150 resultados para 28S


Relevância:

10.00% 10.00%

Publicador:

Resumo:

Restriction maps of rDNA repeats of five species of Colobinae and three outgroup taxa, Hylobates leucogenys, Macaca mulatta, and Macaca irus, were constructed using 15 restriction endonucleases and cloned 18S and 28S rRNA gene probes. The site variation between Rhinopithecus roxellana and Rhinopithecus bieti is comparable to that between Presbytis francoisi and Presbytis phayrei, implying that R. bieti is a valid species rather than a subspecies of R. roxellana. Phylogenetic analysis on the 47 informative sites supports the case for Rhinopithecus being an independent genus and closely related to Presbytis. Furthermore, branch lengths of the tree seem to support the hypothesis that the leaf monkeys share some ancestral traits as well as some automorphic characters.

Relevância:

10.00% 10.00%

Publicador:

Resumo:

用15种限制性内切酶和人28S、18S rDNA探针构建了懒猴属各物种核糖体DNA重复单位的限制性内切酶图谱。在进化速率较高的非转录间隔区, 在大、中、小獭猴中分别定位了23、24、24个酶切位点。结果表明, 懒猴属内似只有两个有效物种, 即大懒猴和小懒猴, 中懒猴与小懒猴的分化至多到半种级别。

Relevância:

10.00% 10.00%

Publicador:

Resumo:

以人28S,18S DNA为探针,用15种限制性内切酶构建了猕猴属6个种(M.mulatta、M.facsicularis、M.arctoides、M.assamensis、M.thibetana、M.nemestrina)和滇金丝猴(Rhinopithecus bieti),白颊长臂猿(Hylobates leucogenys)核糖体DNA重复单位的限制性内切酶图谱。红面猴(M.arctoides)与熊猴(M.assamensis)拥有完全相同的限制性内切酶图谱。基于内切酶图谱得到了68个信息位点并计算了各种rDNA重复型间的遗传距离。用PHYLIP version 3.5c软件包中的NEIGHBOR和RESTML程序,以滇金丝猴和白颊长臂猿为外群,构建了NJ树和最大似然树。两棵树的拓扑结构不完全一致,但恒河猴( (M.mulatta)和食蟹猴(M.facsicularis)总是位于树的基部。熊猴-红面猴(M.assamensis-M.arctoides)虽然与藏猴(M.thibetana)共享的限制性位点数更多,在NJ树上两类动物也最为接近,但在最大似然树中熊猴-红面猴却与平顶猴(M.nemestrina)聚在一起。因此,rDNA变异的数据尚不能对猕猴类动物进行有效的分组。

Relevância:

10.00% 10.00%

Publicador:

Resumo:

The genetic diversity and phylogeny of 26 isolates of Bursaphelenchus xlophilus from China, Japan, Portugal and North America were investigated based on the D2/3 domain of 28S rDNA, nuclear ribosomal Internal Transcribed Spacer (ITS) sequences, and random amplified polymorphic DNA (RAPD) analysis. The genetic diversity analysis showed that the D2/3 domain of 28S rDNA of isolates of B. xlophilus from China, Portugal, Japan and the US were identical and differed at one to three nucleotides compared to those from Canada. ITS sequences of isolates from China and Portugal were the same; they differed at one or two nucleotides compared to those of Japanese isolates and at four and 23 nucleotides compared to those front the US and Canada, respectively. The phylogenetic analysis indicated that Chinese isolates share a common ancestor with one of the two Japanese clades and that the Canadian isolates form a sister group of the clade comprised of isolates from China, Portugal,Japan, and the US. The relationship between Japanese isolates and those from China was closer than with the American isolates. The Canadian isolates were the basal group of B. xylophilus. This suggests that B. xlophilus originated in North America and that the B. xylphilus that occurs in China could have been first introduced from Japan. Further analysis based on RAPD analysis revealed that the relationship among isolates from Guangdong, Zhejiang, Shandong, Anhui provinces and Nanjing was the closest, which suggests that pine wilt disease in these Chinese locales was probably dispersed from Nanjing, where this disease first occurred in China.

