Detection of sandal spike phytoplasma using immunological and molecular techniques

Spike disease in sandal is generally diagnosed by the manifestation of external symptoms. Attempts have been made to detect the diseased plants by determining the length/breadth ratio of leaves (lyengar, 1961) and histochemical tests using Mann's stain (Parthasarathi et al., 1966), Dienes' stain (Ananthapadmanabha et a/., 1973) aniline blue and Hoechst 33258 (Ghosh et a/., 1985, Rangaswamy, 1995). But most of these techniques are insensitive, indirect detection methods leading to misinterpretation of results. Moreover, to identify disease resistant sandal trees, highly sensitive techniques are needed to detect the presence of the pathogen. In sandal forests, several host plants of sandal like Zizyphus oenop/ea (Fig. 1.3) also exhibit the yellows type disease symptoms. Immunological and molecular assays have to be developed to confirm the presence of sandal spike phytoplasma in such hosts. The major objectives of the present work includes:In situ detection of sandal spike phytoplasma by epifluorescence microscopy and scanning electron microscopy.,Purification of sandal spike phytoplasma and production of polyclonal antibodies.,Amino acid and total protein estimation of sandal spike phytoplasma.,Immunological detection of sandal spike phytoplasma., Molecular detection of sandal spike phytoplasma.,Screening for phytoplasma in host plants of spike disease affected sandal using immunological and molecular techniques.

Detergent compatible alkaline lipase produced by marine Bacillus smithii BTMS 11

Bacillus smithii BTMS 11, isolated from marine sediment, produced alkaline and thermostable lipase. The enzyme was purified to homogeneity by ammonium sulfate precipitation and ion exchange chromatography which resulted in 0.51 % final yield and a 4.33 fold of purification. The purified enzyme was found to have a specific activity of 360 IU/mg protein. SDS-PAGE analyses, under non-reducing and reducing conditions, yielded a single band of 45 kDa indicating the single polypeptide nature of the enzyme and zymogram analysis using methylumbelliferyl butyrate as substrate confirmed the lipolytic activity of the protein band. The enzyme was found to have 50 C and pH 8.0 as optimum conditions for maximal activity. However, the enzyme was active over wide range of temperatures (30–80 C) and pH (7.0–10.0). Effect of a number of metal salts, solvents, surfactants, and other typical enzyme inhibitors on lipase activity was studied to determine the novel characteristics of the enzyme. More than 90 % of the enzyme activity was observed even after 3 h of incubation in the presence of commercial detergents Surf, Sunlight, Ariel, Henko, Tide and Ujala indicating the detergent compatibility of B. smithii lipase. The enzyme was also found to be efficient in stain removal from cotton cloths. Further it was observed that the enzyme could catalyse ester synthesis between fatty acids of varying carbon chain lengths and methanol with high preference for medium to long chain fatty acids showing 70 % of esterification. Results of the study indicated scope for application of this marine bacterial lipase in various industries

Spezifität der quantitativen Resistenz von Blättern und Früchten der Tomate (Lycopersicon ssp. L.) gegenüber Phytophthora infestans (Mont.) de Bary.

