Thesis abstract. Applying species distribution modeling for the conservation of Iberian protected invertebrates

This article outlines the approaches to modeling the distribution of threatened invertebrates using data from atlases, museums and databases. Species Distribution Models (SDMs) are useful for estimating species’ ranges, identifying suitable habitats, and identifying the primary factors affecting species’ distributions. The study tackles the strategies used to obtain SDMs without reliable absence data while exploring their applications for conservation. I examine the conservation status of Copris species and Graellsia isabelae by delimiting their populations and exploring the effectiveness of protected areas. I show that the method of pseudo‐absence selection strongly determines the model obtained, generating different model predictions along the gradient between potential and realized distributions. After assessing the effects of species’ traits and data characteristics on accuracy, I found that species are modeled more accurately when sample sizes are larger, no matter the technique used.

Assessing the effects of pseudo-absences on predictive distribution model performance

Modelling species distributions with presence data from atlases, museum collections and databases is challenging. In this paper, we compare seven procedures to generate pseudoabsence data, which in turn are used to generate GLM-logistic regressed models when reliable absence data are not available. We use pseudo-absences selected randomly or by means of presence-only methods (ENFA and MDE) to model the distribution of a threatened endemic Iberian moth species (Graellsia isabelae). The results show that the pseudo-absence selection method greatly influences the percentage of explained variability, the scores of the accuracy measures and, most importantly, the degree of constraint in the distribution estimated. As we extract pseudo-absences from environmental regions further from the optimum established by presence data, the models generated obtain better accuracy scores, and over-prediction increases. When variables other than environmental ones influence the distribution of the species (i.e., non-equilibrium state) and precise information on absences is non-existent, the random selection of pseudo-absences or their selection from environmental localities similar to those of species presence data generates the most constrained predictive distribution maps, because pseudo-absences can be located within environmentally suitable areas. This study showsthat ifwe do not have reliable absence data, the method of pseudo-absence selection strongly conditions the obtained model, generating different model predictions in the gradient between potential and realized distributions.

Validation of a fast method for quantification of intra-abdominal and subcutaneous adipose tissue for large-scale human studies

Central obesity is the hallmark of a number of non-inheritable disorders. The advent of imaging techniques such asMRI has allowed for a fast and accurate assessment of body fat content and distribution. However, image analysis continues to be one of the major obstacles to the use of MRI in large-scale studies. In this study we assess the validity of the recently proposed fat–muscle quantitation system (AMRATM Profiler) for the quantification of intra-abdominal adipose tissue (IAAT) and abdominal subcutaneous adipose tissue (ASAT) from abdominal MR images. Abdominal MR images were acquired from 23 volunteers with a broad range of BMIs and analysed using sliceOmatic, the current gold-standard, and the AMRATM Profiler based on a non-rigid image registration of a library of segmented atlases. The results show that there was a highly significant correlation between the fat volumes generated by the two analysis methods, (Pearson correlation r = 0.97, p < 0.001), with the AMRATM Profiler analysis being significantly faster (~3 min) than the conventional sliceOmatic approach (~40 min). There was also excellent agreement between the methods for the quantification of IAAT (AMRA 4.73 ± 1.99 versus sliceOmatic 4.73 ± 1.75 l, p = 0.97). For the AMRATM Profiler analysis, the intra-observer coefficient of variation was 1.6% for IAAT and 1.1% for ASAT, the inter-observer coefficient of variationwas 1.4%for IAAT and 1.2%for ASAT, the intra-observer correlationwas 0.998 for IAAT and 0.999 for ASAT, and the inter-observer correlation was 0.999 for both IAAT and ASAT. These results indicate that precise and accurate measures of body fat content and distribution can be obtained in a fast and reliable form by the AMRATM Profiler, opening up the possibility of large-scale human phenotypic studies.

Targetting of the ventro-intermediate nucleus using ultra-high field (7T) MRI for gamma knife surgery purposes: A pilot in vivo study on healthy subjects.

