A close phylogenetic relationship between Sipuncula and Annelida evidenced from the complete mitochondrial genome sequence of Phascolosoma esculenta

Background: There are many advantages to the application of complete mitochondrial (mt) genomes in the accurate reconstruction of phylogenetic relationships in Metazoa. Although over one thousand metazoan genomes have been sequenced, the taxonomic sampling is highly biased, left with many phyla without a single representative of complete mitochondrial genome. Sipuncula (peanut worms or star worms) is a small taxon of worm-like marine organisms with an uncertain phylogenetic position. In this report, we present the mitochondrial genome sequence of Phascolosoma esculenta, the first complete mitochondrial genome of the phylum. Results: The mitochondrial genome of P. esculenta is 15,494 bp in length. The coding strand consists of 32.1% A, 21.5% C, 13.0% G, and 33.4% T bases (AT = 65.5%; AT skew = -0.019; GC skew = -0.248). It contains thirteen protein-coding genes (PCGs) with 3,709 codons in total, twenty-two transfer RNA genes, two ribosomal RNA genes and a non-coding AT-rich region (AT = 74.2%). All of the 37 identified genes are transcribed from the same DNA strand. Compared with the typical set of metazoan mt genomes, sipunculid lacks trnR but has an additional trnM. Maximum Likelihood and Bayesian analyses of the protein sequences show that Myzostomida, Sipuncula and Annelida (including echiurans and pogonophorans) form a monophyletic group, which supports a closer relationship between Sipuncula and Annelida than with Mollusca, Brachiopoda, and some other lophotrochozoan groups. Conclusion: This is the first report of a complete mitochondrial genome as a representative within the phylum Sipuncula. It shares many more similar features with the four known annelid and one echiuran mtDNAs. Firstly, sipunculans and annelids share quite similar gene order in the mitochondrial genome, with all 37 genes located on the same strand; secondly, phylogenetic analyses based on the concatenated protein sequences also strongly support the sipunculan + annelid clade (including echiurans and pogonophorans). Hence annelid "key-characters" including segmentation may be more labile than previously assumed.

Lamellibrachia anaximandrin. sp., a new vestimentiferan tubeworm (Annelida) from the Mediterranean, with notes on frenulate tubeworms from the same habitat

A new species of lamellibrachiid vestimentiferan, Lamellibrachia anaximandri n. sp., has been found in the Eastern Mediterranean, close to cold seeps of fluid carrying dissolved methane and sources of sulfide in superficial sediments. It occurs at about 1100 to 2100 m depth, on some of the mud volcanoes on the Anaximander Mountains, south of Turkey, on the Mediterranean Ridge, south of Crete, and on the Nile deep-sea fan. In addition, it has been obtained from rotting paper inside a sunken ship, torpedoed in 1915 and lying at 2800 m depth, southeast of Crete. Some frenulate pogonophores also occur on the mud volcanoes (including a species of Siboglinum resembling S. carpinei and tubes of other unidentified genera). The new Lamellibrachia is the first vestimentiferan species to be described from the Mediterranean. It differs from L. luymesi taken from the Gulf of Mexico population in the very weak development of collars on its tube and in having a smaller number of pairs of branchial lamellae in the branchial plume. Sequencing of the COI and the mt16S genes confirms a difference at the species level between the new species and L. luymesi, and a difference between these two species and four described species of Lamellibrachia from the Pacific Ocean. The largest individuals of L. anaximandri n. sp. may be many years old, but there are numerous young individuals at some sites, showing that favourable conditions are available for settlement and early growth. The development of the branchial plume in a series of young stages reveals that the sheath lamellae, which are characteristic of the genus Lamellibrachia, begin to form only after the establishment of several pairs of branchial lamellae. Examination of the adult trophosome by transmission electron microscopy shows Gram-negative bacteria without internal stacked membranes, indicating that the symbionts are most probably sulfide oxidizing.

Composición y estructura de las comunidades de poliquetos (annelida: polychaeta) asociadas a fondos blandos de la costa occidental de Baja California, México.

Tesis (Doctor en Ciencias Biológicas con acentuación en Manejo de Vida Silvestre y Desarrollo Sustentable) UANL, 2014.

