Desempenho zootécnico e caracterização da linhagem germinativa de peixes diploides e triploides de lambari (Astyanax altiparanae)

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Estudo citogenético em aranhas (Mygalomorphae e Araneomorphae) com ênfase na evolução dos genes de DNA ribossômico

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Mecanismos de diferenciação cromossômica em besouros da subfamília Cassidinae s.l. (Polyphaga, Chrysomelidae)

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Esttrutura cromossômica e caracterização cariotípica no gênero Characidium (Teleostei, Characiformes, Crenuchidae)

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

The Chromosomal Complement of the Yellow-Cheeked Vole

The karyotype of Microtus xanthognathus (Leach) is described, based on material from one female and one male vole. The diploid chromosomal number was found to be 54, and the fundamental number 62. The metacentric X-chromosome was of medium size and averaged 6.6% of the haploid complement. The designated Y-chromosome was near acrocentric. The specific distinction of M. xanthognathus and Microtus chrotorrhinus (Miller) was confirmed by the recognition of major differences in karyotype and differences in fundamental number. The distributional history of M. xanthognathus is briefly discussed.

Observations on Chromosomes of Dicrostonyx torquatus stevensoni Nelson and Chromosomal Diversity in Varying Lemmings = Untersuchungen an den Chromosomen von Dicrostonyx torquatus stevensoni Nelson und chromosomale Unterschiede bei Halsbandlemmingen

English abstract: The cytogenetic characteristics of the varying lemming, Dicrostonyx torquatus stevensoni, (2n = 34), were investigated, and diploid chromosomal numbers were reported for four other nominal subspecies (exsul, nelsoni, richardsoni, and rubricatus) of the torquatus-group in North America. The diploid complements ranged from 30 to 44 chromosomes, and the fundamental number from 50 to 55. Chromosomal polymorphism was observed in all forms. In cross-breeding experiments, the mating of F1 progeny was not productive. The findings support the zoogeographic concept that populations of Dicrostonyx became fragmented or displaced southward during Würm time, with relict stocks persisting in unglaciated refugia or periglacial tundra. Speciation in the isolates led to chromosomal evolution, with the result that populations spreading from refugia in post-glacial time are reproductively isolated. The torquatus-group in North America appears to be a superspecies. German title: Untersuchungen an den Chromosomen von Dicrostonyx torquatus stevensoni Nelson und chromosomale Unterschiede bei Halsbandlemmingen German abstract: Die cytogenetischen Merkmale des Halsbandlemmings, Dicrostonyx torquatus stevensoni, (2n = 34) wurden eingehend untersucht, und für vier andere nordamerikanische Unterarten der torquatus-Gruppe wurden die somatischen Chromosomensätze festgestellt. Die Chromosomenzahl der untersuchten Populationen schwankte zwischen 30 und 44, der NF (Nombre Fondamental) zwischen 50 und 55. Zuchttiere der verschiedenen Populationen wurden erfolgreich gekreuzt, aber Sterilität der F1 Unterartbastarde war typisch. Die Halsbandlemminge wiesen Karyotypenverschiedenheiten auf, die sich durch Variationen des Robertsonschen Typus, Deletionen oder möglicherweise durch perizentrische Inversionen erklären. Die Ergebnisse sprechen dafür, daß das ursprüngliche Verbreitungsgebiet von Dicrostonyx in Nordamerika durch die letzte (Würm) Vereisung getrennt wurde, und daß die Reliktpopulationen die letzte Glazial-Phase in eisfreien Refugien oder in periglazialer Tundra überlebten, wo Karyotypevolution durch lokale Anpassungsbedürfnisse gefördert wurde. Die in der Postglazialzeit aus den Refugien sich verbreitenden Populationen von Dicrostonyx scheinen reproduktiv isoliert zu sein. Die torquatus-Gruppe in Nordamerika gilt also als Superspecies.

Cytogenic Evidence for the Specific Distinction of an Alaskan Marmot, Marmota broweri Hall and Gilmore (Mammalia: Sciuridae)

Cytogenetic studies based upon somatic cells (bone marrow) have disclosed that the marmot hitherto designated Marmota caligata broweri Hall and Gilmore, occurring in the Brooks Range of Arctic Alaska, differs from M. c. caligata (Eschscholtz) in number of chromosomes (2n=36 as compared with 2n=42 in M. caligata) and in proportions of chromosomal types. Typical karyograms for the two species are presented. It is concluded that the Brooks Range marmot is specifically distinct from M. caligata, the applicable name being Marmota broweri Hall and Gilmore. Also determined were diploid chromosome numbers for two other Nearctic species of marmots, M. flaviventris (Audubon and Bachman), with 42, and M. olympus (Merriam), with 40. It is suggested that M. broweri survived the last (Wisconsin) glaciations in the amphi-Beringian refugium, and that its closest affinities may be with one of the Eurasian species of Marmota.

