High-resolution, unstructured meshes for hydrodynamic models of the Great Barrier Reef, Australia

Accuracy and mesh generation are key issues for the high-resolution hydrodynamic modelling of the whole Great Barrier Reef. Our objective is to generate suitable unstructured grids that can resolve topological and dynamical features like tidal jets and recirculation eddies in the wake of islands. A new strategy is suggested to refine the mesh in areas of interest taking into account the bathymetric field and an approximated distance to islands and reefs. Such a distance is obtained by solving an elliptic differential operator, with specific boundary conditions. Meshes produced illustrate both the validity and the efficiency of the adaptive strategy. Selection of refinement and geometrical parameters is discussed. (c) 2006 Elsevier Ltd. All rights reserved.

Determination of controls on Holocene barrier progradation through application of OSL dating: The Ilha Comprida Barrier example, Southeastern Brazil

Barrier development during the Holocene is studied using the example of the Ilha Comprida, Southeastern Brazil. Aerial photos, facies analysis, and optically stimulated luminescence dating are used to define the barrier emergence and evolution. Optically stimulated luminescence ages and facies successions indicate that the Ilha Comprida probably began as a Holocene transgressive barrier island 6000 years ago, just before the last relative sea-level maximum. Since then the barrier has progradated through the addition of curved beach ridges. Based on beach ridge alignments, six units of growth are identified with two growth directions, transverse and longitudinal. Rates of progradation with transverse growth vary from 0.13 to 4.6 m/year. Rates of longitudinal growth to NE range from 5.2 to 30 m/year. Variation in coastal progradation rates and sediment retention during the last 6000 years is compared with climate, physiography and relative sea-level changes. The physiography, represented by pre-Cenozoic hills, is the major control on sediment retention and alternation between longitudinal and transverse growth. Climate variations, such as the Little Ice Age event, apparently control the formation of ridges types: beach ridges, foredunes, and blowouts. These results allow the use of the Ilha Comprida Barrier as an example to analyze the major controls on barriers progradation. (C) 2011 Elsevier B.V. All rights reserved.

The global mio-pliocene climatic equability and coastal ostracod faunas of southeast Australia

This study on the Mio–Pliocene ostracod successions of southeast Australia outlines several faunal events indicative of climate warming and/or increased rainfall events. Ostracod faunas associated with a late Late Miocene sea level rise event suggest that the climate of this time in southeast Australia was similar to, or slightly warmer than that of present day southeast Australia. However, it was probably wetter and significantly warmer than immediately preceding (mid Late Miocene) palaeoclimatic conditions within the region. Evidence for a change to wetter and warmer conditions during the late Late Miocene is seen in the appearance of various extant euryhaline and semi-thermophilic ostracod species in coastal ostracod faunas. The appearance of euryhaline species, which are mostly absent from older shallow marine Cenozoic strata of the Bass Strait hinterland, suggests a major influx of fresh water into coastal marine settings, which contributed to the initial phase of development of the southeast Australian late Neogene barrier coastline and associated marginal marine palaeoenvironments.

During the time interval latest Miocene to earliest Pliocene, and during the early Late Pliocene, two subsequent global sea level rise events are also preserved in the southeast Australian coastal plain. Many of the species present in ostracod faunas associated with these two events are the same as in older local late Late Miocene faunas. In earliest (?) Pliocene faunas, there is minor evidence for the reappearance of semi-thermophilic ostracods. Faunas of early Late Pliocene age often exhibit a conspicuous faunal dominance by, or large abundance of euryhaline species, indicating the particularly strong influence of fresh water influxes into coastal marine palaeoenvironments. This may reflect the presence of especially wet local temperate palaeoclimatic conditions during a time of equable global climates.

Succeeding estuarine, lagoonal and coastal embayment ostracod faunas of late Late Pliocene age are associated with marginal marine sediments that are interbedded with coastal dune aeolianites. This suggests an overall seaward retreat of marginal marine environments that was initiated by a major global sea level fall linked to the onset of cooler Late Pliocene and Quaternary global climates.

