Análises, aplicações e validações–numérico/experimentais do modelo SWAN em áreas restritas e ao largo

Pós-graduação em Engenharia Elétrica - FEIS

Inventário da ictiofauna do alto rio Paraíba do Sul e caracterização molecular das espécies encontradas

The state of São Paulo has four main drainages: Paraná river, Paraíba do Sul river, Ribeira do Iguape river and coastal rivers. The Paraíba do Sul river is born in Sao Paulo and drains an important range of land east of the state. Its ichthyofauna has some similarities and many differences from the continental and coastal drainages which highlights the importance of this study. Surveys conducted in the ichthyofauna of this basin, as in other large river basins in Brazil, is still incomplete. Moreover, there is no consensus about the taxonomic status of many species listed in these surveys. Considering the promising use of DNA barcode as a global system for species identification, the present study is aimed to establishing an inventory of the ichthyofauna of the São Paulo portion of the river Paraíba do Sul and simultaneously build a DNA barcode reference sequence library for fish found. Were obtained and analyzed 354 sequences of the gene cytochrome oxidase c subunit I (COI) belonging to 66 species of São Paulo portion of the Paraíba do Sul river. The average K2P distance between individuals within species of this basin was 0.48%, and 9,87% between species within a genus. Five pairs of species (10 species) showed low levels of interspecific genetic divergence (<2%),but all could be correctly identified. This study showed that the fish species analyzed could be identified efficiently through the use of barcode generating data that can provide information for further studies of this fauna, besides contributing to the global initiative to characterize the species of fish in the world of a molecular point of view. Five pairs of species (10 species) showed low levels of interspecific genetic divergence (<2%), but all could be correctly identified. This study showed that the fish species analyzed could be identified efficiently through the use of barcode generating data that can provide subsidies for further studies in this fauna, as well as ...

Mapeamento da ilha da Trindade, Atlântico Sul

The area chosen for this study is the island of Trinidade, which is located 1167 km off the Brazilian coast, in parallel Victory at 20 ° 30'S and 29 º 19'W, being the most easterly point of our continent. The isolation of oceanic island of Trinidade leaves no noticeable that she is part of a large submarine volcanic chain oriented east-west lineament known as Vitória- Trindade. Along with the island of Martin Vaz, who is Federal Territory is administered by the Navy of Brazil. Both correspond to Source alkaline volcanic islands. The area of the island of Trinidad has approximately 10 km2. Geologically consisting ankaratritic spills, spills tannbuschiticos, volcanic tuff spills analcite-ankaratrite, phonolite spills, spills nefelinite, pyroclastics, spills grazinite, tinguaitos, olivine-analcitito, calcarenite dunes and wind according to Almeida (1961). The island has its base on the ocean floor, at 5,800 m depth. It is the only place still recognizes preserved volcanic necks and plugs, as well as remnants of a volcano in Brazil. Magmatism occurred here a sodium alkali-silica subsaturated where his wrist was last 50,000 years according to Almeida (1961). It is a place with restricted access due to their distance from the coast, his contribution and hard to be an exclusive area of the Navy. On the island with peaks occur up to 620 meters high, and its rugged mountainous terrain and difficult access to very specific points, as the peak of Desire, peak Fazendinha, Monument and other points on the island. Because of its location far from the coast, its small infrastructure, difficulty of landing and restricted access by sea, the island of Trinidad offers no possibility of tourism, being a military outpost, and scientific basis of great importance, which conduct research in area of marine biology, oceanography, geology and others

Caracterização morfológica e fenotípica de leveduras do gênero Cryptococcus com ênfase na pesquisa de Cryptococcus neoormans isoladas de amostras de água de mar e areia de três ambientes costeiros do estado de São Paulo: Canal de São Sebastião, Baixada Santista e Ubatuba

The yeast Cryptococcus neoformans is the etiologic agent of cryptococcosis, an infectious cosmopolitan disease that affects humans. Although rare, this disease is potentially fatal, especially for immunocompromised hosts. This pathogen is frequently isolated from excrements of pigeons and parrots, with many environmental sources such as birds, pigeon droppings, eucalyptus leaves, decaying trees, towers, churches and places of storage of grain (the port area). The isolation of this microorganism has been obtained also from the aquatic environment. The identification of environmental sources is needed to protect human health, especially susceptible populations such as immunocompromised. Therefore, this study investigated the presence of Cryptococcus neoformans in yeast isolates obtained from samples of sea water and sand from three regions of São Paulo: São Sebastião Channel, Santos and Ubatuba. Isolates were analyzed according to micro-and macroscopic characteristics and biochemical tests: microculture, urease, ink nankin, auxanograma, zymogram and phenol. We analyzed 199 isolates, 175 of which had features suggestive for Cryptococcus spp. in microculture. All these 175 isolates were sown in the Christensen urea middle to verify the production of urease and submitted to the technique nankin ink to visualize the capsule. Of these, only 24 were selected for the next test that was the auxanograma (assimilation of carbohydrate and nitrogen). Of the 24, 10 were tested in zymograms (fermented sugar), from which 5 were selected for the phenoloxidase test in medium containing dopamine. None of the 5 isolates tested had black or brown color characteristic of Cryptococcus neoformans. According to these tests, we arrived at 5 isolates identified to the genus Cryptococcus, but not the neoformans specie

