Genetic conservation of Brazilian fishes - Present state and perspectives

Natural environments have been worldwide affected by the growing impact of anthropogenic actions that promote the reduction or the extinction of several vertebrate species. Aquatic ecosystems represent one of the most affected environments and many fish species and/or populations have been increasingly fragmented distributed due to habitat degradation, predatory fishing, introduction of exotic species, river sedimentation, deforestation, pollution, reduction of food resource, and construction of hydroelectric dams. Actually, more than 150 Brazilian fish species, including freshwater, estuary and coastal species, can be considered threatened. Information on the diversity, conservation biology and population analysis on threatened species or populations, with several DNA markers, can be extremely useful for the success of fish species-recovery and maintenance programs. Although DNA analysis in Neotropical fish species are just beginning, they tend to increase with the widespread attention to the use of molecular approaches to minimize problems related to the risk of extinction. The accumulation of information on biology and pattern of genetic variation of fish species, associated with ecological and demographic data, and also education and respect to the nature, constitutes a crucial task to develop efficient conservation strategies in order to preserve the genetic diversity in aquatic environments.

The condition factor of fishes from two river basins in São Paulo state, Southeast of Brazil

This work describes the relative condition factor of the Hypostomus strigaticeps, Astyanax altiparanae, Astyanax scabripinnis, Astyanax fasciatus, Astyanax sp1., Characidium aff. zebra, Piabina argentea, Hypostomus ancistroides, Hypostomus sp1., Parodon tortuosus, Serrapinus heterodon, and Bryconamericus sp., of the APA of São Pedro and Analândia (22°-23°S and 47°30'-48°30'W). The condition factor provides information about the physical state of the animal in the environment. In order to compare different species, the relative condition factor was used. Variations in this factor were correlated with variations through the year and with subsequent alterations in the physiological state of the fishes. The relative condition factor was shown to be efficient in indicating changes in fish condition throughout the year.

Spatial distribution of characidiin fishes (Teleostei, Crenuchidae) in the Ribeirão Grande system, a tributary of Paraíba do Sul river basin, Brazil

This study analyses the spatial distribution of characidiin fishes Characidium lauroi and Characidium alipioi (Crenuchidae) in a forest stream system located in southeastern Brazil. Fish were sampled from Jury 2001 to April 2002. Collections were made with an electro-fishing device in five stream reaches of the Ribeirão Grande system. Conductivity, pH, water temperature and dissolved oxygen were measured at each site. The species have different distributions in Ribeirão Grande system. Characidium lauroi is abundant in montane-piedmont zones and Characidium alipioi occurs mainly in piedmont-plain zones. Streams' different features contribute to these species' distribution in the system.

Length structure of fishes from a protected area in the State of São Paulo, Southeastern Brazil

The aim of this work was to study the length distribution of some fish species from the Protected Area of São Pedro and Analândia, State of São Paulo, Southeastern Brazil. Length distributions were correlated to environmental conditions at each sample site. For the most abundant species, length structure was compared among the streams of each basin and between basins. Differences in length structure were related to differences in growth, habitats, and even population.

Spatial distribution and shell utilization in three sympatric hermit crabs at non-consolidated sublittoral of estuarine-bay complex in São Vicente, São Paulo, Brazil

The objective of the present study was to characterize the spatial distribution and shell utilization of three hermit crab species in the estuarine-bay complex of São Vicente, São Paulo State, Brazil. Monthly samples were done throughout two years, in the non-consolidated sub-littoral at the estuarine-bay complex. The environmental factors, such as temperature, salinity and depth, were measured every month. The three hermit crab species, Clibanarius vittatus, Loxopagurus loxochelis and Isocheles sawayai, were captured utilizing shells from six gastropods species; 92.7% of the hermit crabs utilized Stramonita haemastoma. The results suggest a strong correlation between hermit crabs spatial distribution and salinity, which was considered the main environmental factor limiting their distribution in the estuary. I. sawayai was the only species present in all transects sampled; C. vittatus was captured only in regions with low salinity and L. loxochelis occurred only in high salinity waters.

Environmental parameters and antimicrobial susceptibility of enterobacteriaceae isolated from estuarine waters of São Vicente, São Paulo State, Brazil

Diseases transmitted by water consists a serious public health problem and enterobacteria are the main group of microorganisms responsible for outbreaks in humans. Such pathogenic bacteria proliferate in water polluted by domestic and industrial sewage and reach the population through seawater contact. The aim of the present work was to study environmental parameters as well as to identify Enterobacteriaceae species and their antimicrobial susceptibility in water samples collected from the estuarine area of São Vicente city (São Paulo State, Brazil). Strains were identified by using traditional biochemical tests described in literature and antimicrobial susceptibility tests were carried out using the disk diffusion method. Out of 26 samples, Escherichia coli was the most frequent species (40.1%), followed by Citrobacter, Enterobacter and Klebsiella. The most effective drugs against the tested microorganisms were gentamycin, netilmicin, ciprofloxacin and cefepime. Since these bacteria are commonly found in seashore contaminated by sewage effluents, it can be concluded that estuarine waters of São Vicente are polluted and potentially capable of causing diseases and spreading pathogenic bacteria to human communities.