Relevância:

10.00% 10.00%

Publicador:

Resumo:

Partial (DNA) sequences were examined for one nuclear (28S rRNA gene) and one mitochondrial (16S rRNA) locus for nine species of pomatiopsid snail (Gastropoda: Rissooidea: Pomatiopsidae) from south-east Asia and south-west China. Fresh field samples were

Relevância:

10.00% 10.00%

Publicador:

Resumo:

Scleractinian coral species harbour communities of photosynthetic taxa of the genus Symbiodinium. As many as eight genetic clades (A, B, C, D, E, F, G and H) of Symbiodinium have been discovered using molecular biology. These clades may differ from each other in their physiology, and thus influence the ecological distribution and resilience of their host corals to environmental stresses. Corals of the Persian Gulf are normally subject to extreme environmental conditions including high salinity and seasonal variation in temperature. This study is the first to use molecular techniques to identify the Symbiodinium of the Iranian coral reefs to the level of phylogenetic clades. Samples of eight coral species were collected at two different depths from the eastern part of Kish Island in the northern Persian Gulf. Partial 28S nuclear ribosomal (nr) DNA of Symbiodinium (D1/D2 domains) were amplified by Polymerase Chain Reaction (PCR). PCR products were analyzed using Single Stranded Conformational Polymorphism (SSCP) and phylogenetic analyses of the LSU DNA sequences from a subset of the samples. The results showed that Symbiodinium populations were generally uniform among and within the populations of 8 coral species studied, and there are at least two clades of Symbiodinium from Kish Island. Clade D was detected from 8 of the coral species while clade C90 was found in 2 of species only (one species hosted two clades simultaneously). The dominance of clade D might be explained by high temperatures or the extreme temperature variation, typical of the Persian Gulf.

Relevância:

10.00% 10.00%

Publicador:

Resumo:

简要评述了生物膜研究的发展过程、目前状况及发展方向,介绍了生物膜的一些基本性质和理论。采用电化学方法对平板双层磷脂膜(BLMs),支撑磷脂膜(SPM)以及磷脂泡囊(liposom)等不同模拟膜系统进行了研究,并结合AFM、STM以及CD等谱学手段对蛋白质与生物膜之间的相互作用和蛋白质的结构变化进行了初步探索。在研究离子通道短杆菌肽D对一价离子的转移过程中发现短杆菌肽D的通道行为依赖于其在膜中的浓度,并且短杆菌肽D在膜中有形成聚集体的趋势。细胞色素c与中性磷脂没有作用,带负电荷的磷脂却可使细胞色素的三级结构松散,导致其电化学行为发生改变。多巴胺很容易嵌入浇铸在玻碳电极上的磷脂膜,并对NADH有很好的催化作用,使NADH的氧化电流增加了10倍,过电位降低了100mV。用原子力显微镜了DMPC在烷基化的疏水基底上成膜的动力学过程,自组装过程受吸附控制,其生长的一级反应速率常数大约22.15 ± 3.28S~(-1)M~(-1)。

Relevância:

10.00% 10.00%

Publicador:

Resumo:

Maize ribosome-inactivating protein (RIP) is a plant toxin that inactivates eukaryotic ribosomes by depurinating a specific adenine residue at the a-sarcin/ricin loop of 28S rRNA. Maize RIP is first produced as a proenzyme with a 25-amino acid internal inactivation region on the protein surface. During germination, proteolytic removal of this internal inactivation region generates the active heterodimeric maize RIP with full N-glycosidase activity. This naturally occurring switch-on mechanism provides an opportunity for targeting the cytotoxin to pathogen-infected cells. Here, we report the addition of HIV-1 protease recognition sequences to the internal inactivation region and the activation of the maize RIP variants by HIV-1 protease in vitro and in HIV-infected cells. Among the variants generated, two were cleaved efficiently by HIV-1 protease. The HIV-1 protease-activated variants showed enhanced N-glycosidase activity in vivo as compared to their un-activated counterparts. They also possessed potent inhibitory effect on p24 antigen production in human T cells infected by two HIV-1 strains. This switch-on strategy for activating the enzymatic activity of maize RIP in target cells provides a platform for combating pathogens with a specific protease.

