Aboveground community and species-specific plant biomass from the Jena Experiment (Dominance Experiment, year 2007)

This data set contains aboveground community plant biomass (Sown plant community, Weed plant community, Dead plant material, and Unidentified plant material; all measured in biomass as dry weight) and species-specific biomass from the sown species of the dominance experiment plots of a large grassland biodiversity experiment (the Jena Experiment; see further details below). In the dominance experiment, 206 grassland plots of 3.5 x 3.5 m were established from a pool of 9 plant species that can be dominant in semi-natural grassland communities of the study region. In May 2002, varying numbers of plant species from this species pool were sown into the plots to create a gradient of plant species richness (1, 2, 3, 4, 6, and 9 species). Plots were maintained by bi-annual weeding and mowing. Aboveground community biomass was harvested twice in May and August 2007 on all experimental plots of the dominance experiment. This was done by clipping the vegetation at 3 cm above ground in two rectangles of 0.2 x 0.5 m per experimental plot. The location of these rectangles was assigned by random selection of coordinates within the central area of the plots (excluding an outer edge of 50cm). The positions of the rectangles within plots were identical for all plots. The harvested biomass was sorted into categories: individual species for the sown plant species, weed plant species (species not sown at the particular plot), detached dead plant material, and remaining plant material that could not be assigned to any category. All biomass was dried to constant weight (70°C, >= 48 h) and weighed. Sown plant community biomass was calculated as the sum of the biomass of the individual sown species. The mean of both samples per plot and the individual measurements are provided in the data file. Overall, analyses of the community biomass data have identified species richness and the presence of particular species as an important driver of a positive biodiversity-productivity relationship.

Aboveground community and species-specific plant biomass from the Jena Experiment (Dominance Experiment, time series since 2002)

This data set comprises a time series of aboveground community plant biomass (Sown plant community, Weed plant community, Dead plant material, and Unidentified plant material; all measured in biomass as dry weight) and species-specific biomass from the sown species of the dominance experiment plots of a large grassland biodiversity experiment (the Jena Experiment; see further details below). In the dominance experiment, 206 grassland plots of 3.5 x 3.5 m were established from a pool of 9 species that can be dominant in semi-natural grassland communities of the study region. In May 2002, varying numbers of plant species from this species pool were sown into the plots to create a gradient of plant species richness (1, 2, 3, 4, 6, and 9 species). Plots were maintained by bi-annual weeding and mowing. Aboveground community biomass was harvested twice a year, generally in May and August (in 2002 only once in September) on all experimental plots of the dominance experiment. This was done by clipping the vegetation at 3 cm above ground in two rectangles of 0.2 x 0.5 m per experimental plot. The location of these rectangles was assigned by random selection of new coordinates every year within the central area of the plots (excluding an outer edge of 50cm). The positions of the rectangles within plots were identical for all plots. The harvested biomass was sorted into categories: individual species for the sown plant species, weed plant species (species not sown at the particular plot), detached dead plant material, and remaining plant material that could not be assigned to any category. Biomass was dried to constant weight (70°C, >= 48 h) and weighed. Sown plant community biomass was calculated as the sum of the biomass of the individual sown species. The mean of both samples per plot and the individual measurements are provided in the data file. Overall, analyses of the community biomass data have identified species richness and the presence of particular species as an important driver of a positive biodiversity-productivity relationship.

Species-specific consequences of ocean acidification for the calcareous tropical green algae Halimeda, 2011

Ocean acidification (OA), resulting from increasing dissolved carbon dioxide (CO2) in surface waters, is likely to affect many marine organisms, particularly those that calcify. Recent OA studies have demonstrated negative and/or differential effects of reduced pH on growth, development, calcification and physiology, but most of these have focused on taxa other than calcareous benthic macroalgae. Here we investigate the potential effects of OA on one of the most common coral reef macroalgal genera,Halimeda. Species of Halimeda produce a large proportion of the sand in the tropics and are a major contributor to framework development on reefs because of their rapid calcium carbonate production and high turnover rates. On Palmyra Atoll in the central Pacific, we conducted a manipulative bubbling experiment to investigate the potential effects of OA on growth, calcification and photophysiology of 2 species of Halimeda. Our results suggest that Halimeda is highly susceptible to reduced pH and aragonite saturation state but the magnitude of these effects is species specific. H. opuntiasuffered net dissolution and 15% reduction in photosynthetic capacity, while H. taenicola did not calcify but did not alter photophysiology in experimental treatments. The disparate responses of these species to elevated CO2 partial -pressure (pCO2) may be due to anatomical and physiological differences and could represent a shift in their relative dominance in the face of OA. The ability for a species to exert biological control over calcification and the species specific role of the carbonate skeleton may have important implications for the potential effects of OA on ecological function in the future.