Esttrutura cromossômica e caracterização cariotípica no gênero Characidium (Teleostei, Characiformes, Crenuchidae)

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

A new karyotype for the spiny rat Clyomys laticeps (Thomas, 1909) (Rodentia, Echimyidae) from Central Brazil

Clyomys Thomas, 1916 is a semifossorial rodent genus of spiny rats represented by only one species, C. laticeps, which inhabits the tropical savannas and grasslands of central Brazil and eastern Paraguay. Here we describe a new karyotype of C. laticeps found in populations of Emas National Park, Goias state, Brazil. The four analyzed specimens had a diploid number (2n) of 32 and a fundamental autosome number (FN) of 54. Cytogenetic data include conventional staining, CBG and GTG-banding. The karyotype presents 12 meta/submetacentric pairs (1 to 12) and 3 pairs of acrocentrics (13 to 15) with gradual decrease in size. The X chromosome is a medium submetacentric and the Y is a medium acrocentric. The semifossorial habits together with habitat specificity could have contributed to the karyological variations found on this genus.

Whole-genome sequencing of the efficient industrial fuel-ethanol fermentative Saccharomyces cerevisiae strain CAT-1

The Saccharomyces cerevisiae strains widely used for industrial fuel-ethanol production have been developed by selection, but their underlying beneficial genetic polymorphisms remain unknown. Here, we report the draft whole-genome sequence of the S. cerevisiae strain CAT-1, which is a dominant fuel-ethanol fermentative strain from the sugarcane industry in Brazil. Our results indicate that strain CAT-1 is a highly heterozygous diploid yeast strain, and the similar to 12-Mb genome of CAT-1, when compared with the reference S228c genome, contains similar to 36,000 homozygous and similar to 30,000 heterozygous single nucleotide polymorphisms, exhibiting an uneven distribution among chromosomes due to large genomic regions of loss of heterozygosity (LOH). In total, 58 % of the 6,652 predicted protein-coding genes of the CAT-1 genome constitute different alleles when compared with the genes present in the reference S288c genome. The CAT-1 genome contains a reduced number of transposable elements, as well as several gene deletions and duplications, especially at telomeric regions, some correlated with several of the physiological characteristics of this industrial fuel-ethanol strain. Phylogenetic analyses revealed that some genes were likely associated with traits important for bioethanol production. Identifying and characterizing the allelic variations controlling traits relevant to industrial fermentation should provide the basis for a forward genetics approach for developing better fermenting yeast strains.

Regeneration and characterization of somatic hybrids combining sweet orange and mandarin/mandarin hybrid cultivars for citrus scion improvement

Protoplast fusion between sweet orange and mandarin/mandarin hybrids scion cultivars was performed following the model "diploid embryogenic callus protoplast + diploid mesophyll-derived protoplast". Protoplasts were isolated from embryogenic calli of 'Pera' and 'Westin' sweet orange cultivars (Citrus sinensis) and from young leaves of 'Fremont', Nules', and 'Thomas' mandarins (C. reticulata), and 'Nova' tangelo [C. reticulata x (C. paradisi x C. reticulata)]. The regenerated plants were characterized based on their leaf morphology (thickness), ploidy level, and simple sequence repeat (SSR) molecular markers. Plants were successfully generated only when 'Pera' sweet orange was used as the embryogenic parent. Fifteen plants were regenerated being 7 tetraploid and 8 diploid. Based on SSR molecular markers analyses all 7 tetraploid regenerated plants revealed to be allotetraploids (somatic hybrids), including 2 from the combination of 'Pera' sweet orange + 'Fremont' mandarin, 3 'Pera' sweet orange + 'Nules' mandarin, and 2 'Pera' sweet orange + 'Nova' tangelo, and all the diploid regenerated plants showed the 'Pera' sweet orange marker profile. Somatic hybrids were inoculated with Alternaria alternata and no disease symptoms were detected 96 h post-inoculation. This hybrid material has the potential to be used as a tetraploid parent in interploid crosses for citrus scion breeding.