Relevância:

10.00% 10.00%

Publicador:

Resumo:

典型的真核生物有四种rRNA(18S、5.8S、28S和5SrRNA)。一般18S、5.8S和28S的基因分别由转录间隔区(ITS)隔开而位于同一个转录单位上构成一个rRNA基因拷贝,多个rRNA基因拷贝串联形成rDNA。rDNA聚集在一起构成核仁组织区(NOR),成为核仁发生的位置。5SrRNA基因除在少数真核生物(如:酵母)中是和18S、28S rRNA基因位于同一个转录单位上外,一般是处在核仁以外的区域。贾第虫一度被认为是现存最原始的真核生物。支持这一观点的一个重要证据之一就是它还不具核仁结构。那么它的rDNA与典型真核生物的相比会有怎样的特点呢?本文在基因组的水平上对贾第虫的rDNA进行了全面调查分析,并对5S rRNA及其相关蛋白进行重点研究,得到如下结果和结论: 1)贾第虫的18S rRNA(1448bp)基因和28S rRNA(2300bp)基因比其他一些真核生物的(一般为1800bp和3400bp)要小的多,甚至比一些原核生物的相应的rRNA基因还要小。不仅如此,其5.8S rRNA基因和28SrRNA基因之间的转录间隔区(ITS2)比典型真核生物的对应区域也要短得多(只有54bp),且GC含量较高。结构预测表明该间隔区不能形成在许多真核生物中所能形成的保守的二级结构。更特别的是,贾第虫基因组中的rRNA基因序列大部分都是不完整的,并且不按照18S-5.8S-28S rRNA基因顺序排列,也没有多个完整拷贝顺序排列的区域。这提示贾第虫rRNA基因可能是以一种不同于典型真核生物的方式聚集的。因此本文认为以上这些特点可能与贾第虫不能形成典型核仁结构有关。 2)本文从贾第虫基因组中鉴定出了5S rRNA基因,并实验验证了其表达及其完整基因序列所编码的5S rRNA具有典型真核生物的T型二级结构,且具有绝大多数保守位点。RT-PCR表明该基因具有转录活性。该结果否定了前人的贾第虫没有5S rRNA的实验结果。并表明贾第虫尽管很原始,但其5S rRNA基因仍然是独立存在的和单独转录的。贾第虫基因组中总共有8个5S rRNA基因拷贝(且其中还有一个拷贝具有15个bp的异常插入)这大大低于一般真核生物的拷贝数。这些5S rRNA基因也不形成串联排列的区域。 我们还在贾第虫中鉴定出在真核生物中唯一与5S rRNA接触的核糖体蛋白L5蛋白并验证了其表达,该序列与其他真核生物的L5蛋白相似性很高,这提示贾第虫在5S rRNA基因转录出核后与L5蛋白结合形成5S RNP的过程可能与典型的真核生物是一致的。此外,我们从贾第虫中鉴定不出符合典型真核生物TFIIIA因子特征的蛋白,这提示贾第虫5S rRNA的转录起始以及转录后出核的机制可能与典型真核生物不同。过去对贾第虫的研究表明高等真核生物里RNA聚合酶III所独有的四个亚基在贾第虫中找不到同源物,而这样不完整的RNA聚合酶III已经可以在贾第虫中完成5S rRNA的转录了,这表明RNA聚合酶III所独有的这些亚基可能是为了完成其他功能而进化出来的。

Relevância:

10.00% 10.00%

Publicador:

Resumo:

RNA isolation is difficult in some plants and algae because phenolics, polysaccharides, or other compounds can bind or co-precipitate with RNA, and because the success of RNA isolation can be strain-specific and species-specific. To create an improved RNA isolation protocol for Laminaria japonica Aresch (Laminariaceae, Phaeophyta), four methods for extracting RNA were tested. A cetyltrimethylammonium bromide (CTAB)-based RNA extraction protocol was developed that clearly showed 28S and 18S ribosomal RNA bands and produced RNA with high yield (68 mu g g(-1) fresh weight) and high quality (A (260/280) ratio 1.96 +/- 0.05). The isolated RNA was intact, and RT-PCR analysis confirmed that further molecular application is feasible.