Ziel der vorliegenden Arbeit war es, einen Beitrag zur Resistenzforschung bei Tomaten gegenüber P. infestans zu leisten, um erste Grundlagen für eine mögliche Züchtungsstrategie auf Basis unterschiedlicher quantitativer Resistenzen zu erarbeiten. Hierzu wurde untersucht, inwieweit unterschiedliche qualitative und quantitative Resistenzen bei Tomatenblättern und -früchten vorliegen, und ob hierfür verantwortliche Mechanismen identifiziert werden können. Zudem wurde untersucht, ob isolatspezifische quantitative Resistenzen identifiziert werden können. Zu diesem Zweck wurde mit einer erweiterten Clusteranalyse, basierend auf einer modifizierten Sanghvi-T2 Distanz, ein statistisches Verfahren entwickelt, welches die Identifikation von quantitativen, isolatspezifischen Resistenzen unter der Berücksichtigung der Variabilität ermöglicht. Des weiteren wurde geprüft, inwieweit zwischen den Resistenzausprägungen auf dem Blatt und den Resistenzausprägungen auf der Frucht ein Zusammenhang besteht und inwieweit die im Labor beobachteten Resistenzen unter Freilandbedingungen eine Rolle spielen. Im Labortest wurde die qualitative und quantitative Blattresistenz von 109 Akzessionen aus elf Lycopersicon und Solanum Arten gegenüber zwölf unterschiedlich aggressiven und teilweise auch unterschiedlich virulenten P. infestans Isolaten untersucht (Kap. 3). Die Früchte von 38 Tomatensorten wurden auf ihre Resistenz gegenüber drei P. infestans Isolaten geprüft. Zusätzlich wurde der Einfluss der Fruchtnachreife auf die Resistenzeigenschaften der Tomatenfrüchte gegenüber P. infestans analysiert (Kap. 4). Insgesamt 40 Sorten wurden auch unter Feldbedingungen auf Blatt- und Fruchtbefall untersucht (Kap. 5). Die frühen Stadien der Infektion von Tomatenblättern mit P. infestans Sporangien wurden mikroskopisch bei acht Tomatensorten mit unterschiedlichen quantitativen Reaktionsprofilen und drei Isolaten untersucht (Kap. 6). Hierzu wurden die Entwicklungsstadien von P. infestans Sporangien nach 24h, 48h und 60h nach der Inokulation auf und im Blatt mit der Calcofluor und der KOH - Anilin Blau Färbung sichtbar gemacht. Das Auftreten und die Lokalisation von H2O2 im Blatt nach 48h und 60h nach der Inokulation in Reaktion auf die Infektion wurde mithilfe einer DAB (3,3′ - Diaminobenzidine) Färbung untersucht. Es wurden einige, z.T. auch wahrscheinlich neue, qualitative Blattresistenzen gegenüber P. infestans gefunden, jedoch war keine der 109 Akzessionen vollständig resistent gegenüber allen Isolaten. Für die quantitative Resistenz von Blättern lagen in vielen Fällen isolatspezifische Unterschiede vor. Die Sorte x Isolat Interaktionen konnten mit Hilfe der erweiterten Clusteranalyse erfolgreich analysiert werden und die Akzessionen in Gruppen mit unterschiedlichen quantitativen Resistenzprofilen bzgl. der Interaktion mit den Isolaten und des Resistenzniveaus eingeteilt werden. Für die Fruchtresistenz konnten keine qualitativen Resistenzen gegenüber den drei getesteten Isolaten gefunden werden. Im Gegensatz dazu unterschieden sich die Tomatensorten in ihrer quantitativen Resistenz und Sorten und Isolate interagierten signifikant. Auch für die Fruchtresistenz konnten Gruppen mit unterschiedlichen quantitativen Reaktionsprofilen gebildet werden. Insgesamt nimmt die Anfälligkeit von Tomatenfrüchten mit zunehmender Reife kontinuierlich und signifikant ab. Unter Laborbedingungen korrelierten nur die Sporulationskapazität der Früchte und der prozentuale Blattbefall. Im Feldversuch über zwei Jahre und mit bis zu 40 Tomatensorten war der Zusammenhang hoch signifikant, jedoch asymptotisch, d.h. bereits bei sehr geringem Blattbefall war der Fruchtbefall sehr hoch. Bei den Tomatenherkünften, die sowohl im Labor als auch im Feld auf ihre Anfälligkeit getestet wurden, erschienen die Blattanfälligkeiten ähnlich, während kein klarer Zusammenhang zwischen der Fruchtanfälligkeit im Feld und im Labor bestand. Die Entwicklung von P. infestans auf der Blattoberfläche war unabhängig von der Sorte. Sowohl beim Eindringen und der Etablierung von P. infestans ins Blatt als auch bei der damit verbunden H2O2 Aktivität im Wirt wurden deutliche isolat- und sortenspezifische Effekte gefunden, die aber nur zum Teil mit den quantitativen Unterschieden der Blattresistenz korrespondierten. Sorten, die bei hoher Resistenz unterschiedliche Reaktionsprofile aufweisen, sind grundsätzlich interessante Kreuzungspartner, um die quantitative Resistenz gegenüber P. infestans zu verbessern. Hier sind vor allem Sorten, die sich auch in ihrer H2O2 Aktivität unterscheiden von Interesse.

