Strengthening research library resources program.

Description based on: FY/80.

Further infrared systems studies for the Earth Resources Program,

Photocopy.

Strengthening research library resources program : abstracts of funded projects, 1990 /

"In the Education Amendments of 1976, Congress authorized the Higher Education Act, Title II-C (HEA Title II-C), Strengthening Research Library Resources Program..."--p.iii.

Development of molecular approaches to assess the diversity and abundance of marine nematodes assemblages for assessment of Good Environmental Status of the estuarine and marine ecosystems

In Europe, the concerns with the status of marine ecosystems have increased, and the Marine Directive has as main goal the achievement of Good Environmental Status (GES) of EU marine waters by 2020. Molecular tools are seen as promising and emerging approaches to improve ecosystem monitoring, and have led ecology into a new era, representing perhaps the most source of innovation in marine monitoring techniques. Benthic nematodes are considered ideal organisms to be used as biological indicator of natural and anthropogenic disturbances in aquatic ecosystems underpinning monitoring programmes on the ecological quality of marine ecosystems, very useful to assess the GES of the marine environment. dT-RFLP (directed Terminal-Restriction Fragment Length Polymorphism) allows to assess the diversity of nematode communities, but also allows studying the functioning of the ecosystem, and combined with relative real-time PCR (qPCR), provides a high-throughput semi-quantitative characterization of nematode communities. These characteristics make the two molecular tools good descriptors for the good environmental status assessment. The main aim of this study is to develop and optimize the dT-RFLP and qPCR in Mira estuary (SW coast, Portugal). A molecular phylogenetic analysis of marine and estuarine nematodes is being performed combining morphological and molecular analysis to evaluate the diversity of free-living marine nematodes in Mira estuary. After morphological identification, barcoding of 18S rDNA and COI genes are being determined for each nematode species morphologically identified. So far we generated 40 new sequences belonging to 32 different genus and 17 families, and the study has shown a good degree of concordance between traditional morphology-based identification and DNA sequences. These results will improve the assessment of marine nematode diversity and contribute to a more robust nematode taxonomy. The DNA sequences are being used to develop the dT-RFLP with the ability to easily process large sample numbers (hundreds and thousands), rather than typical of classical taxonomic or low throughput molecular analyses. A preliminary study showed that the digest enzymes used in dT-RFLP for terrestrial assemblages separated poorly the marine nematodes at taxonomic level for functional group analysis. A new digest combination was designed using the software tool DRAT (Directed Terminal Restriction Analysis Tool) to distinguished marine nematode taxa. Several solutions were provided by DRAT and tested empirically to select the solution that cuts most efficiently. A combination of three enzymes and a single digest showed to be the best solution to separate the different clusters. Parallel to this, another tool is being developed to estimate the population size (qPCR). An improvement in qPCR estimation of gene copy number using an artificial reference is being performed for marine nematodes communities to quantify the abundance. Once developed, it is proposed to validate both methodologies by determining the spatial and temporal variability of benthic nematodes assemblages across different environments. The application of these high-throughput molecular approaches for benthic nematodes will improve sample throughput and their implementation more efficient and faster as indicator of ecological status of marine ecosystems.

Marine ecosystems of the North Pacific

Key Messages [pdf, 2.5 Mb] Climate Information Gaps Ocean Productivity Information gaps Living Marine Resources Information gaps Climate [pdf, 1.8 Mb] Productivity [pdf, 5.2 Mb] Nutrients Phytoplankton Zooplankton Living Resources [pdf, 10 Mb] Subarctic coastal systems Central oceanic gyres Temperate coastal and oceanic systems Marine mammals The Human Population [pdf, 5 Mb] Contaminants and Habitat Modifications Aquaculture Knowledge Gaps Glossary Ocean and Climate Changes [pdf, 4.1Mb] Highlights Introduction Atmospheric Indices Change in 1998/99 Comparison of Atmospheric Indices Authorship Yellow Sea / East China Sea [pdf, 2.3 Mb] Highlights Background Status and Trends Hydrography Chemistry Plankton Benthos Fish and invertebrates Marine birds and mammals Issues Critical factors causing change Authorship Japan/East Sea [pdf, 3.3 Mb] Highlights Background Status and Trends Hydrography Chemistry Plankton Fish and Invertebrates Marine Birds and Mammals Critical factors causing change Issues Authorship Okhotsk Sea [pdf, 1.7 Mb] Background Status and Trends Climate Hydrography Chemistry Plankton Fish and Invertebrates Marine Birds and Mammals Issues Critical factors causing change Authorship Oyashio / Kuroshio [pdf, 4.5 Mb] Highlights Background Status and Trends Hydrography Plankton Fish and Invertebrates Marine Birds and Mammals Issues Authorship Western Subarctic Gyre [pdf, 4.5 Mb] Highlights Background Status and Trends Hydrography Chemistry Plankton Fish and Invertebrates Marine Birds and Mammals Issues Authorship Bering Sea [pdf, 2.2 Mb] Highlights Background Status and Trends Hydrography Chemistry Plankton Fish and Invertebrates Marine Birds and Mammals Critical Factors Causing Change Issues Authorship Gulf of Alaska [pdf, 2.6 Mb] Highlights Background Status and trends Hydrography Chemistry Plankton Fish and Invertebrates Marine birds and mammals Critical factors causing change Issues Authorship California Current [pdf, 2.7 Mb] Highlights Background Status and Trends Hydrography Chemistry Plankton Fish and Invertebrates Marine Birds and Mammals Critical Factors Causing Change Issues Authorship Gulf of California [pdf, 1.7 Mb] Highlights Background Status and Trends Hydrography Chemistry Plankton Fisheries Marine Birds and Mammals Critical Factors Causing Change Issues Authorship Transition Zone [pdf, 2.5 Mb] Background Status and Trends Hydrography Chemistry Plankton Fish and Invertebrates Marine Birds and Mammals Issues Authorship Tuna [pdf, 1.5 Mb] Highlights Background Pacific bluefin tuna Albacore tuna Status and trends Ecosystem model and climate forcing Authorship Pacific halibut [pdf, 1.1 Mb] Background The Fishery Climate Influences Authorship Pacific salmon [Updated, pdf, 0.4 Mb] Background Status and Trends Washington, Oregon, and California British Columbia Southeast Alaska Central Alaska Western Alaska Russia Japan Authorship References [pdf, 0.5 Mb]