Aboveground community and species-specific plant biomass from the Jena Experiment (Main Experiment, year 2008)

This data set contains aboveground community biomass (Sown plant community, Weed plant community, Dead plant material, and Unidentified plant material; all measured in biomass as dry weight) and species-specific biomass from the sown species of the main experiment plots of a large grassland biodiversity experiment (the Jena Experiment; see further details below). In the main experiment, 82 grassland plots of 20 x 20 m were established from a pool of 60 species belonging to four functional groups (grasses, legumes, tall and small herbs). In May 2002, varying numbers of plant species from this species pool were sown into the plots to create a gradient of plant species richness (1, 2, 4, 8, 16 and 60 species) and functional richness (1, 2, 3, 4 functional groups). Plots were maintained by bi-annual weeding and mowing. Aboveground community biomass was harvested twice in 2008 just prior to mowing (during peak standing biomass in early June and in late August) on all experimental plots of the main experiment. This was done by clipping the vegetation at 3 cm above ground in three rectangles of 0.2 x 0.5 m per large plot. The location of these rectangles was assigned prior to each harvest by random selection of coordinates within the core area of the plots (i.e. the central 10 x 15 m). The positions of the rectangles within plots were identical for all plots. The harvested biomass was sorted into categories: individual species for the sown plant species, weed plant species (species not sown at the particular plot), detached dead plant material (i.e., dead plant material in the data file), and remaining plant material that could not be assigned to any category (i.e., unidentified plant material in the data file). All biomass was dried to constant weight (70°C, >= 48 h) and weighed. Sown plant community biomass was calculated as the sum of the biomass of the individual sown species. The data for individual samples and the mean over samples for the biomass measures on the community level are given. Overall, analyses of the community biomass data have identified species richness as well as functional group composition as important drivers of a positive biodiversity-productivity relationship.

Aboveground community and species-specific plant biomass from the Jena Experiment (Dominance Experiment, year 2002)

This data set contains aboveground community biomass (Sown plant community, Weed plant community, and Unidentified plant material; all measured in biomass as dry weight) and species-specific biomass from the sown species of the dominance experiment plots of a large grassland biodiversity experiment (the Jena Experiment; see further details below). In the dominance experiment, 206 grassland plots of 3.5 x 3.5 m were established from a pool of 9 plant species that can be dominant in semi-natural grassland communities of the study region. In May 2002, varying numbers of plant species from this species pool were sown into the plots to create a gradient of plant species richness (1, 2, 3, 4, 6, and 9 species). Plots were maintained by bi-annual weeding and mowing. Aboveground community biomass was harvested in September 2002 on all experimental plots of the dominance experiment. This was done by clipping the vegetation at 3 cm above ground in two rectangles of 0.2 x 0.5 m per experimental plot. The location of these rectangles was assigned by random selection of coordinates within the central area of the plots (excluding an outer edge of 50cm). The positions of the rectangles within plots were identical for all plots. The harvested biomass was sorted into categories: individual species for the sown plant species, weed plant species (species not sown at the particular plot), detached dead plant material, and remaining plant material that could not be assigned to any category. The fresh mass of all biomass was determined and only biomass of one sample per plot could be dried to constant weight (70°C, >= 48 h). Dry mass of the other sample was calculated from the ratio of fresh to dry mass. Sown plant community biomass was calculated as the sum of the biomass of the individual sown species. The mean of both samples per plot and the individual measurements are provided in the data file. Overall, analyses of the community biomass data have identified species richness and the presence of particular species as an important driver of a positive biodiversity-productivity relationship.

Aboveground community and species-specific plant biomass from the Jena Experiment (Dominance Experiment, year 2004)