Over Expression of the CMP-sialic Acid Transporter in Chinese Hamster Ovary Cells Leads to Increased Sialylation

Most glyco-engineering approaches used to improve quality of recombinant glycoproteins involve the manipulation of glycosyltransferase and/or glycosidase expression. We investigated whether the over expression of nucleotide sugar transporters, particularly the CMP-sialic acid transporter (CMP-SAT), would be a means to improve the sialylation process in CHO cells. We hypothesized that increasing the expression of the CMP-SAT in the cells would increase the transport of the CMP-sialic acid in the Golgi lumen, hence increasing the intra-lumenal CMP-sialic acid pool, and resulting in a possible increase in sialylation extent of proteins being produced. We report the construction of a CMP-SAT expression vector which was used for transfection into CHO-IFNγ, a CHO cell line producing human IFNγ. This resulted in approximately 2 to 5 times increase in total CMP-SAT expression in some of the positive clones as compared to untransfected CHO-IFNγ, as determined using real-time PCR analysis. This in turn concurred with a 9.6% to 16.3% percent increase in site sialylation. This engineering approach has thus been identified as a novel means of improving sialylation in recombinant glycoprotein therapeutics. This strategy can be utilized feasibly on its own, or in combination with existing sialylation improvement strategies. It is believed that such multi-prong approaches are required to effectively manipulate the complex sialylation process, so as to bring us closer to the goal of producing recombinant glycoproteins of high and consistent sialylation from mammalian cells.

Concordancia entre el gram y el cultivo del lavado broncoalveolar en pacientes con neumonía asociada al ventilador

La neumonía asociada a ventilador (NAV) es una entidad de incidencia creciente en cuidado intensivo con grandes dificultades en la estandarización de pruebas diagnósticas, generando altos costos en su manejo. Realizar un abordaje diagnóstico apropiado para cada institución y conocer la flora causante permite un mejor desenlace clínico y ahorro significativo para el sistema. Métodos diagnósticos sencillos como la tinción gram de muestras respiratorias son ampliamente usados para NAV, pero se observa variabilidad con el cultivo, prueba microbiológica definitiva. El objetivo de este estudio fue determinar el grado de acuerdo entre la tinción de gram inicial de una muestra de lavado broncoalveolar, con el resultado del cultivo. Se realizó muestreo consecutivo secuencial incluyendo los pacientes con diagnostico clínico de neumonía asociada a ventilador y que por protocolo institucional se llevaron a fibrobroncoscopia y lavado del cual se tomaron muestras para tinción de gram y cultivo de gérmenes comunes. Se realizó análisis de concordancia por índice kappa para determinar el acuerdo entre los resultados de la tinción de gram y el informe del cultivo. Adicionalmente se analizaron otras variables descriptivas de importancia. El indica kappa de 16,8% muestra mala concordancia entre el gram y el cultivo del lavado broncoalveolar, sin embargo, esto puede tener relación con el uso de antibióticos previo ocurrido en un 69%. Los diagnósticos mas frecuentes son sepsis y enfermedad neurológica, predominó la baja probabilidad clínica de neumonía; hay mayor trastorno de oxigenación el día de diagnostico de NAV. La mortalidad en UCI fue 27.5% y 29% al día 28.

El papel del modelo económico chaebol en la participación de Corea del Sur en la OCDE

La presente investigación busca dilucidar el papel del modelo económico del chaebol en la participación de Corea del Sur en la Organización para la Cooperación y el Desarrollo Económico OCDE. Las investigaciones en torno al modelo chaebol y sus privilegios en Corea del Sur no han sido enfocadas directamente hacia el ámbito internacional y la influencia que puede tener allí dicho modelo. La investigación busca demostrar que el éxito del modelo económico del chaebol sirvió como incentivo para su entrada y participación activa en la OCDE, consiguiendo de esta forma no solo el establecimiento de una cooperación económica con sus miembros, sino un prestigio y reconocimiento frente a la Comunidad Internacional. Para el desarrollo de esta investigación de tipo cualitativo, se utilizarán fuentes de segundo y tercer grado para llevar a cabo un análisis documental de textos, pertinente para su desarrollo.

Aproximación didáctica al método científico.

Recoge, en su primera parte, una panorámica de lo que ha significado el método científico en l a innovación didáctica, y establece relaciones entre el movimiento didáctico y los pensadores científicos. En la segunda parte sitúa aspectos básicos del método científico entre una aproximación al conocimiento y la aproximación del alumnado a la realidad observable. Plantea reflexiones didácticas y ejemplos de actividades. La tercera parte resume una experiencia didáctica realizada con estudiantes del Curso de Orientación Universitaria sobre el aparato de Golgi.