The effect of ploidy on the fatty acid profile during the reproductive cycle of female rainbow trout (Oncorhynchus mykiss)

Rainbow trout Oncorhynchus mykiss triploids are regularly produced in fish farms to improve growth because the triploid females do not develop ovaries during the reproductive cycle. In this study, the tissue fatty acid allocations in triploid and diploid females were compared during the reproductive cycle to determine whether the ploidy influences the fatty acid profile of fish produced in aquaculture. The ovaries, liver, and white muscle fatty acid contents of diploid and triploid females were analyzed during the reproductive cycle. Diploid females tend to accumulate more polyunsaturated fatty acids than triploids during some phases of the reproductive cycle, and this profile was compensated by an increase in saturated and monounsaturated fatty acids in triploid females. Arachidonic acid (C20:4n6) was the main n6 polyunsaturated fatty acid in the ovaries of diploid females during the most advanced phases of the reproductive cycle, and docosahexaenoic acid (C22:6n3) was the main n3 polyunsaturated fatty acid. In triploid females, the percentage of both of these polyunsaturated fatty acids was lower than in diploid females during the most advanced phases of the reproductive cycle. In general, the lack of ovary development altered the hepatic synthesis of some fatty acids, mainly monounsaturated and polyunsaturated fatty acids, decreasing the content of the main fatty acids in the white muscle and, consequently, the mobilization of these specific fatty acids to the ovaries.

Cytogenetic and molecular analyses in troglobitic and epigean species of Pimelodella (Siluriformes: Heptapteridae) from Brazil

Samples from seven different locations of the genus Pimelodella were genetically examined, two caves (exclusively subterranean, upper Tocantins River and Sao Francisco River) and five epigean (from upper Parana River basin). Cytogenetic analyses revealed the same diploid number (2n=46) for all species besides similarities in both number and location of nucleolar organizer regions and C bands. FISH with 5S rDNA probes and CMA(3) staining indicated significant differences among the studied species. Application of PCR-RFLP in ATPase 6 and 8 mitochondrial genes allowed building a minimum evolution phenogram identifying the close evolutionary relationship among groups. Both chromosomal and molecular data were useful to infer the relationships among studied Pimelodella species.

Genetic diversity and population structure of Musa accessions in ex situ conservation

Abstract Background Banana cultivars are mostly derived from hybridization between wild diploid subspecies of Musa acuminata (A genome) and M. balbisiana (B genome), and they exhibit various levels of ploidy and genomic constitution. The Embrapa ex situ Musa collection contains over 220 accessions, of which only a few have been genetically characterized. Knowledge regarding the genetic relationships and diversity between modern cultivars and wild relatives would assist in conservation and breeding strategies. Our objectives were to determine the genomic constitution based on Internal Transcribed Spacer (ITS) regions polymorphism and the ploidy of all accessions by flow cytometry and to investigate the population structure of the collection using Simple Sequence Repeat (SSR) loci as co-dominant markers based on Structure software, not previously performed in Musa. Results From the 221 accessions analyzed by flow cytometry, the correct ploidy was confirmed or established for 212 (95.9%), whereas digestion of the ITS region confirmed the genomic constitution of 209 (94.6%). Neighbor-joining clustering analysis derived from SSR binary data allowed the detection of two major groups, essentially distinguished by the presence or absence of the B genome, while subgroups were formed according to the genomic composition and commercial classification. The co-dominant nature of SSR was explored to analyze the structure of the population based on a Bayesian approach, detecting 21 subpopulations. Most of the subpopulations were in agreement with the clustering analysis. Conclusions The data generated by flow cytometry, ITS and SSR supported the hypothesis about the occurrence of homeologue recombination between A and B genomes, leading to discrepancies in the number of sets or portions from each parental genome. These phenomenons have been largely disregarded in the evolution of banana, as the “single-step domestication” hypothesis had long predominated. These findings will have an impact in future breeding approaches. Structure analysis enabled the efficient detection of ancestry of recently developed tetraploid hybrids by breeding programs, and for some triploids. However, for the main commercial subgroups, Structure appeared to be less efficient to detect the ancestry in diploid groups, possibly due to sampling restrictions. The possibility of inferring the membership among accessions to correct the effects of genetic structure opens possibilities for its use in marker-assisted selection by association mapping.

