Selection experiments reveal trade-offs between swimming and twitching motilities in pseudomonas aeruginosa

Bacteria possess a range of mechanisms to move in different environments, and these mechanisms have important direct and correlated impacts on the virulence of opportunistic pathogens. Bacteria use two surface organelles to facilitate motility: a single polar flagellum, and type IV pili, enabling swimming in aqueous habitats and twitching along hard surfaces, respectively. Here, we address whether there are trade-offs between these motility mechanisms, and hence whether different environments could select for altered motility. We experimentally evolved initially isogenic Pseudomonas aeruginosa under conditions that favored the different types of motility, and found evidence for a trade-off mediated by antagonistic pleiotropy between swimming and twitching. Moreover, changes in motility resulted in correlated changes in other behaviors, including biofilm formation and growth within an insect host. This suggests environmental origins of a particular motile opportunistic pathogen could predictably influence motility and virulence

Using experimental evolution to explore natural patterns between bacterial motility and resistance to bacteriophages

Resistance of bacteria to phages may be gained by alteration of surface proteins to which phages bind, a mechanism that is likely to be costly as these molecules typically have critical functions such as movement or nutrient uptake. To address this potential trade-off, we combine a systematic study of natural bacteria and phage populations with an experimental evolution approach. We compare motility, growth rate and susceptibility to local phages for 80 bacteria isolated from horse chestnut leaves and, contrary to expectation, find no negative association between resistance to phages and bacterial motility or growth rate. However, because correlational patterns (and their absence) are open to numerous interpretations, we test for any causal association between resistance to phages and bacterial motility using experimental evolution of a subset of bacteria in both the presence and absence of naturally associated phages. Again, we find no clear link between the acquisition of resistance and bacterial motility, suggesting that for these natural bacterial populations, phage-mediated selection is unlikely to shape bacterial motility, a key fitness trait for many bacteria in the phyllosphere. The agreement between the observed natural pattern and the experimental evolution results presented here demonstrates the power of this combined approach for testing evolutionary trade-offs.

Competition and dispersal in Pseudomonas aeruginosa

Dispersal plays a crucial role in a range of evolutionary and ecological processes; hence there is strong motivation to understand its evolution. One key prediction is that the relative benefits of dispersal should be greater when dispersing away from close relatives, because in this case dispersal has the additional benefit of alleviating competition with individuals who share the same dispersal alleles. We tested this prediction for the first time using experimental populations of the opportunistic pathogen Pseudomonas aeruginosa. We measured the fitness of isogenic genotypes that differed only in their dispersal behaviors in both clonal and mixed populations. Consistent with theory, the benefit of dispersal was much higher in clonal populations, and this benefit decreased with increasing growth rate costs associated with dispersal.

An implicit technique for solving 3D low Reynolds number moving free surface flows

This paper describes the development of an implicit finite difference method for solving transient three-dimensional incompressible free surface flows. To reduce the CPU time of explicit low-Reynolds number calculations, we have combined a projection method with an implicit technique for treating the pressure on the free surface. The projection method is employed to uncouple the velocity and the pressure fields, allowing each variable to be solved separately. We employ the normal stress condition on the free surface to derive an implicit technique for calculating the pressure at the free surface. Numerical results demonstrate that this modification is essential for the construction of methods that are more stable than those provided by discretizing the free surface explicitly. In addition, we show that the proposed method can be applied to viscoelastic fluids. Numerical results include the simulation of jet buckling and extrudate swell for Reynolds numbers in the range [0.01, 0.5]. (C) 2008 Elsevier Inc. All rights reserved.