This data set contains aboveground community plant biomass (Sown plant community, Weed plant community, Dead plant material, and Unidentified plant material; all measured in biomass as dry weight) and species-specific biomass from the sown species of the dominance experiment plots of a large grassland biodiversity experiment (the Jena Experiment; see further details below). In the dominance experiment, 206 grassland plots of 3.5 x 3.5 m were established from a pool of 9 plant species that can be dominant in semi-natural grassland communities of the study region. In May 2002, varying numbers of plant species from this species pool were sown into the plots to create a gradient of plant species richness (1, 2, 3, 4, 6, and 9 species). Plots were maintained by bi-annual weeding and mowing. Aboveground community biomass was harvested twice in May and August 2004 on all experimental plots of the dominance experiment. This was done by clipping the vegetation at 3 cm above ground in two rectangles of 0.2 x 0.5 m per experimental plot. The location of these rectangles was assigned by random selection of coordinates within the central area of the plots (excluding an outer edge of 50cm). The positions of the rectangles within plots were identical for all plots. The harvested biomass was sorted into categories: individual species for the sown plant species, weed plant species (species not sown at the particular plot), detached dead plant material, and remaining plant material that could not be assigned to any category. All biomass was dried to constant weight (70°C, >= 48 h) and weighed. Sown plant community biomass was calculated as the sum of the biomass of the individual sown species. The mean of both samples per plot and the individual measurements are provided in the data file. Overall, analyses of the community biomass data have identified species richness and the presence of particular species as an important driver of a positive biodiversity-productivity relationship.

Aboveground community and species-specific plant biomass from the Jena Experiment (Dominance Experiment, year 2005)

This data set contains aboveground community plant biomass (Sown plant community, Weed plant community, Dead plant material, and Unidentified plant material; all measured in biomass as dry weight) and species-specific biomass from the sown species of the dominance experiment plots of a large grassland biodiversity experiment (the Jena Experiment; see further details below). In the dominance experiment, 206 grassland plots of 3.5 x 3.5 m were established from a pool of 9 plant species that can be dominant in semi-natural grassland communities of the study region. In May 2002, varying numbers of plant species from this species pool were sown into the plots to create a gradient of plant species richness (1, 2, 3, 4, 6, and 9 species). Plots were maintained by bi-annual weeding and mowing. Aboveground community biomass was harvested twice in May and August 2005 on all experimental plots of the dominance experiment. This was done by clipping the vegetation at 3 cm above ground in two rectangles of 0.2 x 0.5 m per experimental plot. The location of these rectangles was assigned by random selection of coordinates within the central area of the plots (excluding an outer edge of 50cm). The positions of the rectangles within plots were identical for all plots. The harvested biomass was sorted into categories: individual species for the sown plant species, weed plant species (species not sown at the particular plot), detached dead plant material, and remaining plant material that could not be assigned to any category. All biomass was dried to constant weight (70°C, >= 48 h) and weighed. Sown plant community biomass was calculated as the sum of the biomass of the individual sown species. The mean of both samples per plot and the individual measurements are provided in the data file. Overall, analyses of the community biomass data have identified species richness and the presence of particular species as an important driver of a positive biodiversity-productivity relationship.

Effect of hen age, egg weight and storage system on physical properties of egg from white-egg laying hens

A total of 72 eggs from a group of 100 white laying hens housed in standard cages were analyzed. Thirty-six eggs were retired when the hens had 44 week of age and the other 36 eggs were retired eight weeks afterwards. Each group of 36 eggs was radomly divided in three groups of 12 eggs. First group was analyzed at once (storage system C); second one was kept during one week in the refrigerator (5ºC) (storage system R), and third group were kept also one week but on ambient temperature (25ºC) (storage system ET). The hen age, egg weight and storage system had not significant (P>0.05) effect on shell thickness. The specific gravity (SG) has a positive relation with shell quality. The egg class and storage system significantly (P<0,05) affected to SG, while no influence of bird age on this variable was observed. The yolk color increased with hen age but storage system had not effect on this variable. The increase of the hen age and the R and AT storage systems significantly (P<0.05) reduced albumen height (H) and the interaction hen age x storage system was significant (P<0.025) for this variable. The reduction of the H due to R and ET storage systems was higher in the eggs from hens with 52 weeks of age than in those from hens with 44 weeks of age. The Haugh units (HU) was significantly (P<0.05) affected by hen age, egg class and storage system. The hen age increase reduced HU and the R and ET eggs had lower HU than C eggs. It is concluded that the bird age and storage system with high temperatures reduced the egg quality.

Allocation of 14C assimilated in late spring to tissue and biochemical stem components of cork oak (Quercus suber L.) over the seasons