Glucosinolate-accumulating S-cells in Arabidopsis leaves and flower stalks undergo programmed cell death at early stages of differentiation

Plant secondary metabolites glucosinolates (GSL) have important functions in plant resistance to herbivores and pathogens. We identified all major GSL that are accumulated in S-cells in Arabidopsis by MALDI-TOF MS, and estimated by LC-MS that the total GSL concentration in these cells is above 130 mM. The precise locations of the S-cells outside phloem bundles in rosette and cauline leaves and in flower stalks were visualised using sulphur mapping by cryo-SEM/EDX. S-cells contain up to 40% of total sulphur in flower stalk tissues. S-cells in emerging flower stalks and developing leaf tissues show typical signs of Programmed Cell Death (PCD) or apoptosis, such as chromatin condensation in the nucleus and blebbing of the membranes. TUNEL staining for DNA double strand breaks confirmed PCD in S-cells in postmeristematic tissues in the flower stalk as well as in the leaf. Our results show that S-cells in postmeristematic tissues proceed to an extreme degree of metabolic specialisation besides PCD. Accumulation and maintenance of a high concentration of GSL in these cells are accompanied by degradation of a number of cell organelles. The substantial changes in the cell composition during S-cell differentiation indicate the importance of this particular GSL-based phloem defence system. The specific anatomy of the S-cells and ability to accumulate specialised secondary metabolites is similar to that of the non-articulated laticifer cells in latex plants and thus indicates a common evolutionary origin.

Unilateral incompatibility in Capsicum (Solanaceae): Occurrence and taxonomic distribution

Background and aims Unilateral incompatibility (UI) occurs when pollinations between species are successful in one direction but not in the other. Self-incompatible (SI) species frequently show UI with genetically related, self-compatible (SC) species, as pollen of SI species is compatible on the SC pistil, but not vice versa. Many examples of unilateral incompatibility, and all those which have been studied most intensively, are found in the Solanaceae, particularly Lycopersicon, Solanum, Nicotiana and Petunia. The genus Capsicum is evolutionarily somewhat distant from Lycopersicon and Solanum and even further removed from Nicotiana and Petunia. Unilateral incompatibility has also been reported in Capsicum; however, this is the first comprehensive study of crosses between all readily available species in the genus. Methods All readily available (wild and domesticated) species in the genus are used as plant material, including the three genera from the Capsicum pubescens complex plus eight other species. Pollinations were made on pot-grown plants in a glasshouse. The number of pistils pollinated per cross varied (from five to 40 pistils per plant), depending on the numbers of flowers available. Pistils were collected 24 h after pollination and fixed for 3-24 h. After staining, pistils were mounted in a drop of stain, squashed gently under a cover slip and examined microscopically under ultra-violet light for pollen tube growth. Key results Unilateral incompatibility is confirmed in the C. pubescens complex. Its direction conforms to that predominant in the Solanaceae and other families, i.e. pistils of self-incompatible species, or self-compatible taxa closely related to self-incompatible species, inhibit pollen tubes of self-compatible species. Conclusions Unilateral incompatibility in Capsicum does not seem to have arisen to prevent introgression of self-compatibility into self-incompatible taxa, but as a by-product of divergence of the C. pubescens complex from the remainder of the genus. (C) 2004 Annals of Botany Company.

Purification and electron cryomicroscopy of coronavirus particles

Intact, enveloped coronavirus particles vary widely in size and contour, and are thus refractory to study by traditional structural means such as X-ray crystallography. Electron microscopy (EM) overcomes some problems associated with particle variability and has been an important tool for investigating coronavirus ultrastructure. However, EM sample preparation requires that the specimen be dried onto a carbon support film before imaging, collapsing internal particle structure in the case of coronaviruses. Moreover, conventional EM achieves image contrast by immersing the specimen briefly in heavy-metal-containing stain, which reveals some features while obscuring others. Electron cryomicroscopy (cryo-EM) instead employs a porous support film, to which the specimen is adsorbed and flash-frozen. Specimens preserved in vitreous ice over holes in the support film can then be imaged without additional staining. Cryo-EM, coupled with single-particle image analysis techniques, makes it possible to examine the size, structure and arrangement of coronavirus structural components in fully hydrated, native virions. Two virus purification procedures are described.

