreas e ambientes pouco amostrados. Entretanto, mantido o ritmo de descrições de novas espécies ocorrido até agora nessa última década, as 50 novas espécies já reconhecidas estariam descritas apenas dentro de dez anos, um tempo demasiadamente longo. Por essa razão é muito importante que a comunidade científica e os órgãos de fomento encontrem e viabilizem iniciativas de modo a aumentar esse ritmo de descrições de novos táxons e disponibilizar esses novos nomes mais rapidamente.

Marigold (Tagetes erecta L.) as an attractive crop to natural enemies in onion fields

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Tests to determine LC50 and discriminating doses for macrocyclic lactones against the cattle tick, Boophilus microplus

Laboratory tests were carried out on larvae and adults of the cattle tick Boophilus microplus to determine the toxicity of macrocyclic lactone acaricides (MLs). Technical and commercial MLs were used in larval packet test (LPT), larval immersion test (LIT) and adult immersion test (AIT). Tn LIT and AIT the toxicity of MLs was much higher than for LPT. In the AIT, diluting the injectable formulation of MLs in water was as effective as dilution in ethanol + Triton X-100. LC50, LC99.9 and 95% confidence limits were determined so that a discriminating dose (DD) could be set for larval and adult tests in order to diagnose potential resistance to MLs in field samples of the tick. These DDs are for Australian strains of B. microplus and may not be suitable for other strains until further work is carried out.The value of these diagnostic tests can only be verified if or when resistance to MLs emerges in ticks. (C) 2001 Elsevier B.V. B.V. All rights reserved.

Validation of an immunohistochemistry assay to detect turkey coronavirus: A rapid and simple screening tool for limited resource settings

The objective of the present study was to develop and apply the direct immunohistochemistry (D-IHC) assay to search for turkey coronavirus (TCoV) antigens in formalin-fixed embedded-paraffin tissues by the use of biotin-labeled polyclonal antibody. Twenty-eight-day-old embryonated turkey eggs (n = 50) were inoculated with TCoV-purified virus, and 3 d after inoculation, sections from ileum, ileum-cecal junction, and ceca were harvested, fixed in neutral formalin, and embedded in paraffin blocks and used as positive control. In addition, a total of 100 field samples from ileum, ileum-cecal junction, and ceca, collected from 30 to 45-d-old turkeys poults experiencing an outbreak of acute enteritis, were used to search for TCoV by the same D-IHC. All results were compared with those obtained by conventional RT-PCR and indirect fluorescent antibody assay (IFA) for all tested samples. Turkey coronavirus was detected in experimentally infected embryo tissues and also in field samples in 100% of ileum-cecal junction and ceca by the 3 detection procedures. With IFA as a reference assay, sensitivity and specificity of D-IHC were 98 and 58%, whereas sensitivity and specificity of reverse transcription-PCR were 96 and 66%, calculated from the total of tested samples from experimental infection. Each of the examined procedures was highly specific (D-IHC, 93%; RT-PCR, 90%), sensitive (D-IHC, 85%; RT-PCR, 86%), and agreement of both D-IHC and RT-PCR was 99 and 100%, respectively, compared with IFA results obtained from all the field samples. These findings demonstrated the utility of D-IHC for direct detection of TCoV from field samples and considering the sensitivity and specificity found here, can be used as an alternative technique.

Utilização de índices de vegetação para estimativa da proteção do solo pela cobertura vegetal: uma contribuição para o uso da equação universal das perdas de solo

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Efeito da imersão de mudas com fertilizante e cupinicida no crescimento de dois clones de eucalipto sob duas condições de umidade no substrato

Pós-graduação em Ciência Florestal - FCA

Resíduos da exploração florestal de Eucalyptus grandis Hill Ex Maiden para geração de energia elétrica

Pós-graduação em Agronomia (Energia na Agricultura) - FCA

Desenvolvimento e aplicação do ELISA indireto com proteína recombinante de nucleocapsídeo de coronavírus felino (FCoV) para quantificação de anticorpos em soros de gatos naturalmente infectados

Pós-graduação em Medicina Veterinária - FMVZ

A Method to Estimate the Population Level of Aceria litchii (Prostigmata: Eriophyidae) and a Study of the Population Dynamics of This Species and Its Predators on Litchi Trees in Southern Brazil

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Estanho em amostras ambientais por espectrometria de fluorescência atômica (AFS)

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Whole genome sequencing analysis of Plasmodium vivax using whole genome capture

Background: Malaria caused by Plasmodium vivax is an experimentally neglected severe disease with a substantial burden on human health. Because of technical limitations, little is known about the biology of this important human pathogen. Whole genome analysis methods on patient-derived material are thus likely to have a substantial impact on our understanding of P. vivax pathogenesis and epidemiology. For example, it will allow study of the evolution and population biology of the parasite, allow parasite transmission patterns to be characterized, and may facilitate the identification of new drug resistance genes. Because parasitemias are typically low and the parasite cannot be readily cultured, on-site leukocyte depletion of blood samples is typically needed to remove human DNA that may be 1000X more abundant than parasite DNA. These features have precluded the analysis of archived blood samples and require the presence of laboratories in close proximity to the collection of field samples for optimal pre-cryopreservation sample preparation. Results: Here we show that in-solution hybridization capture can be used to extract P. vivax DNA from human contaminating DNA in the laboratory without the need for on-site leukocyte filtration. Using a whole genome capture method, we were able to enrich P. vivax DNA from bulk genomic DNA from less than 0.5% to a median of 55% (range 20%-80%). This level of enrichment allows for efficient analysis of the samples by whole genome sequencing and does not introduce any gross biases into the data. With this method, we obtained greater than 5X coverage across 93% of the P. vivax genome for four P. vivax strains from Iquitos, Peru, which is similar to our results using leukocyte filtration (greater than 5X coverage across 96% of the genome). Conclusion: The whole genome capture technique will enable more efficient whole genome analysis of P. vivax from a larger geographic region and from valuable archived sample collections.

Remote Sensing of the El Hierro submarine volcanic eruption plume

[EN] Between October 2011 and March 2012 submarine volcanic eruptions took place at El Hierro (Canary Islands). The event produced plumes of discolored waters due to the discharge of volcanic matter, gases and fluids. Field samples of Chl-a and sulphur reduced species were collected by some oceanographic cruises (Instituto Español de Oceanografía, IEO).