CLONING AND QUANTITATIVE ANALYSIS OF THE CARBONIC ANHYDRASE GENE FROM PORPHYRA YEZOENSIS

Carbonic anhydrase (CA), an enzyme that catalyzes the interconversion of CO2 and HCO3-, has a critical role in inorganic carbon acquisition in many kingdoms, including animals, plants, and bacteria. In this study, the full-length cDNA of the CA gene from Porphyra yezoensis Ueda (denoted as PyCA) was cloned by using an expressed sequence tag (EST) and rapid amplification of cDNA ends (RACE). The nucleotide sequence of PyCA consists of 1,153 bp, including a 5' untranslated region (UTR) of 177 bp, a 3' UTR of 151 bp, and an open reading frame (ORF) of 825 bp that can be translated into a 274-amino-acid putative peptide with a molecular mass (M) of 29.8 kDa and putative isoelectric point (pI) of 8.51. The predicted polypeptide has significant homology to the beta-CA from bacteria and unicellular algae, such as Porphyridium purpureum. The mRNA in filamentous thalli, leafy thalli, and conchospores was examined, respectively, by real-time fluorescent quantitative PCR (qPCR), and the levels of PyCA are different at different stages of the life cycle. The lowest level of mRNA was observed in leafy thalli, and the level in filamentous thalli and in the conchospores was 4-fold higher and 10-fold higher, respectively.

Cflec-4, a multidomain C-type lectin involved in immune defense of Zhikong scallop Chlamys farreri

C-type lectins are a superfamily of carbohydrate-recognition proteins which play crucial roles in the innate immunity. In this study, a novel multidomain C-type lectin gene from scallop Chlamys farreri (designated as Cflec-4) was cloned by RACE approach based on EST analysis. The full-length cDNA of Cflec-4 was of 2086 bp. The open reading frame was of 1830 bp and encoded a polypeptide of 609 amino acids, including a signal sequence and four dissimilar carbohydrate-recognition domains (CRDs). The deduced amino acid sequence of CflecA shared high similarities to other C-type lectin family members. The phylogenetic analysis revealed the divergence between the three N-terminal CRDs and the C-terminal one, suggesting that the four CRDs in Cflec-4 originated by repeated duplication of different primordial CRD. The potential tertiary structure of each CRD in Cflec-4 was typical double-loop structure with Ca2+-binding site 2 in the long loop region and two conserved disulfide bridges at the bases of the loops. The tissue distribution of Cflec-4 mRNA was examined by fluorescent quantitative real-time PCR. In the healthy scallops, the Cflec-4 transcripts could be only detected in gonad and hepatopancreas, whereas in the Listonella anguillarum challenged scallops, it could be also detected in hemocytes. These results collectively suggested that CflecA was involved in the immune defense of scallop against pathogen infection and provided new insight into the evolution of C-type lectin superfamily. (C) 2009 Elsevier Ltd. All rights reserved.

Cloning and characterization of a novel C-type lectin gene from shrimp Litopenaeus vannamei

In invertebrates, C-type lectins play crucial roles in innate immunity responses by mediating the recognition of host cells to pathogens and clearing microinvaders, which interact with carbohydrates and function as pattern recognition receptors (PRRs). A novel C-type lectin gene (LvLec) cDNA was cloned from hemocytes of Litopenaeus vannamei by expressed sequence tag (EST) and rapid amplification of cDNA ends (RACE) PCR. The full-length cDNA of LvLec was of 618 bp, consisting of a 5'-terminal untranslated region (UTR) of 60 bp and a 3'-UTR of 87 bp with a poly (A) tail. The deduced amino acid sequence of LvLec possessed all conserved features critical for the fundamental structure, such as the four cysteine residues (Cys(53), Cys(128), Cys(144), Cys(152)) involved in the formation of disulfides bridges and the potential Ca2+/carbohydrate-binding sites. The high similarity and the close phylogenetic relationship of LvLec shared with C-type lectins from vertebrates and invertebrates. The structural features of LvLec indicated that it was an invertebrate counterpart of the C-type lectin family. The cDNA fragment encoding the mature peptide of LvLec was recombined and expressed in Escherichia coli BL21(DE3)-pLysS. The recombinant protein (rLvLec) could agglutinate bacteria E. coli JM109 depending on Ca2+, and the agglutination could be inhibited by mannose and EDTA. These results indicated that LvLec was a new member of C-type lectin family and involved in the immune defence response to Gram negative bacteria in Litopenaeus vannamei. (C) 2008 Elsevier Ltd. All rights reserved.