The broad-scale distribution of five jellyfish species across a temperate coastal environment

Jellyfish (medusae) are sometimes the most noticeable and abundant members of coastal planktonic communities, yet ironically, this high conspicuousness is not reflected in our overall understanding of their spatial distributions across large expanses of water. Here, we set out to elucidate the spatial (and temporal) patterns for five jellyfish species (Phylum Cnidaria, Orders Rhizostomeae and Semaeostomeae) across the Irish & Celtic Seas, an extensive shelf-sea area at Europe’s northwesterly margin encompassing several thousand square kilometers. Data were gathered using two independent methods: (1) surface-counts of jellyfish from ships of opportunity, and (2) regular shoreline surveys for stranding events over three consecutive years. Jellyfish species displayed distinct species-specific distributions, with an apparent segregation of some species. Furthermore, a different species composition was noticeable between the northern and southern parts of the study area. Most importantly, our data suggests that jellyfish distributions broadly reflect the major hydrographic regimes (and associated physical discontinuities) of the study area, with mixed water masses possibly acting as a trophic barrier or non-favourable environment for the successful growth and reproduction of jellyfish species.

Use of synthetic aperture radar for recognition of Coastal Geomorphological Features, land-use assessment and shoreline changes in Bragança coast, Pará, Northern Brazil

Imagens de radar de abertura sintética (SAR) vem sendo bem mais utilizadas do que antes nas aplicações de geociências em regiões tropicais úmidas. Nesta investigação, uma imagem RADARSAT-1, na banda C, polarização HH adquirida em 1998 foi usada para o mapeamento costeiro e avaliação da cobertura da terra na área de Bragança, norte do Brasil. Imagem do radar aerotransportado GEMS-1000, na banda X, polarização HH, adquirida em 1972 durante o projeto RADAM foi também utilizada para avaliar as variações costeiras ocorridas nas últimas três décadas. A pesquisa tem confirmado a utilidade da imagem RADARSAT-1 para o mapeamento geomorfológico e avaliação da cobertura da terra, particularmente em costas de manguezal de macromaré. Além disso, um novo método para estimar as variações da linha de costa baseado na superposição de vetores extraídos de diferentes imagens SAR, com alta acurácia geométrica, tem mostrado que a planície costeira de Bragança tem estado sujeita a severa erosão responsável pelo recuo de aproximadamente 32 km² e acreção de 20 km², resultando em uma perda de área de manguezal de aproximadamente 12 km². Como perspectiva de aplicação, dados SAR orbitais e aerotransportados provaram ser uma importante fonte de informação tanto para o mapeamento geomorfológico, quando para o monitoramento de modificações costeiras em ambientes tropicais úmidos.

Tracing the source of groundwater for three different coastal peatlands along Lake Superior

The goal of this project was to investigate the influence of a large inland lake on adjacent coastal freshwater peatlands. The specific aim was to determine the source of groundwater for three differently formed peatlands located on the southern shore of Lake Superior. The groundwater study was conducted at Bete Grise, a peatland complex in a dune-swale system; Pequaming, a peatland developed in the swale of a tombolo; and Lightfoot Bay, a peatland developed in a barrier beach wetland complex. To determine the source of groundwater in the peatlands, transects of six groundwater monitoring wells were established at each study site, covering distinctly different vegetation zones. At Pequaming and Lightfoot Bay the transects monitored two vegetation zones: transition zone from upland and open fen. At Bete Grise, the transects monitored dunes and swales. Additionally, at all three sites, upland groundwater was monitored using three wells that were installed into the adjacent upland forest. Biweekly measurements of well water pH and specific conductance were carried out from May to October of 2010. At each site, vegetation cover, peat depths and surface elevations were determined and compared to Lake Superior water levels. From June 14 – 17, July 20 – 21 and September 10 – 12, stable isotopes of oxygen (18O/16O) ratios were measured in all the wells and for Lake Superior water. A mixing model was used to estimate the percentage of lake water influencing each site based on the oxygen isotope ratios. During the sampling period, groundwater at all three sites was supported primarily by upland groundwater. Pequaming was approximately 80 % upland groundwater supported and up to 20 % Lake water supported in the uppermost 1 m layer of peat column of the transition zone and open fen. Bete Grise and Lightfoot Bay were 100 % upland groundwater supported throughout the season. The height of Lake Superior was near typical levels in 2010. In years when the lake level is higher, Lake water could intrude into the adjacent peatlands. However, under typical hydrologic conditions, these coastal peatlands are primarily supported by upland groundwater.