Carbon distribution in the stem of 2-year-old cork oak plants was studied by 14CO2 pulse labeling in late spring in order to trace the allocation of photoassimilates to tissue and biochemical stem components of cork oak. The fate of 14C photoassimilated carbon was followed during two periods: the first 72 h (short-term study) and the first 52 weeks (long-term study) after the 14CO2 photosynthetic assimilation. The results showed that 14C allocation to stem tissues was dependent on the time passed since photoassimilation and on the season of the year. In the first 3 h all 14C was found in the polar extractives. After 3 h, it started to be allocated to other stem fractions. In 1 day, 14C was allocated mostly to vascular cambium and, to a lesser extent, to primary phloem; no presence of 14C was recorded for the periderm. However, translocation of 14C to phellem was observed from 1 week after 14CO2 pulse labeling. The phellogen was not completely active in its entire circumference at labeling, unlike the vascular cambium; this was the tissue that accumulated most photoassimilated 14C at the earliest sampling. The fraction of leaf-assimilated 14C that was used by the stem peaked at 57% 1 week after 14CO2 plant exposure. The time lag between C photoassimilation and suberin accumulation was ∼8 h, but the most active period for suberin accumulation was between 3 and 7 days. Suberin, which represented only 1.77% of the stem weight, acted as a highly effective sink for the carbon photoassimilated in late spring since suberin specific radioactivity was much higher than for any other stem component as early as only 1 week after 14C plant labeling. This trend was maintained throughout the whole experiment. The examination of microautoradiographs taken over 1 year provided a new method for quantifying xylem growth. Using this approach it was found that there was more secondary xylem growth in late spring than in other times of the year, because the calculated average cell division time was much shorter.

Zone design of specific sizes using adaptive additively weighted voronoi diagrams

Territory or zone design processes entail partitioning a geographic space, organized as a set of areal units, into different regions or zones according to a specific set of criteria that are dependent on the application context. In most cases, the aim is to create zones of approximately equal sizes (zones with equal numbers of inhabitants, same average sales, etc.). However, some of the new applications that have emerged, particularly in the context of sustainable development policies, are aimed at defining zones of a predetermined, though not necessarily similar, size. In addition, the zones should be built around a given set of seeds. This type of partitioning has not been sufficiently researched; therefore, there are no known approaches for automated zone delimitation. This study proposes a new method based on a discrete version of the adaptive additively weighted Voronoi diagram that makes it possible to partition a two-dimensional space into zones of specific sizes, taking both the position and the weight of each seed into account. The method consists of repeatedly solving a traditional additively weighted Voronoi diagram, so that each seed?s weight is updated at every iteration. The zones are geographically connected using a metric based on the shortest path. Tests conducted on the extensive farming system of three municipalities in Castile-La Mancha (Spain) have established that the proposed heuristic procedure is valid for solving this type of partitioning problem. Nevertheless, these tests confirmed that the given seed position determines the spatial configuration the method must solve and this may have a great impact on the resulting partition.

Respuesta fisiológica y agronómica del olivar en seto (cv. Arbequina) a la orientación de filas y al ancho de calle: relación entre la producción y calidad del aceite y la radiación interceptada