INTRODUCTION: Gamma Knife surgery (GKS) is a non-invasive neurosurgical stereotactic procedure, increasingly used as an alternative to open functional procedures. This includes targeting of the ventro-intermediate nucleus of the thalamus (e.g. Vim) for tremor. We currently perform an indirect targeting, as the Vim is not visible on current 3Tesla MRI acquisitions. Our objective was to enhance anatomic imaging (aiming at refining the precision of anatomic target selection by direct visualisation) in patients treated for tremor with Vim GKS, by using high field 7T MRI. MATERIALS AND METHODSH: Five young healthy subjects were scanned on 3 (T1-w and diffusion tensor imaging) and 7T (high-resolution susceptibility weighted images (SWI)) MRI in Lausanne. All images were further integrated for the first time into the Gamma Plan Software(®) (Elekta Instruments, AB, Sweden) and co-registered (with T1 was a reference). A simulation of targeting of the Vim was done using various methods on the 3T images. Furthermore, a correlation with the position of the found target with the 7T SWI was performed. The atlas of Morel et al. (Zurich, CH) was used to confirm the findings on a detailed analysis inside/outside the Gamma Plan. RESULTS: The use of SWI provided us with a superior resolution and an improved image contrast within the basal ganglia. This allowed visualization and direct delineation of some subgroups of thalamic nuclei in vivo, including the Vim. The position of the target, as assessed on 3T, perfectly matched with the supposed one of the Vim on the SWI. Furthermore, a 3-dimensional model of the Vim-target area was created on the basis of the obtained images. CONCLUSION: This is the first report of the integration of SWI high field MRI into the LGP, aiming at the improvement of targeting validation of the Vim in tremor. The anatomical correlation between the direct visualization on 7T and the current targeting methods on 3T (e.g. quadrilatere of Guyot, histological atlases) seems to show a very good anatomical matching. Further studies are needed to validate this technique, both by improving the accuracy of the targeting of the Vim (potentially also other thalamic nuclei) and to perform clinical assessment.

Atlas de toutes les parties connues du globe terrestre : dressé pour l'Histoire philosophique et politique des établissemens et du commerce des Européens dans les deux Indes (1780)

Atlas to: Histoire philosophique et politique des établissemens et du commerce des Européens dans les deux Indes / Guillaume Thomas Raynal. - Genêve : J.-L. Pellet, 1780 Author statement on maps: Par M. Bonne, ingénieur-hydrographe de la Marine Maps numbered: 1-17, 17 bis-49. [23] leaves of tables at end are lacking in Special Collections' copy

Analyse de maillages surfaciques par construction et comparaison de modèles moyens et par décomposition par graphes s’appuyant sur les courbures discrètes : application à l’étude de la cornée humaine

Réalisé en cotutelle avec Aix Marseille Université.

Una eina innovadora per a la informació i la divulgació geogràfica: l’Atles comarcal de Catalunya en format digital

Due to the edition of the new Atles comarcal de Catalunya by the Institut Cartogràfic de Catalunya in digital format, we look at the structure of their contents and the dynamics of its use. Likewise, it is detailed which methodology was utilized to perform it. Finally, some reflections on the innovations that this new product entails in textual and cartographic areas are proposed, especially related to the current socioeconomic context and new employed technologies

Els Atles comarcals de Catalunya: un producte innovador per a uns continguts tradicionals

La present comunicació pretén ressenyar l’aportació dels Atles comarcals de Catalunya al coneixement del nostre territori com una obra no només de caire acadèmic sinó també divulgatiu i aplicat. En primer lloc, es constata la filiació de l’obra al llegat de la geografia clàssica catalana i a les aportacions tradicionals —monografies i les obres generals― que han disseccionat el país des de l’òptica comarcal. En segon lloc, es detalla el seu procés de concepció i elaboració. Finalment, es destaquen les innovacions que el nou format CD-Rom i les possibilitats d’interacció cartogràfica amb servidors externs suposen en el sentit d’innovació respecte de les aportacions anteriors

Birding 2.0: Citizen Science and Effective Monitoring in the Web 2.0 World

The amateur birding community has a long and proud tradition of contributing to bird surveys and bird atlases. Coordinated activities such as Breeding Bird Atlases and the Christmas Bird Count are examples of "citizen science" projects. With the advent of technology, Web 2.0 sites such as eBird have been developed to facilitate online sharing of data and thus increase the potential for real-time monitoring. However, as recently articulated in an editorial in this journal and elsewhere, monitoring is best served when based on a priori hypotheses. Harnessing citizen scientists to collect data following a hypothetico-deductive approach carries challenges. Moreover, the use of citizen science in scientific and monitoring studies has raised issues of data accuracy and quality. These issues are compounded when data collection moves into the Web 2.0 world. An examination of the literature from social geography on the concept of "citizen sensors" and volunteered geographic information (VGI) yields thoughtful reflections on the challenges of data quality/data accuracy when applying information from citizen sensors to research and management questions. VGI has been harnessed in a number of contexts, including for environmental and ecological monitoring activities. Here, I argue that conceptualizing a monitoring project as an experiment following the scientific method can further contribute to the use of VGI. I show how principles of experimental design can be applied to monitoring projects to better control for data quality of VGI. This includes suggestions for how citizen sensors can be harnessed to address issues of experimental controls and how to design monitoring projects to increase randomization and replication of sampled data, hence increasing scientific reliability and statistical power.