A 20 m spatial resolution seamless multisource Digital Elevation/Depth Model for Lizard Island, northern Great Barrier Reef

Hydrographers have traditionally referred to the nearshore area as the "white ribbon" area due to the challenges associated with the collection of elevation data in this highly dynamic transitional zone between terrestrial and marine environments. Accordingly, available information in this zone is typically characterised by a range of datasets from disparate sources. In this paper we propose a framework to 'fill' the white ribbon area of a coral reef system by integrating multiple elevation and bathymetric datasets acquired by a suite of remote-sensing technologies into a seamless digital elevation model (DEM). A range of datasets are integrated, including field-collected GPS elevation points, terrestrial and bathymetric LiDAR, single and multibeam bathymetry, nautical chart depths and empirically derived bathymetry estimations from optical remote sensing imagery. The proposed framework ranks data reliability internally, thereby avoiding the requirements to quantify absolute error and results in a high resolution, seamless product. Nested within this approach is an effective spatially explicit technique for improving the accuracy of bathymetry estimates derived empirically from optical satellite imagery through modelling the spatial structure of residuals. The approach was applied to data collected on and around Lizard Island in northern Australia. Collectively, the framework holds promise for filling the white ribbon zone in coastal areas characterised by similar data availability scenarios. The seamless DEM is referenced to the horizontal coordinate system MGA Zone 55 - GDA 1994, mean sea level (MSL) vertical datum and has a spatial resolution of 20 m.

Blooms of the cyanobacterium Lyngbya majuscula in coastal Queensland, Australia: disparate sites, common factors

During the last decade there has been a significant rise in observations of blooms of the toxic cyanobacterium, Lyngbya majuscula along the east coast of Queensland, Australia. Whether the increase in cyanobacterial abundance is a biological indicator of widespread water quality degradation or also a function of other environmental change is unknown. A bioassay approach was used to assesses the potential for runoff from various land uses to stimulate productivity of L. majuscula. In Moreton Bay, L. majuscula productivity was significantly (p < 0.05) stimulated by soil extracts, which were high in phosphorus, iron and organic carbon. Productivity of L. majuscula from the Great Barrier Reef was also significantly (p < 0.05) elevated by iron and phosphorus rich extracts, in this case seabird guano adjacent to the bloom site. Hence, it is possible that other L. majuscula blooms are a result of similar stimulating factors (iron, phosphorus and organic carbon), delivered through different mechanisms. (c) 2004 Elsevier Ltd. All rights reserved.

Water quality in the Great Barrier Reef region: responses of mangrove, seagrass and macroalgal communities

Marine plants colonise several interconnected ecosystems in the Great Barrier Reef region including tidal wetlands, seagrass meadows and coral reefs. Water quality in some coastal areas is declining from human activities. Losses of mangrove and other tidal wetland communities are mostly the result of reclamation for coastal development of estuaries, e.g. for residential use, port infrastructure or marina development, and result in river bank destabilisation, deterioration of water clarity and loss of key coastal marine habitat. Coastal seagrass meadows are characterized by small ephemeral species. They are disturbed by increased turbidity after extreme flood events, but generally recover. There is no evidence of an overall seagrass decline or expansion. High nutrient and substrate availability and low grazing pressure on nearshore reefs have lead to changed benthic communities with high macroalgal abundance. Conservation and management of GBR macrophytes and their ecosystems is hampered by scarce ecological knowledge across macrophyte community types. (c) 2004 Elsevier Ltd. All rights reserved.