Numerical solution of the PTT constitutive equation for unsteady three-dimensional free surface flows

This work deals with the development of a numerical technique for simulating three-dimensional viscoelastic free surface flows using the PTT (Phan-Thien-Tanner) nonlinear constitutive equation. In particular, we are interested in flows possessing moving free surfaces. The equations describing the numerical technique are solved by the finite difference method on a staggered grid. The fluid is modelled by a Marker-and-Cell type method and an accurate representation of the fluid surface is employed. The full free surface stress conditions are considered. The PTT equation is solved by a high order method, which requires the calculation of the extra-stress tensor on the mesh contours. To validate the numerical technique developed in this work flow predictions for fully developed pipe flow are compared with an analytic solution from the literature. Then, results of complex free surface flows using the FIT equation such as the transient extrudate swell problem and a jet flowing onto a rigid plate are presented. An investigation of the effects of the parameters epsilon and xi on the extrudate swell and jet buckling problems is reported. (C) 2010 Elsevier B.V. All rights reserved.

Numerical Solution of the Upper-Convected Maxwell Model for Three-Dimensional Free Surface Flows

This work presents a finite difference technique for simulating three-dimensional free surface flows governed by the Upper-Convected Maxwell (UCM) constitutive equation. A Marker-and-Cell approach is employed to represent the fluid free surface and formulations for calculating the non-Newtonian stress tensor on solid boundaries are developed. The complete free surface stress conditions are employed. The momentum equation is solved by an implicit technique while the UCM constitutive equation is integrated by the explicit Euler method. The resulting equations are solved by the finite difference method on a 3D-staggered grid. By using an exact solution for fully developed flow inside a pipe, validation and convergence results are provided. Numerical results include the simulation of the transient extrudate swell and the comparison between jet buckling of UCM and Newtonian fluids.

Dimensionamento de pilares esbeltos de concreto armado

O objetivo deste trabalho é o dimensionamento de pilares esbeltos de concreto armado, sob cargas de curta e longa duração, baseado numa análise realística das deformações do mesmo. Apresenta-se três algoritmos numéricos para a obtencão das relações momento fletor-esforço normal-curvatura de uma seção arbitrária de concreto armado, sob flexo-compressão normal. Inclue-se as deformações específicas de fluência e retração do concreto na análise, através de uma alteração nas referidas relações. Apresenta-se alguns critérios de normas, relativos ao dimensionamento de pilares esbeltos de concreto armado e uma comparação dos mesmos, entre si e com o algoritmo numérico desenvolvido. Considerações da NB-1/78 relativas ao projeto de pilares são analisadas, verificando o nivel da precisão obtida. Um procedimento simplificado para a inclusão da fluência do concreto no dimensionamento, proposto pelo CEB, é testado e uma solução para pilares de concreto armado com engastamento elástico simétrico é apresentada, para verificar o nível: do erro cometido ao se estender o conceito de comprimento de flambagem a pilares de concreto armado. Uma série de exemplos experimentais são apresentados, onde a solução numérica para o dimensionamento tem sua precisão verificada. Diversas tabelas foram desenvolvidas para o dimensionamento de pilares esbeltos com secão transversal retangular e armadura simétrica. Todo o estudo é restrito ao caso de flexo-compressão normal.

Um modelo numerico para analise de estruturas de materiais compostos considerando efeitos viscoelasticos e falhas progressivas

Neste trabalho apresentam-se pocedimentos para análise não linear de estruturas de materiais compostos laminados reforçados por fibras. A formulação é baseada em uma descrição cinemática incremental Lagrangeana Total, que permite o tratamento de deslocamentos arbitrariamente grandes com pequenas deformações, utilizando elementos finitos tridimensionais degenerados deduzidos para a análise de cascas. As estruturas são consideradas como submetidas a cargas mecânicas e a ações de temperatura e de umidade. O material é suposto elástico linear com propriedades dependentes, ou não, dos valores da temperatura e da concentração de umidade, ou viscoelástico linear com uma relação constitutiva em integral hereditária , e com comportamento higrotermo-reologicamente simples. As lâminas são consideradas como sujeitas a falhas, as quais são detectadas através de critérios macroscópicos, baseados em tensões ou em deformações. As equações não lineares de equilíbrio são resolvidas através de procedimentos iterativos e as deformações dependentes do tempo são avaliadas pelo método das variáveis de estado. Diversos exemplos numéricos de estruturas submetidas à flexão, flambagem elástica e viscoelástica e falhas são apresentados.