Feeding habits of Guiana dolphins, Sotalia guianensis, from south-eastern Brazil: New items and a knowledge review

This study presents new information on feeding habits of Guiana dolphins, Sotalia guianensis, in south-eastern Brazil, together with new regression equations to evaluate the weight and length of fish from otoliths, showing an overview on the knowledge about this species-diet in this area. Eighteen stomach contents had been analysed and compared to 180 samples collected in another eight feeding studies. The analysed specimens were either incidentally caught in gillnets used in coastal waters by the fleet based in the Cananéia main harbour (25°00âS 47°55âW), south of São Paulo State, or found dead in inner waters of the Cananéia estuary between 2003 and 2009. Based on the index of relative importance analysis, the most important fish species were the banded croaker, Paralonchurus brasiliensis. Doryteuthis plei was the most representative cephalopod species. Stellifer rastrifer was the most important fish species observed in dolphins in inner estuarine waters and P. brasiliensis in recovered dolphins from coastal waters. Loliguncula brevis is the only cephalopod species reported from dolphins found in inner estuarine waters up to date. Doryteuthis plei was the most important cephalopod species observed in coastal dolphins. When considering other feeding studies, the most representative fish family in the diet of S. guianensis was Sciaenidae, which is mainly represented by demersal fishes. The main preys of S. guianensis are abundant in the studied areas, which may indicate an opportunistic feeding habit. The majority of them are not the most important target species by the commercial fishery in south-eastern Brazil. © 2012 Marine Biological Association of the United Kingdom.

Are NORs Always Located on Homeologous Chromosomes? A FISH Investigation with rDNA and Whole Chromosome Probes in Gymnotus Fishes (Gymnotiformes)

Gymnotus (Gymnotiformes, Gymnotidae) is the most diverse known Neotropical electric knife fish genus. Cytogenetic studies in Gymnotus demonstrate a huge karyotypic diversity for this genus, with diploid numbers ranging from 34 to 54. The NOR are also variable in this genus, with both single and multiple NORs described. A common interpretation is that the single NOR pair is a primitive trait while multiple NORs are derivative. However this hypothesis has never been fully tested. In this report we checked if the NOR-bearing chromosome and the rDNA site are homeologous in different species of the genus Gymnotus: G. carapo (2n = 40, 42, 54), G. mamiraua (2n = 54), G. arapaima (2n = 44), G. sylvius (2n = 40), G. inaequilabiatus (2n = 54) and G. capanema (2n = 34), from the monophyletic group G. carapo (Gymnotidae-Gymnotiformes), as well as G. jonasi (2n = 52), belonging to the G1 group. They were analyzed with Fluorescence in situ hybridization (FISH) using 18S rDNA and whole chromosome probes of the NOR-bearing chromosome 20 (GCA20) of G. carapo (cytotype 2n = 42), obtained by Fluorescence Activated Cell Sorting. All species of the monophyletic G. carapo group show the NOR in the same single pair, confirmed by hybridization with CGA20 whole chromosome probe. In G. jonasi the NORs are multiple, and located on pairs 9, 10 and 11. In G. jonasi the GCA20 chromosome probe paints the distal half of the long arm of pair 7, which is not a NOR-bearing chromosome. Thus these rDNA sequences are not always in the homeologous chromosomes in different species thus giving no support to the hypothesis that single NOR pairs are primitive traits while multiple NORs are derived. The separation of groups of species in the genus Gymnotus proposed by phylogenies with morphologic and molecular data is supported by our cytogenetic data. © 2013 Milhomem et al.

Geochemical and ecotoxicological assessment for estuarine surface sediments from Southern Brazil

Sediments from Guaratuba Bay (PR, Brazil), a marine protected area, were collected and evaluated for geochemistry and toxicity. High levels of P and acute toxicity were observed in some samples. Concentrations of Cu, Cd, Pb and Zn were relatively low; however, Cd levels eventually exceeded Threshold Effect Level. Toxicities were associated to nutrients and metals enrichment. Results suggest that impacts are incipient and occur only at specific sites, associated to multiple contamination sources. Despite sediments quality seems to range between good and fair, attention is required to land-use planning around Guaratuba Bay and controlling local pollution sources. © 2013 Elsevier Ltd. All rights reserved.