Adaptive management and its role in managing Great Barrier Reef water quality

Adaptive management is the pathway to effective conservation, use and management of Australia’s coastal catchments and waterways. While the concepts of adaptive management are not new, applications involving both assessment and management responses are indeed limited at the national and regional scales. This paper outlines the components of a systematic framework for linking scientific knowledge, existing tools, planning approaches and participatory processes to achieve healthy regional partnerships between community, industry, government agencies and science providers to overcome institutional barriers and uncoordinated monitoring. The framework developed by the Coastal CRC (www.coastal.crc.org.au/amf/amf_index.htm) is hierarchical in the way it displays information to allow associated frameworks to be integrated, and represents a construct in which processes, information, decision tools and outcomes are brought together in a structured and transparent way for adaptive catchment and coastal management. This paper proposes how an adaptive management approach could be used to benefit the implementation of the Reef Water Quality Protection Plan (RWQPP).

Enhanced energy status of corals on coastal, high-turbidity reefs

Sedimentation and high turbidity have long been considered a major threat to corals, causing world-wide concern for the health of coral reefs in coastal environments. While studies have demonstrated that sediment conditions characteristic of inshore reefs cause stress in corals, the consequences of such conditions for the physiological status of corals require testing in field situations. Here, I compare the size of energy stores (as lipid content), a proxy for physiological condition, of 2 coral species (Turbinaria mesenterina and Acropora valida) between coastal and offshore environments. Corals on coastal reefs contained 4-fold (T mesenterina) and 2-fold (A. valida) more lipid than conspecifics offshore, despite 1 order of magnitude higher turbidity levels inshore. Results were consistent across 4 sites in each environment. Reproductive investment in A. valida (a seasonal mass spawner) did not vary between environments, suggesting that the larger lipid stores in corals on coastal reefs are mainly somatic energy reserves. These results demonstrate that the environmental conditions on inshore, high-turbidity reefs do not always impact negatively on the physiology of corals. The contrasting lipid levels of T. mesenterina between environments may explain its greater success on coastal reefs.

Pesticide and herbicide residues in sediments and seagrasses from the Great Barrier Reef world heritage area and Queensland coast

Pesticides and herbicides including organochlorine compounds have had extensive current and past application by Queensland's intensive coastal agriculture industry as web as for a wide range of domestic, public health and agricultural purposes in urban areas, The persistent nature of these types of compounds together with possible continued illegal use of banned organochlorine compounds raises the potential for continued long-term chronic exposure to plants and animals of the Great Barrier Reef. Sediment and seagrass samples were collected from 16 intertidal and 25 subtidal sampling sites between Torres Strait and Townsville, near Mackay and Gladstone, and in Hervey and Moreton Bays in 1997 and 1998 and analysed for pesticide and herbicide residues. Low levels of atrazine (0.1-0.3 mug kg(-1)), diuron (0.2-10.1 mug kg(-1)), lindane (0.08-0.19 mug kg(-1)), dieldrin (0.05-0.37 mug kg(-1)), DDT (0.05-0.26 mug kg(-1)), and DDE (0.05-0.26 mug kg(-1)) were detected in sediments and/or seagrasses. Contaminants were mainly detected in samples collected along the high rainfall, tropical coast between Townsville and Port Douglas and in Moreton Bay. Of the contaminants detected, the herbicide diuron is of most concern as the concentrations detected have some potential to impact local seagrass communities, (C) 2000 Elsevier Science Ltd. All rights reserved.