Variabilidade e diversidade genética de populações de Ocotea notata (Nees & Mart.) Mez (Lauraceae)

O presente trabalho analisou os parâmetros genéticos populacionais de variabilidade e diversidade genética de diferentes populações de Ocotea notata (Nees & Mart.) Mez, através de marcadores de DNA do tipo ISSR (Inter Single Sequence Repeats). Para tanto, foram amostrados 243 indivíduos de 12 populações selecionadas na Bahia e Espírito Santo, que ocorrem em campos rupestres e vegetações de restinga, a saber, morfotipos de Ocotea glaucina (Meisn.) Mez: Morro do Chapéu: populações do Tabuleiro dos Guaribas, Ferro Doido, Cria Bode e Lajes; Umburanas; Jacobina; Lençóis: população da Serra das Paridas, e os morfotipos de O. notata, Esplanada: população de Baixios; Salvador: população das Dunas do Abaeté, Alcobaça, Mucuri, e Vila Velha, ES: população de Jacarenema. O DNA total já se encontrava extraído e quantificado em gel de agarose. Foram testados 20 primers de ISSR (University of British Columbia), dos quais quatro apresentaram resultados adequados para as análises, a saber: Manny, Mao, John e UBC 844. A otimização dos protocolos de reações de PCR foi feita no Laboratório de Evolução Molecular, da UNESP de Rio Claro, com a execução das reações de PCR para cada um dos primers, para cada população, e subsequentemente foram feitas as análises dos resultados sob o arcabouço teóricometodológico da genética de populações. A Análise de Variância Molecular (AMOVA) indicou que 23% da variabilidade ocorre entre populações dentro de regiões e 76% entre indivíduos dentro de populações, com variação significativa de 1% ocorrendo entre regiões (populações de Restinga vs. Campos Rupestres)

Relações filogenéticas e revisão taxonômica das espécies do gênero Copella Myers, 1956 (Characiformes: Lebiasinidae)

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Estimation of Submerged Aquatic Vegetation Height and Distribution in Nova Avanhandava Reservoir (São Paulo State, Brazil) Using Bio-Optical Modeling

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Ocurrence of male morphotypes of Macrobrachium amazonicum (Caridea, Palaemonidae) in a population with an entirely freshwater life cycle

This study records, for the first time, the occurrence of all four male morphotypes in a population of Macrobrachium amazonicum from a continental environment, with an entirely freshwater life cycle. The specimens studied came from the Tietê River, state of São Paulo, Brazil, and were collected in a lotic environment downstream from Ibitinga Dam. This population was compared with other continental populations, including a population from the dam itself, collected in a previous study. Four samples of 30 minutes were taken monthly, using a trap, from January to April 2011. Each male specimen was measured with respect to seven body dimensions as follows: carapace length (CL), right cheliped length (RCL), dactyl length (DCL), propodus length (PPL), carpus length (CRL), merus length (ML) and ischium length (IL). The relative growth was analyzed based on the change in growth patterns of certain body parts in relation to the independent variable CL. The four male morphotypes proposed for the species were found using morphological and morphometric analyses. Different biological characteristics were found between the populations studied. The male population of the lake of Ibitinga and from Pantanal presented mean sizes and number of morphotypes lower than the population studied here. These differences seem to be closely related to ecological characteristics of the environments inhabited by these populations. Our results supported the hypothesis that coastal and continental populations of M. amazonicum belong to the same species.