Mortalidade por câncer de boca e condição sócio-econômica no Brasil

BORGES,D. M. L.et al. Mortalidade por câncer de boca e condição sócio-econômica no Brasil.Cad. Saúde Pública, Rio de Janeiro, v.25,n.2, p.321-327, fev, 2009

Prevalence of orofacial clefts and social factors in Brazil

RODRIGUES, Katamara et al. Prevalence of orofacial clefts and social factors in Brazil. Brazilian oral research, v.23, n. 1, p. 38-42, 2009.Disponivel em: . Acesso em: 04 out. 2010.

Atlas municipais elaborados por professores: a experiência conjunta de Limeira, Rio Claro e Ipeúna

Na última década, as recomendações curriculares de história e geografia para o ensino fundamental incentivaram a produção de atlas municipais, uma vez que permitem incluir num só volume mapas, textos, fotografias, gráficos, entre outras fontes de informação, a respeito do espaço local. Este artigo apresenta uma experiência em que a produção de atlas municipais se tornou projeto de pesquisa colaborativa entre pesquisadores da universidade e professores de geografia, história e ciências de três municípios. Problemas como recorte curricular, linguagem cartográfica e formação de professores consistem nos pontos principais da pesquisa, a qual traz uma contribuição significativa para a constituição de uma linha de pesquisa que vem sendo chamada de cartografia escolar.

Atlas escolares municipais: a moda e os professores

Neste artigo abordamos o crescimento das pesquisas e da produção de atlas escolares municipais e a relação entre pesquisadores e professores, considerando o atual contexto curricular e a concepção do trabalho docente segundo a racionalidade técnica que caracteriza as reformas educacionais na sociedade neoliberal. em uma análise dos trabalhos apresentados sobre o tema atlas escolares, nos cinco eventos científicos realizados no Brasil sobre cartografia para crianças, notamos que predomina a produção desses materiais por pesquisadores e especialistas, externa ao âmbito do trabalho dos professores.

Análise da paisagem para o planejamento e a gestão da conservação da Mata Atlântica

Landscape is dynamic, having complex nature, with tangible and intangible dimensions, presenting a continuous evolution process. The aim of this research were based on the identification and classification of landscapes in units and subunits, from the ownership by individuals; the development of a methodology to assist in the planning and management, conciliating conservation of natural areas with anthropic activities; and, from the information gathered, evaluate the different social groups aiming to design a landscape from the sustainable development perspective; thus better understanding both cultural and forest fragmentation processes, in the city of Ouro Preto, Minas Gerais. The research analyzed the current landscape and its historical evolution, distinguishing between material and immaterial dimensions. Information was raised from field trips, soil types, relief, slope, drainage, conservation units, administrative zoning, urban areas, natural resources, economy, tax raising, transport and building infrastructure, satellite images, types of management applied to the preservation or conservation of forests and fields, and semi-structured interviews with the various actors that modify and transform the territory, thus making a balance between the built landscape and the demands of the society and ecosystems. Results were composed by a map of land use in 2011; a map of landscape units and their subunits, with their appropriate definitions; a map with five levels of activities intensity, with their respective descriptions; and raising barriers to improving the welfare of the actors and the integrity of ecosystems. The number of generated ecosystem services are difficult to measure, but its benefits are useful for everyone. The physical changes are a reflection of the economy, which caused environmental impacts, mainly related to mining activities, tourism, agriculture and conservation of natural areas, all requiring ideally a shared management. In this sense, the landscape needs a management to create sustainable alternatives to anthropic activities. The dynamics of the landscape has been shaped by a slow evolution, set by mining activities due to the high financial revenues, there were areas of revegetation after clearcuts in the past, and now tourism lacks structure. The city has great potential for development projects with payments for environmental services, however, gaps for shared management exists.