NONDEGENERATE UMBILICS, THE PATH FORMULATION and GRADIENT BIFURCATION PROBLEMS

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Robust control applications for smart truss structure

A finite element modeling of an intelligent truss structure with piezoelectric stack actuators for the purpose of active damping and structural vibration attenuation is presented. This paper concerns with the following issues aspects: the design of intelligent truss structure considering electro-mechanical coupling between the host structure and piezoelectric stack actuators; the H 2 norm approach to search for optimal placement of actuators and sensors; and finally some aspects in robust control techniques. The electro-mechanical behavior of piezoelectric elements is directly related to the successful application of the actuators in truss structures. In order to achieve the desired damping in the interested bandwidth frequency it is used the H ∞ output feedback solved by convex optimization. The constraints to be reached are written by linear matrix inequalities (LMI). The paper concludes with a numerical example, using Matlab and Simulink, in a cantilevered, 2-bay space truss structure. The results demonstrated the approach applicability.

Optimal placement of sensors/actuators in truss structures with known disturbances

An important stage in the solution of active vibration control in flexible structures is the optimal placement of sensors and actuators. In many works, the positioning of these devices in systems governed for parameter distributed is, mainly, based, in controllability approach or criteria of performance. The positions that enhance such parameters are considered optimal. These techniques do not take in account the space variation of disturbances. An way to enhance the robustness of the control design would be to locate the actuators considering the space distribution of the worst case of disturbances. This paper is addressed to include in the formulation of problem of optimal location of sensors and piezoelectric actuators the effect of external disturbances. The paper concludes with a numerical simulation in a truss structure considering that the disturbance is applied in a known point a priori. As objective function the C norm system is used. The LQR (Linear Quadratic Regulator) controller was used to quantify performance of different sensors/actuators configurations.

Passive vibration isolation using axially loaded curved beams

A nonlinear spring element of a vibration isolator should ideally possess high static and low dynamic stiffness. A buckled beam may be a good candidate to fulfil this requirement provided its internal resonance frequencies are high enough to achieve a wide frequency range of isolation. If a straight beam is used, there is a singularity in the force-displacement characteristic. To smooth this characteristic and eliminate the singularity at the buckling point, beams with initial constant curvature along their length are investigated here as an alternative to the buckled straight beam. Their force displacement characteristics are compared with different initial curvature and with a straight buckled beam. The minimum achievable dynamic stiffness with its corresponding static stiffness is compared for different initial curvatures. A case study is considered where the beams are optimized to isolate a one kilogram mass and to achieve a natural frequency of 1 Hz, considering small amplitudes of vibration. Resonance frequencies of the optimized beams for different curvature are presented. It is shown that an order of magnitude reduction in stiffness compared with a linear spring is achievable, while the internal resonance frequencies of the curved beam are high enough to achieve an acceptable frequency range of isolation.

Three-dimensional transient complex free surface flows: Numerical simulation of XPP fluid

In this paper we present a finite difference MAC-type approach for solving three-dimensional viscoelastic incompressible free surface flows governed by the eXtended Pom-Pom (XPP) model, considering a wide range of parameters. The numerical formulation presented in this work is an extension to three-dimensions of our implicit technique [Journal of Non-Newtonian Fluid Mechanics 166 (2011) 165-179] for solving two-dimensional viscoelastic free surface flows. To enhance the stability of the numerical method, we employ a combination of the projection method with an implicit technique for treating the pressure on the free surfaces. The differential constitutive equation of the fluid is solved using a second-order Runge-Kutta scheme. The numerical technique is validated by performing a mesh refinement study on a pipe flow, and the numerical results presented include the simulation of two complex viscoelastic free surface flows: extrudate-swell problem and jet buckling phenomenon. © 2013 Elsevier B.V.

Estudo da estabilidade e da capacidade resistente de painéis estruturais do sistema construtivo Light Steel Framing

Pós-graduação em Engenharia Civil - FEIS

Problemas de bifurcação de corank2 com dois parâmetros e a formulação por caminhos

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)