On the methods of determining size/weight characteristics of food organisms of fish. (Determination of the length of Copepoda in larval stages by egg-laying females of the free living freshwater Copepoda). [Translation from: Voprosy Ikhtiologii 14, 182-194, 1960. ]

As is known, copepods play an important role in the nutrition of fish. Therefore with a view to facilitating research on the study of the quantitative side of feeding, there have recently appeared a considerable number of papers devoted to the development of methods for determining the wet. weight of these crustaceans. For the further facilitating of research in the nutrition of fish it would be of great interest to clarify the problem, is there not some kind of rule in the growth of the crustaceans during metamorphosis, and if there is such a rule is it not possible, to determine the length of the larvae at each stage, not by measuring them, but by using the formulae derived on the basis of these rules. This article examines the growth curves of different species of freshwater Copepoda, obtained on the basis of experimental observations in cultures or by way of measurement of mass material at all stages of development in samples from water-bodies. The authors study in particular the ratio of the mean diameter of the eggs to the mean length of the egg-bearing females.

Programming chemical kinetics: engineering dynamic reaction networks with DNA strand displacement

Over the last century, the silicon revolution has enabled us to build faster, smaller and more sophisticated computers. Today, these computers control phones, cars, satellites, assembly lines, and other electromechanical devices. Just as electrical wiring controls electromechanical devices, living organisms employ "chemical wiring" to make decisions about their environment and control physical processes. Currently, the big difference between these two substrates is that while we have the abstractions, design principles, verification and fabrication techniques in place for programming with silicon, we have no comparable understanding or expertise for programming chemistry.

In this thesis we take a small step towards the goal of learning how to systematically engineer prescribed non-equilibrium dynamical behaviors in chemical systems. We use the formalism of chemical reaction networks (CRNs), combined with mass-action kinetics, as our programming language for specifying dynamical behaviors. Leveraging the tools of nucleic acid nanotechnology (introduced in Chapter 1), we employ synthetic DNA molecules as our molecular architecture and toehold-mediated DNA strand displacement as our reaction primitive.

Abstraction, modular design and systematic fabrication can work only with well-understood and quantitatively characterized tools. Therefore, we embark on a detailed study of the "device physics" of DNA strand displacement (Chapter 2). We present a unified view of strand displacement biophysics and kinetics by studying the process at multiple levels of detail, using an intuitive model of a random walk on a 1-dimensional energy landscape, a secondary structure kinetics model with single base-pair steps, and a coarse-grained molecular model that incorporates three-dimensional geometric and steric effects. Further, we experimentally investigate the thermodynamics of three-way branch migration. Our findings are consistent with previously measured or inferred rates for hybridization, fraying, and branch migration, and provide a biophysical explanation of strand displacement kinetics. Our work paves the way for accurate modeling of strand displacement cascades, which would facilitate the simulation and construction of more complex molecular systems.

In Chapters 3 and 4, we identify and overcome the crucial experimental challenges involved in using our general DNA-based technology for engineering dynamical behaviors in the test tube. In this process, we identify important design rules that inform our choice of molecular motifs and our algorithms for designing and verifying DNA sequences for our molecular implementation. We also develop flexible molecular strategies for "tuning" our reaction rates and stoichiometries in order to compensate for unavoidable non-idealities in the molecular implementation, such as imperfectly synthesized molecules and spurious "leak" pathways that compete with desired pathways.

We successfully implement three distinct autocatalytic reactions, which we then combine into a de novo chemical oscillator. Unlike biological networks, which use sophisticated evolved molecules (like proteins) to realize such behavior, our test tube realization is the first to demonstrate that Watson-Crick base pairing interactions alone suffice for oscillatory dynamics. Since our design pipeline is general and applicable to any CRN, our experimental demonstration of a de novo chemical oscillator could enable the systematic construction of CRNs with other dynamic behaviors.

A Comparative study on the onto-epistemological presuppositions in landscape descriptions of romantics and naturalists

Este póster fue presentado en la Summer School on Evolution en Lisboa (15-19 julio de 2013)

Landscape Genetics for the Empirical Assessment of Resistance Surfaces: The European Pine Marten (Martes martes) as a Target-Species of a Regional Ecological Network

Coherent ecological networks (EN) composed of core areas linked by ecological corridors are being developed worldwide with the goal of promoting landscape connectivity and biodiversity conservation. However, empirical assessment of the performance of EN designs is critical to evaluate the utility of these networks to mitigate effects of habitat loss and fragmentation. Landscape genetics provides a particularly valuable framework to address the question of functional connectivity by providing a direct means to investigate the effects of landscape structure on gene flow. The goals of this study are (1) to evaluate the landscape features that drive gene flow of an EN target species (European pine marten), and (2) evaluate the optimality of a regional EN design in providing connectivity for this species within the Basque Country (North Spain). Using partial Mantel tests in a reciprocal causal modeling framework we competed 59 alternative models, including isolation by distance and the regional EN. Our analysis indicated that the regional EN was among the most supported resistance models for the pine marten, but was not the best supported model. Gene flow of pine marten in northern Spain is facilitated by natural vegetation, and is resisted by anthropogenic landcover types and roads. Our results suggest that the regional EN design being implemented in the Basque Country will effectively facilitate gene flow of forest dwelling species at regional scale.