En las últimas dos décadas, los productores han plantado olivares en seto para lograr la mecanización de la poda y en especial de la cosecha, reducir los costes de mano de obra y permitir intervenciones de manejo rápidas y oportunas. Los olivares se desarrollaron en ausencia del conocimiento científico, sobre el diseño óptimo de la estructura de la copa, necesario para incrementar la producción y calidad del aceite. En contraste, con los árboles muy espaciados y distribuidos uniformemente de las plantaciones tradicionales, en el olivar en seto hay una marcada variabilidad espacial y temporal de la radiación disponible en función del diseño de la plantación. Así, conocer la respuesta fisiológica y productiva del olivo a la radiación resulta fundamental en el olivar en seto. La orientación de las filas y el ancho de calle son aspectos que se deciden en el diseño de las plantaciones en seto. Ambos aspectos modifican la radiación interceptada por la canopia y, por lo tanto, pueden incidir en la productividad y calidad del aceite. Una vez realizada la plantación no pueden ser modificados, y así las ventajas o desventajas permanecerán fijas durante toda la vida productiva del olivar. A pesar de esto, el impacto de la orientación de las filas y el ancho de calle han recibido poca atención en olivos y en la mayoría de los frutales conducidos en seto. Por todo ello, los objetivos principales de esta tesis fueron, (i) evaluar el efecto de la orientación del seto y del ancho de calle, sobre la productividad y calidad del aceite, (ii) evaluar un modelo que estime la radiación dentro de la canopia. Este modelo permitirá cuantificar las relaciones entre la radiación y los componentes del rendimiento y calidad del aceite de olivares en setos con un amplio rango de estructuras y (iii) conocer la variabilidad en las características de las hojas (morfológicas y fisiológicas) y de los tejidos del fruto (tamaño y composición) en diferentes posiciones de la copa de los setos. Para ello, se dispuso de 3 ensayos de olivar en seto (cv. Arbequina) implantados en 2008 en el municipio de La Puebla de Montalbán, Toledo. La primera cosecha fue en 2010 y a partir del 2012 los setos formaron una copa continua. A partir de ese año, los setos se mantuvieron mediante poda, con similar ancho (~1 m) y altura (~2,5 m), acordes a las dimensiones de la cosechadora vendimiadora. En los años 2012 y 2013 se estudió en profundidad la respuesta de las plantas de estos ensayos. En el ensayo 1, los setos fueron plantados con cuatro orientaciones de filas: N–S, NE–SO, NO–SE y E–O y el mismo ancho de calle (4 m). En los otros dos ensayos, los setos fueron plantados con tres anchos de calle (5,0, 4,0 y 2,5 m), y con filas orientadas N–S (ensayo 2) y E–O (ensayo 3). La respuesta de la orientación de las filas se evaluó a nivel de seto y de estratos del seto (alturas y caras), a través de mediciones del crecimiento de brotes, componentes reproductivos, características y temperatura del fruto, estado hídrico del suelo y de las plantas, fotosíntesis neta de las hojas y contenido de ácidos grasos. Los setos orientados NE–SO (2,7 t/ha) lograron la mayor producción de aceite, que fue significativamente más alta que la de los setos E–O (2,3 t/ha). La producción de aceite de los setos E–O no se diferenció estadísticamente de los setos N–S (2,5 t/ha). Las diferencias productivas entre orientaciones fueron explicadas por el número de frutos en cosecha, a su vez la variación en el número de frutos estuvo asociada al efecto de la orientación de las filas sobre el número de yemas desarrolladas y el porcentaje de inflorescencias fértiles. Las hojas en las caras iluminadas de los setos NE–SO y N–S presentaron mayor tasa fotosintética a la mañana (~10.0 h) que los setos E–O, en el año 2012, pero no en 2013. La orientación de las filas no tuvo un efecto significativo en el contenido de ácidos grasos de los aceites extraídos, esto ocurrió a pesar de variaciones en la temperatura interna de los frutos (3 °C) y de la radiación (40%) entre las distintas caras de los setos. La orientación del seto afectó significativamente al contenido relativo de agua del suelo, donde setos E–O presentaron valores más altos (12%) que setos N–S durante el verano y otoño. Sin embargo, el potencial hídrico de tallo fue similar entre orientaciones. En los ensayos 2 y 3, se evaluó el efecto que produce, a nivel de seto y de estratos (caras y alturas), reducir el ancho de calle de 5,0 a 4,0 y 2,5 m, en un seto orientado N–S y otro E–O, respectivamente. La relación entre altura/ancho de calle libre aumentó 0,6 a 0,8 y 1,6, al reducir 5,0, 4,0 y 2,5 m el ancho de calle, mientras la longitud de seto y el volumen de copa por hectárea incrementó 100% al reducir de 5,0 a 2,5 m, el ancho de calle. En los setos orientados N–S, la producción de aceite por ha acumulada en 4 campañas, incrementó significativamente un 52 %, al reducir de 5,0 a 2,5 m el ancho de calle. Los setos N–S con calle más estrecha (2,5 m) tuvieron un 19% menos frutos que los setos con calle más ancha (5,0 m) y a su vez el 60% de los mismos se localizaron los estratos altos de la canopia de los setos con calles estrecha en comparación al 40% en setos con calle de 5,0 m. En los estratos más bajos de los setos con calles de 2,5m hubo menor crecimiento de los brotes y los frutos tuvieron menor peso seco, contenido de aceite y madurez, que los frutos en los estratos bajos de los setos a 5,0 m. Los componentes del rendimiento y características