Entstehung und Diversifizierung der mittel- und westeuropäischen Salicornia-Arten

HintergrundrnDie hygrohalophytische Gattung Salicornia ist in Mittel- und Westeuropa durch vier nah verwandte, sympatrisch vorkommende Arten vertreten. Es handelt sich um die zwei tetraploiden Arten S. procumbens und S. stricta und die diploiden Arten S. europaea und S. ramosissima. Morphologisch lassen sich die Arten zwar nur schwer voneinander unterscheiden, die morphologische Variation ist aber wiederum so hoch, dass mehrere distinkte Arten/Morphotypen unterschieden werden können. Bezüglich ihrer Verteilung im hochdynamischen Lebensraum Salzwiese findet man die verschiedenen Arten/Morphotypen in überlappenden Bereichen des Habitats. Ihr relativ vorhersagbares Auftreten entlang eines ökologischen Gradienten innerhalb ihres Lebensraumes scheint jedoch für eine ökologische Differenzierung der verschiedenen Arten/Morphotypen zu sprechen. Aufgrund des sympatrischen Vorkommens der scheinbar ökologisch und morphologisch differenzierten Morphotypen stellt sich die Frage, durch welche Prozesse diese entstanden sein könnten (genetische und ökologische Differenzierung) aber auch welche Prozesse die dauerhafte Koexistenz der Arten (reproduktive Isolationsmechanismen) aufrechterhalten.rnZielsetzungrnZiel dieser Arbeit war es, die Entstehung und Diversifizierung der mittel- und westeuropäischen Salicornia-Arten anhand von molekulargenetischen, ökologischen und reproduktionsbiologischen Methoden zu untersuchen.rnMethodenrnAnhand einer AFLP-Fragmentanalyse mit 89 Herkünften aus Großbritannien, Frankreich und Deutschland wurden molekulare Phylogenien erstellt sowie eine Hauptkomponenten- und Clusteranalyse durchgeführt. Um die ökologische Differenzierung und phänotypische Plastizität der vier Arten/Morphotypen zu untersuchen wurde ein reziprokes Transplantationsexperiment durchgeführt. Um die reproduktiven Isolationsmechanismen der Arten/Morphotypen zu untersuchen, wurden verschiedene Beobachtungen und Experimente durchgeführt.rnErgebnissernDie molekularen Analysen konnten zwar die beiden Artengruppen (Ploidiestufen) trennen, lieferten aber innerhalb dieser weder ein taxonomisches noch ein geographisches Signal. Akzessionen mit identischer Morphologie aus der gleichen Population verteilten sich in den Analysen in verschiedene genetische Cluster. Identische Morphotypen aus verschiedenen geographischen Regionen gruppieren teilweise zusammen. Das Transplantationsexperiment zeigte für die beiden tetraploiden Arten S. procumbens und S. stricta eine deutliche ökologische Differenzierung, bei S. procumbens in Form von verminderter Fitness und einer beschleunigten Phänologie, bei S. stricta nur in Form einer veränderten Phänologie. Bezüglich der Plastizität zeigten beide tetraploiden Arten eine konstante Morphologie. Die beiden diploiden Taxa S. europaea und S. ramosissima zeigten weder eine klare ökologische Differenzierung noch eine konstante Morphologie. Bezüglich der Reproduktionsbiologie konnte bestätigt werden, dass Selbstung bei allen Taxa der hauptsächliche Reproduktionsmodus ist. Bei den tetraploiden Taxa zeigte sich zwar ein geringes Maß an Fremdbefruchtung, bei den diploiden Taxa führen dagegen morphologische Besonderheiten zu hochgradiger Selbstung.rnRésumérnDie in Mittel- und Westeuropa vorkommenden Salicornia-Arten stellen keine evolutionären Einheiten dar. Die beiden tetraploiden Taxa sollten auf Grund ihrer parallelen Entstehung und ökologischen Differenzierung als Ökotypen angesprochen werden. Beide Ökotypen weisen ein hohes Ausbreitungspotential aus und persistieren als Inzuchtlinien mit geringem Anteil an Fremdbestäubung. Die diploiden Taxa sind weder ökologisch differenziert noch morphologisch stabil und sollten deshalb als nur ein morphologisch sehr variables, aus zahlreichen weitverbreiteten Inzuchtlinien bestehendes Taxon angesehen werden.