Recreational anglers and fishing guides from an estuarine protected area in southeastern Brazil: Socioeconomic characteristics and views on fisheries management

The Iguape and Cananéia Lagoon-Estuarine Complex is a biodiversity hotspot in southeastern Brazil. In recent decades, the region has become an important destination for recreational fishing. The objective of this study was to analyze the socioeconomic characteristics of visiting anglers and fishing guides working in the Cananéia-Iguape-Peruíbe Environmental Protected Area and their views on fisheries management. Data were collected through semi-structured interviews conducted between January 2009 and January 2010. We interviewed 278 anglers, who were predominantly male (93%) with a mean age of 47 years and from the state of São Paulo. The targeted species were snooks (Centropomus undecimales and Centropomus parallelus) and weakfishes (Cynoscion leiarchus and Cynoscion acoupa). Only half the anglers had the mandatory fishing license, and many of them lacked knowledge about catch quotas and minimum size requirements for specific species. The fishing guides (n = 80) were all male, with a mean age of 39 years and extensive experience. Most of the guides believe that the study area is somewhat degraded due to the removal of riparian vegetation, siltation, pollution, and especially the depletion of fish stocks. The opinions of the stakeholders (anglers and guides) converge on the high priority needs of the fishery and possible management actions regarding recreational fishing, such as improved fisheries enforcement (first in order of importance), proper training of fishing guides, zoning of fishing areas, and the definition of a maximum size limit. © 2013 Elsevier Ltd.

Integrated quality assessment of sediments from harbour areas in Santos-São Vicente Estuarine System, Southern Brazil

Santos-São Vicente Estuarine System is a highly populated coastal zone in Brazil and where it is located the major port of Latin America. Historically, port activities, industrial and domestic effluents discharges have constituted the main sources of contaminants to estuarine system. This study aimed to assess the recent status of sediment quality from 5 zones of Port of Santos by applying a lines-of-evidence approach through integrating results of: (1) acute toxicity of whole sediment and chronic toxicity of liquid phases; (2) grain size, organic matter, organic carbon, nitrogen, phosphorus, trace metals, polycyclic aromatic hydrocarbons, linear alkylbenzenes and butyltins; (3) benthic community descriptors. Results revealed a gradient of increasing contamination for metals and organic compounds, alongside with their geochemical carriers. Sediment liquid phases were more toxic compared to whole sediment. Low number of species and individuals indicated the impoverishment of benthic community. The use of site-specific sediment quality guidelines was more appropriate to predict sediment toxicity. The integration of results through Sediment Quality Triad approach and principal component analysis allowed observing the effects of natural stressors and dredging on sediment quality and benthic distribution. Even with recent governmental efforts to control, pollution is still relevant in Port of Santos and a threat to local ecosystems. © 2013 Elsevier Ltd.

Cytogenetic studies in fishes of the genera Hassar, Platydoras and Opsodoras (Doradidae, Siluriformes) from Jarí and Xingú Rivers, Brazil

We studied the karyotypes of Hassar cf. orestis and an undescribed Hassar species from the Jarí River and Opsodoras ternetzi, H. orestis and Platydoras cf. costatus from the Xingú River, all with 2n = 58. Constitutive heterochromatin is located in the centromere in most metacentric pairs; in some chromosomes this banding is not present, or it is located on the whole chromosome arm or in the distal regions. The NOR is located on a single biarmed pair at a distal region of the short arm in H. cf. orestis, H. orestis and P. cf. costatus at a distal region of the long arm in O. ternetzi and at a proximal region of the long arm in the Hassar species. In all species (except for Hassar sp.) the CMA3 analysis revealed a rich G-C region coincident with the NOR. Probably inversions occurred in the NOR chromosome during the chromosomal differentiation of the Doradidae species here described.

Biologia e estrutura populacional das espécies da família sciaenidae (Pisces : Perciformes), no estuário do rio Caetê município de Bragança, Pará-Brasil