de los frutos (agua y madurez) fueron similares entre la caras E y O, independientemente del ancho de calle. En los setos orientados E–O, la producción de aceite por ha acumulada en 4 campañas, no respondió significativamente al ancho de calle, debido a una disminución significativa en el número de frutos y producción de aceite por m de seto, al reducir de 5,0 a 2,5 m, el ancho de calle. En los setos orientados E–O, con calles de 5,0 m, los frutos presentaron similar peso seco, contenido de aceite y agua, en las caras S y N, sin embargo, cuando la calle fue reducida a 2,5, los frutos de la cara S fueron más pesado y maduros que en la cara N. Independientemente del ancho de calle y de la orientación del seto, el aceite presentó mayor contenido de ácidos palmitoleico, palmítico, esteárico y linoleico en los frutos del estrato más alto de la canopia disminuyendo hacia la base. En contraste, el contenido de ácido oleico aumentó desde el estrato más alto hacia la base de los setos. Las diferencias en el contenido de ácidos grasos entre la parte alta y baja de los setos, incrementó al reducir el ancho de calle en los setos N–S, pero no en los E-O. En conclusión, en olivares en seto, reducir el ancho de calle permite incrementar la producción de aceite, en setos orientados N–S, pero no en E–O. Un modelo que estima la cantidad y distribución de la radiación en toda la copa del seto, fue utilizado para estimar la radiación interceptada en distintos estratos del seto. El modelo requiere un valor del coeficiente de extinción (k) para estimar la transmisión de radiación a través de la copa, el cual fue obtenido experimentalmente (k=1,2). Utilizando los datos del ensayo 1, un único modelo lineal relacionó el peso seco y el rendimiento graso de setos con la radiación interceptada por los distintos estratos de setos con cuatro orientaciones de filas. La densidad de frutos fue también relacionada con la radiación, pero más débilmente. En los setos orientados N–S, plantados con tres anchos de calles, (ensayo 2) el contenido de ácidos palmitoleico y linoleico del aceite incrementó linealmente con el incremento de la radiación interceptada, mientras el contenido ácido oleico disminuyó linealmente con el incremento de la radiación. El contenido de ácidos grasos del aceite no estuvo relacionado con la radiación interceptada en setos orientados E–O (Ensayo 3). En los setos N–S y E–O, plantados con anchos de calle de 2,5 m, se estudiaron las interacciones entre la radiación y características de las hojas, número de fruto, tamaño y composición de los frutos a nivel de órgano, tejido y células. Independientemente de la orientación del seto, el área y el contenido de clorofila de las hojas incrementaron significativamente en los estratos más bajos de los setos. Mientras, las hojas de los estratos medios del seto presentaron mayor capacidad fotosintética que en los estratos bajos y alto de los setos. Los estratos del seto que interceptaron más radiación produjeron frutos con mayor tamaño y contenido de aceite en el mesocarpo, sin efectos sobre el tamaño y composición del endocarpo. A nivel celular, los frutos expuestos a mayor nivel de radiación desarrollaron en el mesocarpo células de mayor tamaño en comparación a frutos menos expuestos, mientras el número de células no fue afectado. Adicionalmente, el número y tamaño de las células estuvo relacionado con la composición del mesocarpo en términos de aceite, agua y peso seco menos aceite. Esta tesis, contribuye, desde una perspectiva integral del cultivo del olivo, a cuantificar el impacto de la orientación y ancho de calle sobre la producción y calidad del aceite en olivares conducidos en setos. El análisis y discusión de la relación entre la radiación y los componentes del rendimiento y calidad del aceite, puede ayudar a diseñar plantaciones en seto con dimensiones óptimas para la intercepción de la radiación. ABSTRACT In the last two decades, olive hedgerow system has been established by commercial growers to allow continuous mechanized pruning and especially harvest, reduce costs of manual labour and allow more rapid and timely management interventions. The adoption of hedgerow was done in the absence of adequate scientific knowledge of the impact of this orchard structure and associated mechanization on tree response, yield and quality, after centuries in low-density orchards and open-formed trees. The row orientation and width alley are fundamental aspects in the hedgerow design and have been scarcely studied in olive. Both aspects modify the radiation intercepted by the canopy, and consequently the productivity and oil quality, and once defined in orchard planting cannot be changed, so advantages and disadvantages remain fixed for the lifespan of the orchard. The main objectives of this thesis were to (i) evaluate the impact of the row orientation and width alley on productivity and oil quality by the measurements of profile of the determining processes of shoot growth, fruit temperature, yield components and fruit and oil characteristics on opposite sides of olive hedgerows. Additionally, the effect of row orientation on the plant water status was also evaluated; (ii) evaluate a mathematical model for estimating the radiation within the canopy and quantify the relationships between the radiation estimated and yield components and oil quality in olive hedgerows under wide range of structures and; (iii) determine the variability in the characteristics of the leaves (morphological and physiological) and fruit tissues (size and composition) in different positions of the hedgerows canopy. Three plots of olive hedgerows (cv. Arbequina) planted in 2008 in La Puebla de Montalbán, Toledo were evaluated during the 2012 and 2013 seasons. The hedgerows were maintained by lateral pruning and topping with the same width (1 m) and height (2.5 m) compatible with the intended harvester. In a plot (experiment 1), the hedgerows were planted with the same width alley (4 m) and four row orientations: N–S, NE–SW, NW–SE and E–W. Other two plots (Experiments 2 and 3) separated by approximately 100 m were planted with N–S and E–O oriented rows and three alley widths in each orientation: 5.0, 4.0 and 2.5 m. In the exp. 1, maximum fruit yield were achieved by NE–SW and NW–SW (15.7 t/ha). Of these, NE–SW achieved the highest oil yield (2.7 t/ha). There were no differences in fruit or oil yield between N–S (2.5 t oil/ha) and E–W (2.3 t oil/ha) orientations. Fruit number was the most important component to explain these differences, by previous influence on number of bud developed and percentage of fertile inflorescences. Fruit maturity and oil quality on both sides of the hedgerows were not affected by row orientation. This occurred despite significant variations in the internal fruit temperature, which was closely related to the irradiance received by the canopy and the time of day. Additionally, row orientation significantly affected the relative water content of the soil, where E–W oriented hedgerows showed consistently higher values than N–S during summer-autumn season. The stem water potential at midday, however, was similar between orientations, revealing possible lower water consumption of E–W than N–S oriented hedgerows. In the exp. 2, regardless of row orientation, reduction of row spacing from 5.0 to 4.0 and 2.5 m increases the ratio of canopy depth to free alley width (Al/An) from 0.6 to 0.8 and 1.6, respectively, and ads 25 and 100 % more hedgerow length per ha. In N–S oriented hedgerows, oil production per ha increased significantly by 14 and 52 % in 4.0 m and 2.5 m relative to 5.0 m row spacing, the effect being proportionally less than the increase in hedgerow length per ha. Hedgerows spaced 2.5 m with Al/An = 1.6 produced relatively fewer fruits per unit length than did wider spacings and were preferentially distributed in upper layers. Fruits located at the bottom of the canopy were smaller, with lower oil content and were less mature. In E–W oriented hedgerows, oil production per ha did not respond significantly to row spacing, despite the doubling of row length from the 5.0 to the 2.5 m row spacing. The explanation was found in fewer fruit per unit length of hedgerow and smaller oil content at 2.5 m than 5.0 m row spacing, averaged over the experimental period. In E–W hedgerows spaced at 5.0 m with Al/An = 0.6, the vertical profiles of fruit characteristics (mass, oil and water contents, and maturity) were similar between opposing sides, but at 4.0 m (Al/An= 0.8) and 2.5 m (Al/An=1.6) spacings, fruits on the S side were heavier and more mature than on N side. The oil extracted from fruits harvested at different heights of N–S and E–W oriented hedgerows showed higher palmitoleic, palmitic, stearic and linoleic contents at the canopy top decreasing toward base. The oleic content was reverse, increased from top to base. In N–S hedgerows, vertical gradients increased by reducing the alley width, but not in the E–W oriented hedgerows. The simulation of internal canopy irradiance was related in a single relationship (R2 = 0.63) to the vertical profiles of fruit weight and oil content of olive hedgerows with wide range of structures. The density of fruits was also associated with the irradiance but more weakly (R2 = 0.27), and revealed a more complex response involving changes in the vegetative structure by canopy management (topping) and the effect of radiation on the previous sequence that defines the number of fruits. The vertical profiles of oil quality traits were closely associated to canopy irradiance, but only when the N–S oriented hedgerows were considered. The contents of palmitoleic and linoleic acid in the oil increased linearly when intercepted irradiance increased from 9 to 19 mol PAR/m2. In contrast, oleic content decreased linearly in this irradiance range. Additionally, we advanced knowledge regarding the interactions among irradiance and leaf, fruit number, size and composition at organ-, tissue- and cellular- levels. The irradiance received at different positions in the canopy strongly affected the leaf area and chlorophyll content, and mesocarp size and composition (water and oil), without effects on endocarp size and composition. At the cellular level, light-exposed fruit developed larger mesocarp cells than shaded fruits, but cell number was not affected. Our results indicate that cell number and size are related to mesocarp composition in term of oil, water, and dry weight menus oil, although the specific manner in which they interact remains to be determined. This research contributes from an integral perspective of olive growing to quantify the impact of row orientation and width alley on productivity and oil quality in hedgerows systems. The analysis and discussion of the relationships between radiation and yield components and oil quality can help understand the impact of design olive hedgerows in general and in a wide range of environmental conditions.