Illustrated key to the genera of free-living marine nematodes of the Order Enoplida

A pictorial key to US genera of free-living marine nematodes in the order Enoplida is presented. Specific morphological and anatomical features are iUustrated to facilitate use of the key. The purpose of this work is to provide a single key to the genera of enoplid nematodes to facilitate identification of these organisms by nematologists and marine biologists working with meiofauna. (PDF file contains 32 pages.)

Preparing for and adapting to climate change impacts: Next steps for the Washington state department of National Resources Aquatic Resources Program

In response to a growing body of research on projected climate change impacts to Washington State’s coastal areas, the Washington State Department of Natural Resources’ (DNR) Aquatic Resources Program (the Program) initiated a climate change preparedness effort in 2009 via the development of a Climate Change Adaptation Strategy (the Strategy)i. The Strategy answers the question “What are the next steps that the Program can take to begin preparing for and adapting to climate change impacts in Washington’s coastal areas?” by considering how projected climate change impacts may effect: (1) Washington’s state-owned aquatic landsii, (2) the Program’s management activities, and (3) DNR’s statutorily established guidelines for managing Washington’s state-owned aquatic lands for the benefit of the public. The Program manages Washington’s state-owned aquatic lands according to the guidelines set forth in Revised Code of Washington 79-105-030, which stipulates that DNR must manage state-owned aquatic lands in a manner which provides a balance of the following public benefits: (1) Encouraging direct public uses and access; (2) Fostering water-dependent uses; (3) Ensuring environmental protection; (4) Utilizing renewable resources. (RCW 79-105-030) The law also stipulates that generating revenue in a manner consistent with these four benefits is a public benefit (RCW 79-105-030). Many of the next steps identified in the Strategy build off of recommendations provided by earlier climate change preparation and adaptation efforts in Washington State, most notably those provided by the Preparation and Adaptation Working Group, which were convened by Washington State Executive Order 70-02 in 2007, and those made in the Washington Climate Change Impacts Assessment (Climate Impacts Group, 2009). (PDF contains 4 pages)

Mafia marine resources in peril

The rich marine resource of the Mafia District, Tanzania, especially its coral reefs and mangroves, are in danger of collapse. The proposed marine park faces chronic problems of dynamite fishing and coral mining. The Mafia fisheries resources and the importance of coral reefs are presented together with proposed measures to rescue the Mafia marine environment.

Video technology applied to the management of Bahrain's marine resources

Video technology has been used as a tool in research for many years. However, its widespread use as a fisheries management tool has been limited due to its relatively high cost. This is changing as video technology becomes a household commodity now widely available throughout the world.

Reef Habitats in the Middle Atlantic Bight: Abundance, Distribution, Associated Biological Communities, and Fishery Resource Use

One particular habitat type in the Middle Atlantic Bight is not well recognized among fishery scientists and managers, although it is will known and used by recreational and commercial fisheries. This habitat consists of a variety of hard-surface, elevated relief "reef" or reef-like environments that are widely distributed across the predominantly flat or undulating, sandy areas of the Bight and include both natural rocky areas and man-made structures, e.g. shipwrecks and artificial reefs. Although there are natural rock and shellfish reefs in southern New England coastal waters and estuaries throughout the Bight, most reef habitats in the region appear to be man-made reef habitat modification/creation may be increasing. Very little effort has been devoted to the study of this habitat's distribution, abundance, use by living marine resources and associated biological communities (except on estuarine oyster reefs) and fishery value or management. This poorly studied and surveyed habitat can provide fish refuge from trawls and can be a factor in studies of the distribution and abundance of a variety of reef-associated fishery resources. This review provides a preliminary summary of information found on relative distribution and abundance of reef habitat in the Bight, the living marine resources and biological communities that commonly use it, threats to this habitat and its biological resources, and the value or potential value of artificial reefs to fishery or habitat and its biological resources, and the value or potential value of artificial reefs to fishery or habitat managers. The purpose of the review is to initiate an awareness among resource managers about this habitat, its role in resource management, and the need for research.