O presente estudo estima a biomassa média e caracteriza a distribuição espaço-temporal dos peixes da familia Sciaenidae no estuário do rio Caeté, no litoral norte do Brasil com ênfase nas espécies Stellifer rastrifer, Stellifer naso, Macrodon ancytodon e Cynoscion rnicrolepidotus. Estimam-se parâmetros biológicos como a idade da primeira maturação sexual (L₅₀ ), os períodos de desova, a relação peso-comprimento, hábitos alimentares, a sobreposição das dietas, o consumo médio de alimento por unidade de peso (Q/B), bem como a estrutura e dinâmica populacional. Para tal durante o período outubro de 1996 a agosto de 1997, foram feitas 6 coletas bimensais, no estuário do rio Caeté. Onze espécies de peixes da família Sciaenidae foram coletadas. A biomassa média da família Sciaenidae foi de 0,840g/m². A distribuição espacial da biomassa no sistema foi relacionada com a dinâmica de recrutamento e reprodução das espécies. Assim, os juvenis das espécies S. rastrifer, S. naso e M. ancylodon distribuíram-se nas áreas mais internas do estuário e os adultos nas áreas externas, com maiores teores de salinidade. Os valores de L₅₀ foram estimados em 10cm, 10,7cm e 21,5cm, respectivamente. Foram determinados para essas três espécies dois períodos anuais de reprodução, que definiram dois períodos de recrutamento, cada coorte apresentando diferentes parâmetros de crescimento. As relações peso-comprimento foram do tipo alométrico positivas, sem mostrar diferenças significativas entre sexos. Foi achada uma mudança na composição da dieta relacionada com o tamanho da espécie. Assim o zooplâncton foi comum nos indivíduos jovens, para ser substituído por juvenis de crustáceos decápodos, poliquetas e juvenis de peixes nos indivíduos maiores. O grau de sobreposição das dietas variou durante o desenvolvimento ontogénico das espécies. A relação Q/B mostrou que as espécies menores como S. rastrifer e S. naso consumem anualmente maior proporção de alimento em relação ao seu peso corporal, ao ser comparado com as espécies maiores M. ancylodon e C. rnicrolepidotus. Os resultados demostraram maiores taxas de crescimento, menores comprimentos para cada idade e menor longevidade para os peixes do estuário do Caeté, quando comparados com as mesmas espécies em latitudes maiores.

Pesca, alimentação e ecologia reprodutiva e embrionária de carataí (Pseudauchenipterus nodosus) (Siluriformes, Auchenipteridae) no rio Marapanim, Marapanim, Pará

Este trabalho apresenta informações sobre a pesca, alimentação, reprodução e desenvolvimento embrionário do carataí, Pseudauchempterus nodosus, com base em material coletado no rio Marapanim, PA, no período de dezembro de 1998 a abril de 1999. Para tal, foram realizadas coletas diárias e quinzenais, utilizando-se curral, tapagem e cerca, em quatro trechos do rio: na baía, no funil estuarino, nas porções média e superior. Foi confirmada que a pesca era realizada durante o período reprodutivo da espécie, sendo a maior parte da produção vendida nos municípios vizinhos. Os dados de captura ao longo do rio destacaram a porção superior (33%) e média (44%) como os trechos mais produtivos do rio Marapanim e indicaram que o carataí realiza movimento ascendente regido pela lua. A espécie ingeriu maiores porções de alimento no trecho de água túrbida, principalmente nos córregos de maré, sendo sua dieta composta por anelídeos, artrópodes, moluscos e peixes. As observações locais e a distribuição das freqüências dos ovários nos estádios maduro, de reprodução e esvaziado indicaram que o carataí desova no trecho de água doce e limpa, nas margens do rio e dos igarapés, sob floresta não perturbada. As desovas ocorrem durante os últimos picos das marés máximas de sizigia, e após a retração das marés, os ovos são incubados no solo por cerca de 11 dias até a sizigia seguinte, sob temperatura de 22 a 27,5 °C. Após a eclosão, enquanto a maré não chega, os embriões permanecem na casca e, quando escapam desta, sobrevivem no solo por cerca de duas horas. Esses embriões eclodem aptos a consumir alimento exógeno, enquanto que aqueles incubados na água eclodiam precocemente, aparentando pouca percepção do ambiente. A interferência na reposição anual de carataí no rio Marapanim pareceu depender mais da distribuição das chuvas locais e da integridade da floresta do que da pesca.

Predicting biological parameters of estuarine benthic communities using models based on environmental data

Este trabalho objetivou predizer parâmetros da estrutura de associações macrobentônicas (composição específica, abundância, riqueza, diversidade e equitatividade) em estuários do Sul do Brasil, utilizando modelos baseados em dados ambientais (características dos sedimentos, salinidade, temperaturas do ar e da água, e profundidade). As amostragens foram realizadas sazonalmente em cinco estuários entre o inverno de 1996 e o verão de 1998. Em cada estuário as amostras foram coletadas em áreas não poluídas, com características semelhantes quanto a presença ou ausência de vegetação, profundidade e distância da desenbocadura. Para a obtenção dos modelos de predição, foram utilizados dois métodos: o primeiro baseado em Análise Discriminante Múltipla (ADM) e o segundo em Regressão Linear Múltipla (RLM). Os modelos baseados em ADM apresentaram resultados melhores do que os baseados em regressão linear. Os melhores resultados usando RLM foram obtidos para diversidade e riqueza. É possível então, concluir que modelos como aqui derivados podem representar ferramentas muito úteis em estudos de monitoramento ambiental em estuários.