C1A Cysteine protease-cystatin interactions in leaf senescence

Senescence-associated proteolysis in plants is a crucial process to relocalize nutrients from leaves to growing or storage tissues. The massive net degradation of proteins involves broad metabolic networks, different subcellular compartments, and several types of proteases and regulators. C1A cysteine proteases, grouped as cathepsin L-, B-, H-, and F-like according to their gene structures and phylogenetic relationships, are the most abundant enzymes responsible for the proteolytic activity during leaf senescence. Besides, cystatins as specific modulators of C1A peptidase activities exert a complex regulatory role in this physiological process. This overview article covers the most recent information on C1A proteases in leaf senescence in different plant species. Particularly, it is focussed on barley, as the unique species where the whole gene family members of C1A cysteine proteases and cystatins have been analysed.

Rhizobium leguminosarum HupE is a highly-specific diffusion facilitator for nickel uptake

Bacteria require nickel transporters for the synthesis of Ni-containing metalloenzymes in natural, low nickel habitats. In this work we carry out functional and topological characterization of Rhizobium leguminosarum HupE, a nickel permease required for the provision of this element for [NiFe] hydrogenase synthesis. Expression studies in the Escherichia coli nikABCDE mutant strain HYD723 revealed that HupE is a medium-affinity permease (apparent Km 227 ! 21 nM; Vmax 49 ! 21 pmol Ni2+ min"1 mg"1 bacterial dry weight) that functions as an energy-independent diffusion facilitator for the uptake of Ni(II) ions. This Ni2+ transport is not inhibited by similar cations such as Mn2+, Zn2+, or Co2+, but is blocked by Cu2+. Analysis of site-directed HupE mutants allowed the identification of several residues (H36, D42, H43, F69, E90, H130, and E133) that are essential for HupE-mediated Ni uptake in E. coli cells. By using translational fusions to reporter genes we demonstrated the presence of five transmembrane domains with a periplasmic N-terminal domain and a C-terminal domain buried in the lipid bilayer. The periplasmic N-terminal domain contributes to stability and functionality of the protein

The N-terminal 209-aa domain of high molecular- weight 4.1R isoforms abrogates 4.1R targeting to the nucleus

An extensive repertoire of protein 4.1R isoforms is predominantly generated by alternative pre-mRNA splicing and differential usage of two translation initiation sites. The usage of the most upstream ATG (ATG-1) generates isoforms containing N-terminal extensions of up to 209 aa compared with those translated from the downstream ATG (ATG-2). To characterize nonerythroid 4.1R proteins translated from ATG-1 and analyze their intracellular localization, we cloned 4.1R cDNAs containing this translation initiation site. Six different clones were isolated from the nucleated human MOLT-4 T-cell line by reverse transcriptase–PCR techniques. Transient expression of the six ATG-1-translated 4.1R isoforms tagged with a c-Myc epitope revealed that all of them predominantly distributed to the plasma membrane and the endoplasmic reticulum. Staining of MOLT-4 cell plasma membranes but not nuclei was also observed by immunofluorescence microscopy by using an antibody specific to the N-terminal extension. Consistent with this, the antibody reacted with a major endogenous protein of ≈145 kDa present in nonnuclear but absent from nuclear fractions prepared from MOLT-4 cells. Because these data suggested that ATG-1-translated 4.1R isoforms were predominantly excluded from the nucleus, we fused the 209-aa domain to nuclear 4.1R isoforms encoded from ATG-2 and observed that this domain inhibited their nuclear targeting. All these results indicate that the N-terminal domain of ATG-1-translated 4.1R isoforms plays a pivotal role in differential targeting of proteins 4.1R.

Biosynthetic control of molecular weight in the polymerization of the octasaccharide subunits of succinoglycan, a symbiotically important exopolysaccharide of Rhizobium meliloti

Succinoglycan, a symbiotically important exopolysaccharide of Rhizobium meliloti, is composed of polymerized octasaccharide subunits, each of which consists of one galactose and seven glucoses with succinyl, acetyl, and pyruvyl modifications. Production of specific low molecular weight forms of R. meliloti exported and surface polysaccharides, including succinoglycan, appears to be important for nodule invasion. In a previous study of the roles of the various exo gene products in succinoglycan biosynthesis, exoP, exoQ, and exoT mutants were found to synthesize undecaprenol-linked fully modified succinoglycan octasaccharide subunits, suggesting possible roles for their gene products in polymerization or transport. Using improved techniques for analyzing succinoglycan biosynthesis by these mutants, we have obtained evidence indicating that R. meliloti has genetically separable systems for the synthesis of high molecular weight succinoglycan and the synthesis of a specific class of low molecular weight oligosaccharides consisting of dimers and trimers of the octasaccharide subunit. Models to account for our unexpected findings are discussed. Possible roles for the ExoP, ExoQ, and ExoT proteins are compared and contrasted with roles that have been suggested on the basis of homologies to key proteins involved in the biosynthesis of O-antigens and of certain exported or capsular cell surface polysaccharides.