Identification of archaeon-producing hyperthermophilic alpha-amylase and characterization of the alpha-amylase

The extremely thermophilic anaerobic archaeon strain, HJ21, was isolated from a deep-sea hydrothermal vent, could produce hyperthermophilic alpha-amylase, and later was identified as Thermococcus from morphological, biochemical, and physiological characteristics and the 16S ribosomal RNA gene sequence. The extracellular thermostable alpha-amylase produced by strain HJ21 exhibited maximal activity at pH 5.0. The enzyme was stable in a broad pH range from pH 5.0 to 9.0. The optimal temperature of alpha-amylase was observed at 95 degrees C. The half-life of the enzyme was 5 h at 90 degrees C. Over 40% and 30% of the enzyme activity remained after incubation at 100 degrees C for 2 and 3 h, respectively. The enzyme did not require Ca2+ for thermostability. This alpha-amylase gene was cloned, and its nucleotide sequence displayed an open reading frame of 1,374 bp, which encodes a protein of 457 amino acids. Analysis of the deduced amino acid sequence revealed that four homologous regions common in amylases were conserved in the HJ21 alpha-amylase. The molecular weight of the mature enzyme was calculated to be 51.4 kDa, which correlated well with the size of the purified enzyme as shown by the sodium dodecyl sulfate-polyacrylamide gel electrophoresis.

Cold event at 5 500 a BP recorded in mud sediments on the inner shelf of the East China Sea

A 700-year record (1.0-1.5 a resolution) of the East Asian winter monsoon (EAWM), based on grain-size analysis and AMS(14)C dating of Core EC2005 from the inner-shelf mud wedge of the East China Sea (ECS), was compared with the Dongge stalagmite delta O-18 record during the mid-Holocene. The upper muddy section of Core EC2005 has been formed mainly by suspended sediments derived from the Changjiang (Yangtze) River mouth since 7.3 ka BP. High precipitation and a strengthened EAWM might have played key roles in the high sedimentation rate (1 324-1 986 cm/ka) between 5.9-5.2 ka BP. The EAWM strengthened when the Asian summer monsoon weakened, especially around 5 500 a BP, which corresponded to a worldwide cold event. The EAWM during the mid-Holocene shows statistically significant solar periodicities at 62 and 11 a. The 5 500 a BP cold event might be resulted from orbital forcing and changes in solar activity.

Paleoenvironmental change in the middle Okinawa Trough since the last deglaciation: Evidence from the sedimentation rate and planktonic foraminiferal record

Well-dated, high-resolution records of planktonic foraminifera and oxygen isotopes from two sediment cores, A7 and E017, in the middle Okinawa Trough reveal strong and rapid millennial-scale climate changes since similar to 18 to 17 thousand years before present (kyr B.P.). Sedimentation rate shows a sudden drop at similar to 11.2 cal. kyr B.P. due to a rapid rise of sea level after the Younger Dryas (YD) and consequently submergence of the large continental shelf on the East China Sea (ECS) and the retreat of the estuary providing sediment to the basin. During the last deglaciation, the relative abundance of warm and cold species of planktonic foraminifera fluctuates strongly, consistent with the timing of sea surface temperature (SST) variations determined from Mg/Ca measurements of planktonic foraminifera from one of the two cores. These fluctuations are coeval with climate variation recorded in the Greenland ice cores and North Atlantic sediments, namely Heinrich event 1 (H1), Bolling-Allerod (B/A) and YD events. At about 9.4 kyr B.P., a sudden change in the relative abundance of shallow to deep planktonic species probably indicates a sudden strengthening of the Kuroshio Current in the Okinawa Trough, which was synchronous with a rapid sea-level rise at 9.5-9.2 kyr B.P. in the ECS, Yellow Sea (YS) and South China Sea (SCS). The abundance of planktonic foraminiferal species, together with Mg/Ca based SST, exhibits millennial-scale oscillations during the Holocene, with 7 cold events (at about 1.7, 2.3-4.6, 6.2, 7.3, 8.2, 9.6, 10.6 cal. kyr BP) superimposed on a Holocene warming trend. This Holocene trend, together with centennial-scale SST variations superimposed on the last deglacial trend, suggests that both high and low latitude influences affected the climatology of the Okinawa Trough. (c) 2006 Elsevier B.V. All rights reserved.