The structure of echovirus type 12 bound to a two-domain fragment of its cellular attachment protein decay-accelerating factor (CD 55)

Echovirus type 12 (EV12), an enterovirus of the Picornaviridae family, uses the complement regulator, decay-accelerating factor (DAF, CD55) as a cellular receptor. We have calculated a three-dimensional reconstruction of EV12 bound to a fragment of DAF, consisting of short consensus repeat domains 3 and 4, from cryo-negative stain electron microscopy data (EMD #1057). This shows that, as for an earlier reconstruction of the related echovirus type 7 bound to DAF, attachment is not within the viral canyon but occurs close to the two-fold symmetry axes. Despite this general similarity, our reconstruction reveals a receptor interaction that is quite different from that observed for EV7. Fitting of the crystallographic co-ordinates for DAF34 and EV11 into the reconstruction shows a close agreement between the crystal structure of the receptor fragment and the density for the virus-bound receptor, allowing unambiguous positioning of the receptor with respect to the virion (PDB #1UPN). Our finding that the mode of virus-receptor interaction in EV12 is distinct from that seen for EV7 raises interesting questions regarding the evolution and biological significance of the DAF-binding phenotype in these viruses.

Towards the automatic reconstruction of dendritic trees using particle filters

The 3D reconstruction of a Golgi-stained dendritic tree from a serial stack of images captured with a transmitted light bright-field microscope is investigated. Modifications to the bootstrap filter are discussed such that the tree structure may be estimated recursively as a series of connected segments. The tracking performance of the bootstrap particle filter is compared against Differential Evolution, an evolutionary global optimisation method, both in terms of robustness and accuracy. It is found that the particle filtering approach is significantly more robust and accurate for the data considered.

Self-assembly of a modified amyloid peptide fragment: pH-responsiveness and nematic phase formation

The self-assembly of peptide YYKLVFFC based on a fragment of the amyloid beta (A) peptide, A beta 16-20, KLVFF has been studied in aqueous solution. The peptide is designed with multiple functional residues to examine the interplay between aromatic interactions and charge on the self-assembly, as well as specific transformations such as the pH-induced phenol-phenolate transition of the tyrosine residue. Circular dichroism (CD) and Fourier-transform infrared (FTIR) spectroscopies are used to investigate the conditions for beta-sheet self-assembly and the role of aromatic interactions in the CD spectrum as a function of pH and concentration. The formation of well-defined fibrils at pH 4.7 is confirmed by cryo-TEM (transmission electron microscope) and negative stain TEM. The morphology changes at higher pH, and aggregates of short twisted fibrils are observed at pH 11. Polarized optical microscopy shows birefringence at a low concentration (1 wt.-%) of YYKLVFFC in aqueous solution, and small-angle X-ray scattering was used to probe nematic phase formation in more detail. A pH-induced transition from nematic to isotropic phases is observed on increasing pH that appears to be correlated to a reduction in aggregate anisotropy upon increasing pH.

Effects of a novel galactooligosaccharide on the faecal microbiota of healthy and inflammatory bowel disease cats during a randomized, double-blind, cross-over feeding study

Inflammatory bowel disease (IBD) is a common gastrointestinal disorder of cats with no known aetiological agent. Previous work has suggested that the faecal microbiota of IBD cats is significantly different from that of healthy cats, including significantly lower bifidobacteria, bacteroides and total counts in IBD cats and significantly lower levels of sulfate-reducing bacteria in healthy cats. Prebiotics, including galactooligosaccharides (GOS), have been shown to elicit a bifidogenic effect in humans and other animals. The purpose of the current study was to examine the impact of a novel GOS supplementation on the faecal microbiota of healthy and IBD cats during a randomized, double-blind, cross-over feeding study. Eight oligonucleotide probes targeting specific bacterial populations and DAPI stain (total bacteria) were used to monitor the feline faecal microbiota. Overall, inter-animal variation was high; while a trend of increased bifidobacterial levels was seen with GOS supplementation it was not statistically significant in either healthy or IBD cats. No significant differences were observed in the faecal microbiota of IBD cats and healthy cats fed the same diet. Members of the family Coriobacteriaceae (Atopobium cluster) were found to be the most abundant bacteria in the feline microbiota.

Phase separated structures in tethered dPS–PMMA copolymer films revealed using X-ray scattering with a novel contrast enhancement agent

Tethered deuterated polystyrene-block-polymethyl methacrylate films have been examined by X-ray scattering both in their native state and following treatment with ruthenium tetroxide. The use of the stain, while increasing the thickness of the films, does not significantly alter the lateral structure or periodicity of the films and provides contrast between the two blocks. Both the periodicity of the films and the structure normal to the surface have been identified following staining. Experiments were also performed on films treated by a solvent exchange process, and the effects of staining on these films are discussed.