Relevância:

10.00% 10.00%

Publicador:

Resumo:

To develop genetic and physical maps for shrimp, accurate information on the actual number of chromosomes and a large number of genetic markers is needed. Previous reports have shown two different chromosome numbers for the Pacific whiteleg shrimp, Penaeus vannamei, the most important penaeid shrimp species cultured in the Western hemisphere. Preliminary results obtained by direct sequencing of clones from a Sau3A-digested genomic library of P. vannamei ovary identified a large number of (TAACC/GGTTA)-containing SSRs. The objectives of this study were to (1) examine the frequency of (TAACC)(n) repeats in 662 P. vannamei genomic clones that were directly sequenced, and perform homology searches of these clones, (2) confirm the number of chromosomes in testis of P. vannamei, and (3) localize the TAACC repeats in P. vannamei chromosome spreads using fluorescence in situ hybridization (FISH). Results for objective I showed that 395 out of the 662 clones sequenced contained single or multiple SSRs with three or more repeat motifs, 199 of which contained variable tandem repeats of the pentanucleotide (TAACC/GGTTA),, with 3 to 14 copies per sequence. The frequency of (TAACC)n repeats in P. vannamei is 4.68 kb for SSRs with five or more repeat motifs. Sequence comparisons using the BLASTN nonredundant and expressed sequence tag (EST) databases indicated that most of the TAACC-containing clones were similar to either the core pentanucleotide repeat in PVPENTREP locus (GenBank accession no. X82619) or portions of 28S rRNA. Transposable elements (transposase for Tn1000 and reverse transcriptase family members), hypothetical or unnamed protein products, and genes of known function such as 18S and 28S rRNAs, heat shock protein 70, and thrombospondin were identified in non-TAACC-containing clones. For objective 2, the meiotic chromosome number of P. vannamei was confirmed as N = 44. For objective 3, four FISH probes (P1 to P4) containing different numbers of TAACC repeats produced positive signals on telomeres of P. vannamei chromosomes. A few chromosomes had positive signals interstitially. Probe signal strength and chromosome coverage differed in the general order of P1 > P2 > P3 > P4, which correlated with the length of TAACC repeats within the probes: 83, 66, 35, and 30 bp, respectively, suggesting that the TAACC repeats, and not the flanking sequences, produced the TAACC signals at chromosome ends and TAACC is likely the telomere sequence for P. vannamei.

Relevância:

10.00% 10.00%

Publicador:

Resumo:

本研究应用显带技术和荧光原位杂交(Fluorescence in situ hybridization,FISH)技术,鉴定了牡蛎的染色体;应用FISH方法定位了一系列的重复序列和大分子的P1克隆DNA;制备了染色体特异性探针。应用FISH特异性探针成功地鉴定了长牡蛎的三体10。结果如下:1.分析了G带和C带在美洲牡蛎染色体上的分布。G带在每一条染色体上的带型不同,某些染色体间(如第1对和第4对染色体,第7对和第9对染色体)的带型差别不是很明显。G带型容易受染色体收缩程度的影响。C带型重复性较好,染色体带型较清楚,分布在染色体的端粒区域和着丝粒区域。G带和C带带型能够用来鉴定牡蛎的染色体,但是重复性低和带型差异不显著,并不适合常规的染色体鉴定。2.早期胚胎和担轮幼虫制备的染色体适合于FISH分析。染色体制备方法重复性好,可适用于其它贝类的染色体制备。3.研究了重复序列基因--rDNA的定位:1)18S-5.8S rDNA在研究的五种巨蛎属Crassostrea牡蛎均只有一个位 点。太平洋种(C.gigas,C. ariakensis和C. plicatula)中,杂交信号位于最短的染色体一第10对染色体长臂的端粒区域,在大西洋种(C. virginica和C. rhizophorae)中,同一序列定位在第2对染色体短臂的端粒区域。2)18S-28S rDNA在两种蛤中有两个位点。rDNA探针定位在侏儒蛤(Mulinis Lateralis)的第15对和第19对染色体的端粒区域,同一序列定位在硬壳蛤(Mercenaria mercenaria)的第10对染色体的长臂和第12对染色体短臂的端粒区域。信号强度在两对染色体之间有差异。 3)5s rDNA位于美洲牡蛎的第5对染色体的短臂上靠近着丝粒区域和第6 对染色体的短臂的中间区域。信号强度在两对染色体之间没有显著差异。5S rDNA探针可以作为鉴定和识别第5对和第6对染色体的特异性探针。4.研究了一些重复序列的定位1)两个短的重复序列1G8,1P2均产生很强的荧光信号分布在美洲牡蛎所有的染色体上。在低严谨条件下,这些序列均产生很强的信号散布在所有的染色体上。在高严谨条件下,信号强度大大减弱,但是信号仍散布在所有的染色体上。这些重复序列散布在美洲牡蛎的整个基因组中。2)高度重复序列Cgl70产生的信号分布在长牡蛎的7对染色体的着丝粒区域,没有发现间区信号。在第1对,第2对,第4对和第7对染色体上的荧光信号强且稳定。在第5对,第8对和第10对染色体上的信号相对弱且不稳定。在剩余的染色体上(第3对,第6对和第9对染色体)没有检测到荧光信号。结果表明此卫星序列是一个着丝粒卫星序列。在美洲牡蛎的染色体上没有检测到荧光信号,表明了这个着丝粒卫星序列在这两种牡蛎中的分布存在着显著的差异。3)脊椎动物端粒序列(TTAGGG)n的FISH信号局限在四种双壳贝类(美洲牡蛎,the mangrove oyster,硬壳蛤,侏儒蛤)所有染色体的端粒区域,没有发现间区信号的存在。研究结果与已报道的研究结果表明脊椎动物端粒序列或许存在于所有双壳贝类的染色体末端。双壳贝类是目前研究过的唯一含有脊椎动物端粒序列DNA的无脊椎动物。4)研究了RAPD探针在美洲牡蛎染色体上的定位。大多数RAPD探针产生了多个信号散布在间期细胞核和所有的染色体上。引物OPX-03,OPX-04,OPX—06,OPG-02,OPM—04,OPM-11,0PS-02制备的探针在适宜的条件下产生特异性荧光 信号,分布在牡蛎的特定的染色体上。PCR特异性带产生的探针OPX—06—310和0PG-02—300产生了特异性的荧光信号:OPX—06—310产生的信号位于第5对染色体的短臂的近端粒区域,0PG—02—300探针定位到第3对染色体的短臂上。这两个探针是鉴定美洲牡蛎单条染色体的特异性探针。5.研究了大分子Pl克隆DNA(插入片断为80~100 kb)在美洲牡蛎染色体上的定位。Pl克隆DNA通过切口平移方法标记digoxigenin—11-dUTP用作FISH的探针。Cot-1 DNA作为竞争剂有效地抑制了Pl克隆序列中的重复序列产生的信号。杂交信号用fluorescein标记的anti—digoxigenin抗体来检测,用两层抗体rabbit-anti-sheep抗体和FITC anti—rabbit抗体来扩增信号。9个P1探针成功地定位在特定的染色体上。46—1探针杂交到第1对染色体的长臂靠近着丝粒区域;47-10探针定位到第2对染色体的长臂近端粒区域;Cvpl和48-13两探针定位到第3对染色体上:Cvpl位于短臂的端粒区域,48-13探针位于长臂的近着丝粒区域;48—10探针杂交到第4对染色体的长臂上;48-1探针杂交到第5对染色体长臂的近着丝粒区域;49-11探针位于第7对染色体长臂上;探针49-10和44-11位于第8对染色体长臂上。同时我们成功地将2个P1探针杂交到同一染色体分裂相中,进一步确定了Pl探针在美洲牡蛎染色体 上的定位。6.应用18S-28S rDNA探针成功地鉴定出长牡蛎非整倍体中的三体10。经鉴定AF-35,AF-39和AF-3三体家系属于三体10家系。rDNA探针分布在三条染色体上,即多出的一条染色体为染色体10。相应地在间期细胞核上有三个信号出现。AF-34和AF-36家系不属于三体10家系。rDNA探针分布在两条染色体上,相应地在间期细胞核上有两个信号出现。FISH和染色体特异性探针为非整倍体的鉴定提供了一个快速准确可靠的方法和途径。

Relevância:

10.00% 10.00%

Publicador:

Resumo:

Chromosomal location of the 5S ribosomal RNA gene was studied in the eastern oyster, Crassostrea virginica Gmelin. using fluorescence in situ hybridization (FISH). Metaphase chromosomes were obtained from early embryos, and the FISH probe was made by PCR (polymerase chain reaction) amplification of the 5S rRNA gene and labeled by incorporation of digoxigenin-1 1-dUTP during PCR. Hybridization was detected with fluorescein-labeled antidigoxigenin antibodies. Two pairs of FISH signals were observed on metaphase chromosomes. Karyotypic analysis showed that the 5S rRNA gene cluster is interstitially located on short arms of chromosomes 5 and 6. On chromosome 5, the 5S rRNA genes were located immediately next to the centromere, whereas on chromosome 6, they were located approximately half way between the telomere and the centromere. Chromosomes of C. virginica are difficult to identify because of their similarities in size and arm ratio, and the chromosomal location of 5S rRNA genes provides unambiguous identification of chromosomes 5 and 6. Previous studies have mapped the major rRNA gene cluster (18S-5.8S-28S) to chromosome 2. and this study shows that the 5S rRNA gene cluster is not linked to the major rRNA genes and duplicated during evolution.

Relevância:

10.00% 10.00%

Publicador:

Resumo:

Karyotype and chromosomal localization of major (18-5.8-28S) and minor (5S) ribosomal RNA genes were studied in two species of Pectinidae, zhikong (Chlamys farreri) and bay (Argopecten irradians irradians) scallops. using fluorescence in situ hybridization (FISH). C. farreri had a haploid number of 19 with a karyotype of 3m + 4sm + 7sm-st + 4st + 1st-t, and A. i. irradians had a haploid number of 16 with a karyotype of 5st + 11t. In C. farreri, the major and minor rRNA genes had one locus each and were mapped to the same chromosome-Chromosome 5. In A. i. irradians, the major rRNA genes had two loci, located on Chromosomes 4 and 8, and the 5S rRNA gene was found at a third chromosome-Chromosome 10. Results of this and other studies indicate that karyotype of A. i. irradians (n = 16, 21 arms) is secondary and derived from an ancestral karyotype similar to that of C. farreri (n = 19, 38 arms) through considerable chromosomal loss and rearrangements. The ability to tolerate significant chromosomal loss suggests that the modal karyotype of Pectinidae and possibly other bivalves with a haploid number of 19 is likely tetraploid; i.e., at least one genome duplication has occurred during the evolution of Bivalvia.

Relevância:

10.00% 10.00%

Publicador:

Resumo:

The jinjiang oyster Crassostrea rivularis [Gould, 1861. Descriptions of Shells collected in the North Pacific Exploring Expedition under Captains Ringgold and Rodgers. Proc. Boston Soc. Nat. Hist. 8 (April) 33-40] is one of the most important and best-known oysters in China. Based on the color of its flesh, two forms of C rivularis are recognized and referred to as the "white meat" and 11 red meat" oysters. The classification of white and red forms of this species has been a subject of confusion and debate in China. To clarify the taxonomic status of the two forms of C. rivularis, we collected and analyzed oysters from five locations along China's coast using both morphological characters and DNA sequences from mitochondrial 16S rRNA and cytochrome oxidase 1, and the nuclear 28S rRNA genes. Oysters were classified as white or red forms according to their morphological characteristics and then subjected to DNA sequencing. Both morphological and DNA sequence data suggest that the red and white oysters are two separate species. Phylogenetic analysis of DNA sequences obtained in this study and existing sequences of reference species show that the red oyster is the same species as C. ariakensis Wakiya [1929. Japanese food oysters. Jpn. J. Zool. 2, 359-367.], albeit the red oysters from north and south China are genetically distinctive. The white oyster is the same species as a newly described species from Hong Kong, C. hongkongensis Lam and Morton [2003. Mitochondrial DNA and identification of a new species of Crassostrea (Bivalvia: Ostreidae) cultured for centuries in the Pearl River Delta, Hong Kong, China. Aqua. 228, 1-13]. Although the name C. rivularis has seniority over C. ariakensis and C. hongkongensis, the original description of Ostrea rivularis by Gould [1861] does not fit shell characteristics of either the red or the white oysters. We propose that the name of C. rivularis Gould [1861] should be suspended, the red oyster should take the name C. ariakensis, and the white oyster should take the name C. hongkongensis. (C) 2004 Elsevier B.V. All rights reserved.