Living on the hyphen: diaspora, identity and memory in Jamaica Kincaids Annie John / Lucy and Esmeralda Santiagos When I was Puerto Rican / Almost a woman

Esta dissertação tem por objetivo investigar o desenvolvimento de identidades de sujeitos diaspóricos em formas de narrativas nas quais a memória tem um papel crucial. As autobiografias e os memoirs têm despertado a curiosidade de muitas pessoas interessadas nos processos de construção de identidade de indivíduos que vivem em realidades singulares e nos relatos que dão sobre suas próprias vidas. Assim, o crescente interesse em diásporas e nos decorrentes deslocamentos fragmentários, provocados pelo distanciamento de raízes individuais e pelo contato com diferentes códigos culturais, poderiam legitimar as narrativas autobiográficas como maneiras estratégicas de sintetizar os nichos de identificação de autores e autoras que experimentaram uma ruptura diaspórica. Desta forma, ao analisar estes tipos de narrativas, deve-se estar atento às especificidades de algumas escritoras que passaram por processos diaspóricos e a como elas recorreram as suas memórias pessoais para, em termos literários, expressar suas subjetividades. Considerando todas essas idéias, tenciono usar Annie John e Lucy, de Jamaica Kincaid e When I Was Puero Rican e Almost a Woman, de Esmeralda Santiago como fontes de análise e amostras do desenvolvimento de identidades diaspóricas em narrativas autobiográficas

Ouvir na pele o terceiro som: ficções experimentadas e transformações sensoriais

A pesquisa surgiu a partir de investigações e experiências próprias com a escuta, a produção de sonoridades, a criação de ambientes e a realização de derivas intersensoriais. A articulação se dá segundo uma perspectiva transdisciplinar e em relação a alguns trabalhos artísticos e textuais especialmente significativos. A construção do sensorial e das subjetividades e suas possibilidades de transformação e emancipação, através de uma arte vinculada à vida, são questões centrais. Os conceitos de fabulação, linhas, cartografias e desterritorializações desenvolvidos por Deleuze, a ecosofia de Félix Guattari e a noção de corpos vibráteis em Suely Rolnik são fundamentais, assim como as observações de Lygia Clark e Hélio Oiticica a respeito de suas próprias experiências. Estudos históricos e culturais dos sentidos, como os de Constance Classen e David Howes, além de observações de teóricos distintos como Karl Marx, Walter Benjamin, Michel Serres e Jacques Ranciére auxiliam a traçar um panorama inicial do constructo sensorial no Ocidente moderno e contemporâneo. Questões relativas a som, silêncio e ruído levaram à utilização de conceitos como escuta e ressonância em um sentido ampliado, que não se restringe a fenômenos sonoros ou físicos. A articulação entre escuta, intersensorialidade, imaginação e memória contribuiu para o desenvolvimento inicial do conceito de terceiro som aqui presente. A percepção do texto como ativador de sensações e devaneios, as relações entre conceito e concreto e o relato não-realista de acontecimentos levaram às ficções experimentadas. O ato da deriva relaciona-se ao desregramento de todos sentidos e implica a vivência de margens, desvios e extremos, fronteiras em dissolução, diásporas nos interstícios. Poéticas e políticas da alteridade, da diferença e do estranhamento fazem-se presentes em experiências de um ambiente-vivo, paisagem-corpo-outro. Tais questões atravessam meus trabalhos, que são realizados de diferentes maneiras, em cartografias e rituais que podem incluir sons, textos, desenhos, objetos, fotografia, vídeos, vestimentas, ações, situações, etc. A abordagem das questões presentes se dá através de algumas passagens por escritores como Rimbaud, Borges e Italo Calvino; teóricos de diferentes áreas, como Guy Brett, Douglas Kahn, De Certeau, Michel Onfray, James J.Gibson e Donna Haraway; e trabalhos e textos de diversos artistas fundamentais, como Marcel Duchamp, John Cage, Allan Kaprow, George Maciunas e o Fluxus, Yoko Ono, Laurie Anderson, Gordon-Matta-Clark, Robert Smithson, Bill Viola, Cildo Meireles e Lygia Pape, entre outros

Island life in the Cretaceous - faunal composition, biogeography, evolution, and extinction of land-living vertebrates on the Late Cretaceous European archipelago