Morphology of terebelliform polychaetes (Annelida: Polychaeta: Terebelliformia), with a focus on Terebellidae

The morphology of terebelliform polychaetes was investigated for a phylogenetic study focused on Terebellidae. For this study, specimens belonging to 147 taxa, preferably type material or specimens from type localities or areas close to them, were examined under stereo, light and scanning electron microscopes. The taxa examined were 1 Pectinariidae, 2 Ampharetidae, 2 Alvinellidae, 8 Trichobranchidae, and 134 Terebellidae, which included 8 Polycirrinae, 15 Thelepodinae, and 111 Terebellinae. A comparison of the morphology, including prostomium, peristomium, anterior segments and lobes, branchiae, glandular venter, nephridial and genital papillae, notopodia and notochaetae, neuropodia and neurochaetae, and posterior end, was made of all the currently recognized families of terebelliform polychaetes, with special emphasis on Terebellidae. A discussion of the characters useful to distinguish between genera is given. This character set will be used in a subsequent phylogenetic study (Nogueira & Hutchings in prep.)

Annelida, Hirudinida, Stibarobdella moorei (Oka, 1910): new distribution and host records.

The present report is the northernmost capture of the piscicolid leech Stibarobdella moorei in the western South Atlantic Ocean. This is also the first time S. moorei is found associated to a batoid fish in the Brazilian coast, the eyespot skate Atlantoraja cyclophora. Stibarobdella moorei was found fixed in the dorsal side of a male eyespot skate, caught by bottom trawl around of the São Paulo coast, southeastern Brazil. A brief description of the morphology of the parasite and a discussion on the taxonomic status of the S. moorei are presented.

Estudo histológico e histoquímico do aparelho excretor de Glossoscolex paulistus Michaelsen, 1926 (Oligochaeta, Glossoscolecidae)

The present study reveals that the excretory system of Glossoscolex paulistus is formed by open holonephridia (exonephridia). It is noticed that different zones are recognized in the nephridial canal, with defined histological and histochemical characteristics: 1) primary canal; 2) lobed canal; 3) first rounded segment; 4) afferent thin segment; 5) efferent thin segment; 6) second rounded segment; 7) ciliary tube; 8) clear canal; 9) pigmented canal; 10) intermediate canal; 11) bladder; 12) terminal canal; 13) nephridiopore. All these regions are intercellular and cilia are found in regions 1, 2, 3, 6, 7 and 13. The connections between afferent and efferent capillary of the vascular supply of the nephridium are made of capillary loops and dilatations which we call glomeruli in this paper. Filtering functions are suggested for the glomerulus. The response of the lobed canal and the first and second rounded segments to Gomori's reaction is strongly positive and this is found to coincide with the largest concentration of glomeruli in the main loops 1 and II, that suggests a higher filtration capacity for the canal and segments.

Oxygen uptake of active and aestivating earthworm Glosso scolex pa ulistus (Oligochaeta, Glossoscolecidae)

1. 1. The onset of or reactivation from aestivation in the earthworm Glossoscolex paulistus were dependent upon soil moisture. No evidence of temperature effect in the process was found either in field or laboratory data. 2. 2. Oxygen uptake measured in active and aestivating groups revealed remarkable reduction for aestivating earthworms at various temperatures studied. 3. 3. No evidences of temperature compensation in oxygen uptake was found in both groups of earthworms, indicating that reduction in oxygen uptake is the only adaptation for the aestivating G. paulistus. © 1985.

Comunidades macrobentônicas da Reserva Biológica do Lago Piratuba (Amapá – Brasil)

Caracterizou-se a estrutura das comunidades macrobentônicas em diferentes áreas e períodos climáticos da Reserva Biológica do Lago Piratuba (Amapá - Brasil). As amostragens ocorreram nos meses de junho e novembro de 2005 (cinturão lacustre meridional- lagos Comprido de cima, Bacia, Lodão, Grande, Canal Tabaco e Comprido de. baixo e foz do rio Araguari) e 2006 (cinturão lacustre oriental - lagos Piratuba, Jussara, Escara, Trindade, Maresia e Boiado e Rego do Duarte e sete locais da costa (áreas vegetada e não vegetada). Em cada local foram coletadas quatro amostras, com tubo de PVC de 0,0079 m2 , enterrado 20 cm no sedimento. Após coletadas as amostras foram passadas em malha de nylon de 0,3 mm de abertura e os organismos retidos fixados em formalina a 5%. A estrutura das comunidades variou sazonalmente, com marcantes modificações na densidade, composição específica, número de espécies, equitabilidade e diversidade entre ocasiões de amostragem e entre lagos e costa. Foram identificados 54 táxons pertencentes aos filos: Annelida , Arthropoda , Mollusca e Nemertea . No período chuvoso foram registrados 36 táxons e o seco 42. Annelida foi o táxon mais abundante, representando sempre mais que 48% do total de organismos. Os lagos foram dominados por larvas de Insecta , Mollusca e Oligochaeta . Na costa Polychaeta e Crustácea dominaram. Registrou-se nos lagos 32 táxons e densidade média de 667 ind.m -2 . Na costa foram identificados 34 táxons e 1353 ind.m -2 .A área não vegetada da costa foi mais rica, densa e equitativa. O cinturão lacustre meridional e o cinturão lacustre oriental responderam de forma distinta as mudanças sazonais nos seus descritores. Foram identificados três sub-ambientes para a comunidade bentônica: ambiente dulcícola - maioria dos lagos do cinturão meridional, com a fauna predominante de insetos; ambiente de transição entre a região de água doce e a região costeira com fauna mista ( Polychaeta e Insecta ); e, costa, com espécimes de Polychaeta e Crustacea . Os fatores ambientais que melhor se correlacionaram com as variações espaço-temporais na estrutura das comunidades bentônicas foram pH, condutividade elétrica e turbidez da água.

