BLID: an Application of Logical Information Systems in Bioinformatics

Ferr?, S. and King, R. D. (2004) BLID: an Application of Logical Information Systems in Bioinformatics. In P. Eklund (editor), 2nd International Conference on Formal Concept Analysis (ICFCA), Feb 2004. LNCS 2961, Springer.

Application of Inductive Logic Programming to Structure-Based Drug Design

Enot, D. and King, R. D. (2003) Application of Inductive Logic Programming to Structure-Based Drug Design. 7th European Conference on Principles and Practice of Knowledge Discovery in Databases (PKDD '03). Springer LNAI 2838 p156-167

An Empirical Study of the Use of Relevance Information in Inductive Logic Programming

Srinivasan, A., King, R. D. and Bain, M.E. (2003) An Empirical Study of the Use of Relevance Information in Inductive Logic Programming. Journal of Machine Learning Research. 4(Jul):369-383

Statistical Evaluation of the Predictive Toxicology Challenge 2000-2001

Toivonen, H., Srinivasan, A., King, R. D., Kramer, S. and Helma, C. (2003) Statistical Evaluation of the Predictive Toxicology Challenge 2000-2001. Bioinformatics 19: 1183-1193

Structure based drug design with inductive logic programming

David P. Enot and Ross D. King (2003). Structure based drug design with inductive logic programming. The ACS National Meeting Spring 2003, New Orleans

The use of Inductive Logic Programming in drug design

David P. Enot and Ross D. King (2002) The use of Inductive Logic Programming in drug design. Proceedings of the 14th EuroQSAR Symposium (EuroQSAR 2002). Blackwell Publishing, p247-250

Application of metabolomics to plant genotype discrimination using statistics and machine learning

Janet Taylor, Ross D King, Thomas Altmann and Oliver Fiehn (2002). Application of metabolomics to plant genotype discrimination using statistics and machine learning. 1st European Conference on Computational Biology (ECCB). (published as a journal supplement in Bioinformatics 18: S241-S248).

How well do we understand the clusters found in microarray data?

Clare, A. and King R.D. (2002) How well do we understand the clusters found in microarray data? In In Silico Biol. 2, 0046

Machine learning of functional class from phenotype data

Clare, A. and King R.D. (2002) Machine learning of functional class from phenotype data. Bioinformatics 18(1) 160-166

Learning Qualitative Models in the Presence of Noise

G. M. Coghill, S. M. Garrett and R. D. King (2002), Learning Qualitative Models in the Presence of Noise, QR'02 Workshop on Qualitative Reasoning

Homology Induction: the use of machine learning to improve sequence similarity searches

Karwath, A. King, R. Homology induction: the use of machine learning to improve sequence similarity searches. BMC Bioinformatics. 23rd April 2002. 3:11 Additional File Describes the title organims species declaration in one string [http://www.biomedcentral.com/content/supplementary/1471- 2105-3-11-S1.doc] Sponsorship: Andreas Karwath and Ross D. King were supported by the EPSRC grant GR/L62849.

An ontology for a Robot Scientist

Soldatova, L., Clare, A., Sparkes, A. and King, R. D. (2006) An ontology for a robot scientist. Bioinformatics 2006 22: 464-471

ART: An ontology based tool for the translation of papers into Semantic Web format

To be presented at SIG/ISMB07 ontology workshop: http://bio-ontologies.org.uk/index.php To be published in BMC Bioinformatics. Sponsorship: JISC

Overhauling the PDB

Schierz, A.C., L. Soldatova, R.D. King. Overhauling the PDB. Nature Biotechnology, 25, No. 4, April 2007, pp 437 - 442. Sponsorship: Project IQ, EU IST-FET FP6-516169 BBSRC Project 2/BEP17028

Realism about PDB

Schierz,A.C., L. Soldatova, R.D. King. Realism about PDB. Nature Biotechnology, 25, No. 8, August 2007, p846. Sponsorship: Project IQ, EU IST-FET FP6-516169 BBSRC Project 2/BEP17028