Ultra-deep sequencing provides insights into the virology of hepatitis C super-infections in a case of three sequential infections with different genotypes

The current epidemic of Hepatitis C infection in HIV-positive men who have sex with men is associated with increasing use of recreational drugs. Multiple HCV infections have been reported in haemophiliacs and intravenous drug users. Using ultra-deep sequencing analysis, we present the case of an HIV-positive MSM with evidence of three sequential HCV infections, each occurring during the acute phase of the preceding infection, following risk exposures. We observed rapid replacement of the original strain by the incoming genotype at subsequent time points. The impact of HCV super-infection remains unclear and UDS may provide new insights.

Fourth Annual Symposium in Virology

What a pleasure it is to take part in welcoming you to this Fourth Annual Symposium in Virology. Such a tremendous program lies ahead! And how pleased and proud we are that this year's symposium is a special tribute to our colleague Dr. James Van Etten, Professor of Plant Pathology in our Institute of Agriculture and Natural Resources here at the University of Nebraska-Lincoln, who last-year was elected to membership in the National Academy of Sciences.

USEPA manual of methods for virology : chapter 13.

Chiefly tables.

Introduction to virology.

Mode of access: Internet.

The Cloud Computing and Computer Virology

Евгений Николов, Димитрина Полимирова - Докладът представя текущото състояние на “облачните изчисления” и “облачните информационни атаки” в светлината на компютърната вирусология и информационната сигурност. Обсъдени са категориите “облачни възможни информационни атаки” и “облачни успешни информационни атаки”. Коментирана е архитектурата на “облачните изчисления” и основните компоненти, които изграждат тяхната инфраструктура, съответно “клиенти” (“clients”), „центрове за съхранение на данни“ (“datacenters”) и „разпределени сървъри“ (“dirstributed servers”). Коментирани са и услугите, които се предлагат от “облачните изчисления” – SaaS, HaaS и PaaS. Посочени са предимствата и недостатъците на компонентите и услугите по отношение на “облачните информационни атаки”. Направен е анализ на текущото състояние на “облачните информационни атаки” на територията на България, Балканския полуостров и Югоизточна Европа по отношение на компонентите и на услугите. Резултатите са представени под формата на 3D графични обекти. На края са направени съответните изводи и препоръки под формата на заключение.

Sewage disposal and wildlife health in Antarctica

Sewage and its microbiology, treatment and disposal are important to the topic of Antarctic wildlife health because disposal of untreated sewage effluent into the Antarctic marine environment is both allowed and commonplace. Human sewage contains enteric bacteria as normal flora, and has the potential to contain parasites, bacteria and viruses which may prove pathogenic to Antarctic wildlife. Treatment can reduce levels of micro-organisms in sewage effluent, but is not a requirement of the Environmental Protocol to the Antarctic Treaty (the Madrid Protocol). In contrast, the deliberate release of non-native organisms for any other reason is prohibited. Hence, disposal of sewage effluent to the marine environment is the only activity routinely undertaken in Antarctica knowing that it will likely result in the release of large numbers of potentially non-native species. When the Madrid Protocol was negotiated, the decision to allow release of untreated sewage effluent was considered the only pragmatic option, as a prohibition would have been costly, and may not have been achievable by many Antarctic operators. In addition, at that time the potential for transmission of pathogens to wildlife from sewage was not emphasised as a significant potential risk. Since then, the transmission of disease-causing agents between species is more widely recognised and it is now timely to consider the risks of continued discharge of sewage effluent in Antarctica and whether there are practical alternatives.

Human papillomavirus DNA detected in peripheral blood samples from healthy Australian male blood donors

Recent studies have shown that human papillomavirus (HPV) DNA can be found in circulating blood, including peripheral blood mononuclear cells (PBMCs), sera, plasma, and arterial cord blood. In light of these findings, DNA extracted from PBMCs from healthy blood donors were examined in order to determine how common HPV DNA is in blood of healthy individuals. Blood samples were collected from 180 healthy male blood donors (18-76 years old) through the Australian Red Cross Blood Services. Genomic DNA was extracted and specimens were tested for HPV DNA by PCR using a broad range primer pair. Positive samples were HPV-type determined by cloning and sequencing. HPV DNA was found in 8.3% (15/180) of the blood donors. A wide variety of different HPV types were isolated from the PBMCs; belonging to the cutaneous beta and gamma papillomavirus genera and mucosal alpha papillomaviruses. High-risk HPV types that are linked to cancer development were detected in 1.7% (3/180) of the PBMCs. Blood was also collected from a healthy HPV-positive 44-year-old male on four different occasions in order to determine which blood cell fractions harbor HPV. PBMCs treated with trypsin were negative for HPV, while non-trypsinized PBMCs were HPV-positive. This suggests that the HPV in blood is attached to the outside of blood cells via a protein-containing moiety. HPV was also isolated in the B cells, dendritic cells, NK cells, and neutrophils. To conclude, HPV present in PBMCs could represent a reservoir of virus and a potential new route of transmission.