Struktur und Funktion des Lipoproteins von Nereis virens (Annelida)

Ein discoidales Lipoprotein aus dem Polychaeten Nereis virens (Annelida) wurde eingehend charakterisiert. Im Vordergrund standen dabei die transportierten Lipide, sowie die Ultrastruktur des Partikels. Das Nereis-Lipoprotein besitzt eine für Invertebraten atypische Lipidzusammensetzung: Außer den Phospholipiden gibt es keine klar dominierende Lipidklasse. Die Charakterisierung der Apolipoproteine zeigt Gemeinsamkeiten mit den Apolipophorinen der Insekten: Wie diese besitzt das Nereis-Lipoprotein zwei Apolipoproteine, die in einer 1:1-Stöchiometrie angeordnet sind. Das größere Protein (ApoNvLp I) ist dabei stärker zum wässrigen Medium exponiert ist als das kleinere (ApoNvLp II). Beide Proteinuntereinheiten sind N-glycosyliert. ApoNvLp II ist zusätzlich noch O-glycosyliert. Bei den Sekundärstrukturen dominieren β-Strukturen (35%) gegenüber α-Helices (14%); 28% waren ungeordnete Strukturen. Die Masse wurde mit verschiedenen Methoden bestimmt: sie liegt zwischen ~800 kDa (Gelfiltration) und ~860 kDa (Analytische Ultrazentrifugation). Der Sedimentationskoeffizient beträgt 9,7 S. Der zelluläre Lipoproteinrezeptor wurde aus einer großen Anzahl von Zellen und Geweben isoliert. Die biochemische Charakterisierung des Rezeptormoleküls zeigte es als ein monomeres, integrales, N- und O-glycosyliertes Membranprotein mit einer Masse von ~114 kDa. Die Bindungscharakteristika (Abhängigkeit von Ca2+, Disulfidbrücken) weisen es als Mitglied der LDLR-Superfamilie aus. In vitro-Inkubationsversuche mit fluoreszenzmarkierten Lipoproteinen zeigten die Aufnahme sowohl in Oocyten als auch in freie Coelomzellen (Elaeocyten) sowie in Spermatogonien- und Tetradenstadien. Auffällig war, dass die Lipide zusammen mit den Apolipoproteinen in die Dottergranula der Eizellen eingelagert wurden und nicht direkt in die Lipidtropfen. Auch bei den Elaeocyten wurden die Lipide nicht direkt in den Lipidtropfen eingelagert. Intakte Lipoproteine konnten per Dichtegradienten-Ultrazentrifugation nur aus Spermatogonien isoliert werden. Die isolierten Lipoproteine hatten die gleiche ‚Morphologie’ wie die aus der Coelomflüssigkeit isolierten, zeigten jedoch sehr viele Peptidfragmente im SDS-Gel, was auf eine beginnende Degradation hinweist. Es wird ein Modell für den Lipidtransport in Nereis virens vorgeschlagen, bei dem den Elaeocyten eine entscheidende Rolle im Lipidstoffwechsel zufällt.

Abiotic parameters and abundances, dominance and diversity of benthic macro- and meiofauna in Kongsfjord, Spitsbergen

The intertidal and subtidal soft bottom macro- and meiofauna of a glacier fjord on Spitsbergen was studied after complete ice melt in June 2003. The abundances of the benthic fauna were within the range reported from estuaries and similar intertidal areas of boreal regions. The high proportion of juveniles in the eulittoral zone indicated larval recruitment from subtidal areas. The macrobenthic fauna can be divided into an intertidal and a subtidal community, both being numerically dominated by annelids. Deposit feeders were numerically predominant in intertidal sites, whereas suspension feeders were most abundant in the subtidal area. Among the meiofauna, only the benthic copepods were identified to species, revealing ecological adaptations typical for intertidal species elsewhere.