Estrutura e funcionamento da alça microbiana nos sedimentos da Baía do Araçá, São Sebastião - SP

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Paleocorrentes e paleogeografia do Grupo Aerado, cretáceo inferior da Bacia Sanfranciscana

The Areado Group of the Sanfranciscana Basin is a Lower Cretaceous continental sedimentary system that is correlated to the Brazilian Pre-Salt beds. The Aerado Group is composed of Abaeté, Quiricó and Três Barras formations. Paleocurrent data for the Areado Group were previously presented, although not systematically which prevented significative interpretations on the basin paleogeography. This work attempts to systematically evaluate paleocurrent data, aiming to recognize depositional environment and paleogeographic reconstruction, based on the sedimentary facies and paleocurrents measurements along vertical profiles. Fluvial paleocurrents of the Abaeté Formation indicate paleoflows towards NW whereas aeolian palecurrents of the Três Barras Formation show paleowinds towards SW. The depositional systems interpreted for the Areado Group were: braided river, alluvial fan, lacustrine, playa lake, fluvial-deltaic and aeolian. The combined analyses of facies and paleocurrents allowed a reliable paleogeographic reconstruction of the basin, with paleodip towards northwest, paleowinds towards south-southwest and source-area located at southeast. These results indicate that paleowinds were orthogonal to paleostream, but parallel to depositional strike of the basin. The interpreted depositional systems characterize a desert environment during the Abaeté sub-basin times. The association of dunes and wet interdunes followed by large scale dunes and dry interdunes suggests a decrease in humidity towards the top of the Três Barras Formation, with a dry aeolian system onlapping the basement. The observed decrease of humidity in Sanfranciscana Basin may reflect local or regional paleoclimatic changes during the opening of the South Atlantic, but this assumption is only tentative

Carbon and nitrogen stock and fluxes in coastal Atlantic Forest of southeast Brazil: potential impacts of climate change on biogeochemical functioning

The Atlantic Forest is one of the most important biomes of Brazil. Originally covering approximately 1.5 million of km(2), today this area has been reduced to 12% of its original size. Climate changes may alter the structure and the functioning of this tropical forest. Here we explore how increases in temperature and changes in precipitation distribution could affect dynamics of carbon and nitrogen in coastal Atlantic Forest of the southeast region of Brazil The main conclusion of this article is that the coastal Atlantic Forest has high stocks of carbon and nitrogen above ground, and especially, below ground. An increase in temperature may transform these forests from important carbon sinks to carbon sources by increasing loss of carbon and nitrogen to the atmosphere. However, this conclusion should be viewed with caution because it is based on limited information. Therefore, more studies are urgently needed to enable us to make more accurate predictions.

Levantamento ecológico rápido da ictiofauna e ictioplâncton na região do Arquipélago dos Alcatrazes, São Sebastião – SP, Brasil

Este trabalho teve como objetivo realizar um levantamento ecológico rápido da ictiofauna demersal, com ocorrência de pelágicos, e do ictioplâncton na região do Arquipélago dos Alcatrazes, São Sebastião (SP - Brasil), na Estação Ecológica Tupinambás. Foram realizadas 15 estações oceanográficas entre os dias 26 e 29 de setembro de 2011, a bordo do N/Pq. Soloncy Moura, do ICMBio. As amostras de ictiofauna foram coletadas com rede de arrasto de fundo com portas e para a coleta de ictioplâncton utilizou-se arrasto oblíquo com rede bongô. Os elasmobrânquios capturados foram pesados e medidos a bordo, sendo devolvidos vivos ao local de captura. Com relação à ictiofauna, foram registradas a ocorrência de 68 espécies, pertencentes a 32 famílias de actinopterígios e cinco de elasmobrânquios. Ctenosciaena gracilicirrhus, Pagrus pagrus, Prionotus punctatus, Porichthys porosissimus, Dactilopterus volitans, Stephanolepis hispidus e Cyclichthys spinosus representaram 81 % dos organismos coletados. Dentre as espécies capturadas, 42 % são de ocorrência comum, tanto ao litoral central (Santos) como às plataformas interna e média do estado de São Paulo. 25 % das espécies já haviam sido registradas em um levantamento, realizado em 1989. Observou-se a ocorrência de Rhinobatos sp., cujos exemplares não foram identificados por se tratar de juvenis de pequeno porte. Em relação ao ictioplâncton, foram identificadas seis famílias de actinopterígios. Sciaenidae e Engraulidae representaram 74 % de um total de 41 larvas. Também foram encontrados 203 ovos, sendo 64 % concentrados principalmente nas estações mais costeiras ou próximas das ilhas, localizadas entre o continente e a Ilha de São Sebastião e a de Alcatrazes. Foram também encontradas paralarvas de Loliginidae e Argonautidae. Este trabalho representou um levantamento rápido, no qual já se observa a importância da região, devido à alta diversidade de espécies e abundância de larvas, além da ocorrência de espécies ameaçadas de extinção.