The Late Cretaceous was a time of tremendous global change, as the final stages of the Age of Dinosaurs were shaped by climate and sea level fluctuations and witness to marked paleogeographic and faunal changes, before the end-Cretaceous bolide impact. The terrestrial fossil record of Late Cretaceous Europe is becoming increasingly better understood, based largely on intensive fieldwork over the past two decades, promising new insights into latest Cretaceous faunal evolution. We review the terrestrial Late Cretaceous record from Europe and discuss its importance for understanding the paleogeography, ecology, evolution, and extinction of land-dwelling vertebrates. We review the major Late Cretaceous faunas from Austria, Hungary, France, Spain, Portugal, and Romania, as well as more fragmentary records from elsewhere in Europe. We discuss the paleogeographic background and history of assembly of these faunas, and argue that they are comprised of an endemic 'core' supplemented with various immigration waves. These faunas lived on an island archipelago, and we describe how this insular setting led to ecological peculiarities such as low diversity, a preponderance of primitive taxa, and marked changes in morphology (particularly body size dwarfing). We conclude by discussing the importance of the European record in understanding the end-Cretaceous extinction and show that there is no clear evidence that dinosaurs or other groups were undergoing long-term declines in Europe prior to the bolide impact.

RESTful Discovery and Eventing for Service Provisioning in Assisted Living Environments

Service provisioning in assisted living environments faces distinct challenges due to the heterogeneity of networks, access technology, and sensing/actuation devices in such an environment. Existing solutions, such as SOAP-based web services, can interconnect heterogeneous devices and services, and can be published, discovered and invoked dynamically. However, it is considered heavier than what is required in the smart environment-like context and hence suffers from performance degradation. Alternatively, REpresentational State Transfer (REST) has gained much attention from the community and is considered as a lighter and cleaner technology compared to the SOAP-based web services. Since it is simple to publish and use a RESTful web service, more and more service providers are moving toward REST-based solutions, which promote a resource-centric conceptualization as opposed to a service-centric conceptualization. Despite such benefits of REST, the dynamic discovery and eventing of RESTful services are yet considered a major hurdle to utilization of the full potential of REST-based approaches. In this paper, we address this issue, by providing a RESTful discovery and eventing specification and demonstrate it in an assisted living healthcare scenario. We envisage that through this approach, the service provisioning in ambient assisted living or other smart environment settings will be more efficient, timely, and less resource-intensive.

Arte medioambiental y ecología. Paradigmas de comprensión, interpretación y valoración de las relaciones entre arte y ecología (1960-2015)

549 pp. (Bibliogr. pp. 501-522) (Conclusiones pp. 467-483/ Conclusions pp. 484-497)

Proteomic Analysis of the Ubiquitin Landscape in the Drosophila Embryonic Nervous System and the Adult Photoreceptor Cells

Background Ubiquitination is known to regulate physiological neuronal functions as well as to be involved in a number of neuronal diseases. Several ubiquitin proteomic approaches have been developed during the last decade but, as they have been mostly applied to non-neuronal cell culture, very little is yet known about neuronal ubiquitination pathways in vivo. Methodology/Principal Findings Using an in vivo biotinylation strategy we have isolated and identified the ubiquitinated proteome in neurons both for the developing embryonic brain and for the adult eye of Drosophila melanogaster. Bioinformatic comparison of both datasets indicates a significant difference on the ubiquitin substrates, which logically correlates with the processes that are most active at each of the developmental stages. Detection within the isolated material of two ubiquitin E3 ligases, Parkin and Ube3a, indicates their ubiquitinating activity on the studied tissues. Further identification of the proteins that do accumulate upon interference with the proteasomal degradative pathway provides an indication of the proteins that are targeted for clearance in neurons. Last, we report the proof-of-principle validation of two lysine residues required for nSyb ubiquitination. Conclusions/Significance These data cast light on the differential and common ubiquitination pathways between the embryonic and adult neurons, and hence will contribute to the understanding of the mechanisms by which neuronal function is regulated. The in vivo biotinylation methodology described here complements other approaches for ubiquitome study and offers unique advantages, and is poised to provide further insight into disease mechanisms related to the ubiquitin proteasome system.

A post-tsunami assessment of coastal living resources of Langkawi Archipelago, Peninsular Malaysia

Rapid and detailed post-tsunami surveys carried out in the Langkawi archipelago in January 2005 showed that the coral reefs dOld_ID not suffer any significant structural damage. Nevertheless, there were signs of recent sediment resuspension at the sites studied. The diversity and abundance of coral reef fishes and invertebrates were low. However, this was not attributed to the tsunami effect but rather to the present environmental conditions. The extent of damage at the villages of Kubang Badak and Kuala Teriang may indicate that intact coastal ecosystems such as mangroves have the potential to protect lives and property during natural disasters.