ICP-OES测定浮游有孔虫的Mg/Ca比值及其在SST分析中的应用

海洋是驱动大气环流的主要“引擎”，海表温度（SST）又是揭示海洋环境变化的重要参数。利用有孔虫Mg/Ca比值恢复SST具有较高精密度，是目前恢复SST较成功的方法之一。本论文旨在建立一套有效的有孔虫清洗方法和ICP-OES测试有孔虫Mg/Ca比值的分析方法。 文中分析了53份西菲律宾海区(N18°40.23′，E135°37.11′；水深3225m)表层沉积物中浮游有孔虫Globigerinoides ruber（白色）Mg/Ca比值。结合本研究区的特点，文中使用的清洗方法是有孔虫Mg/Ca比值测试常用的“Mg”清洗方法，主要是由以下步骤构成：①用超纯水和甲醇在超声波水浴中清洗，②显微镜下剔除深色硅酸盐颗粒，③用氧化试剂去除有机质(加入30%H2O2和0.1M NaOH溶液在90℃左右的沸水浴中加热)，④酸洗(250μl 0.001N HNO3 超声波水浴中清洗10S)。清洗干净的样品经超纯硝酸溶解成溶液后，利用电感耦合等离子体发射光谱(ICP-OES)对其进行Mg/Ca比值的分析测试。仪器操作条件如下：辅助气流量（Ar）为0.5L/min（0.5L/min-1.5L/min），雾化器压力为0.2Mpa（0-0.4Mpa），泵速为20rpm（0-125rpm），高频输出功率（RF）为1150W（750W-1500W），火焰高度为15.5mm（8-21mm），通过多次重复测量一组Mg/Ca=3.333mmol/mol的标准溶液，其Mg/Ca短期精密度<0.5%,长期精密度为1%。53份样品之间Mg/Ca比值的RSD为2.7%，利用Lea(2000)建立的太平洋地区浮游有孔虫G. ruber(白色)的Mg/Ca与SST的校正公式:Mg/Ca(mmol/mol) ＝0.30exp[0.089×SST(℃)]，得到本研究区的SST为28℃±0.3℃。

INVOLVEMENT OF CA(2+) SIGNALING PATHWAY DURING OOCYTE MATURATION OF THE NORTHERN QUAHOG MERCENARIA MERCENARIA

In many molluses, it has been found that Ca2+ signaling pathway is involved in the resumption of meiotic maturation in oocytes. To better understand the possible role of Ca2+ signaling pathway in regulating meiotic maturation in oocytes of the northern quahog Mercenaria mercenaria, free extracellular Ca2+, A23187 (calcium ionophore), verapamil (calcium channel blocker), and trifluoperazin (calmodulin antagonist) were used to incubate oocytes or serotonin-induced oocytes by pharmacological methods. Results show that extracellular Ca2+ (50 similar to 200 mM) and A23187 (1 similar to 10 mu M) can stimulate the meiotic maturation. In addition, verapamil (1 similar to 100 mu M) and trifluoperazin (10 similar to 1,000 mu M) could inhibit serotonin-induced oocyte maturation. Therefore, Ca2+ is essential for the reinitiation of meiotic maturation in oocytes of the northern quahog. Moreover, an increase i [Ca2+]i can promote meiotic maturation.

低氧对高原鼠兔肝细胞内质网和心肌肌浆网Ca~(2+)泵的影响

模拟高原低氧条件研究高原鼠兔肝细胞内质网(Endoplasmic reticulum , ER ) 和心肌肌浆网(Sarcoplasmic reticulum , SR) 钙泵功能变化。实验设对照组(海拔2 300 m ) 和两个低氧实验组(模拟海拔5 000m 和7 000m )。24 h 急性低氧时, 海拔5 000 m 组高原鼠兔ER 的Ca2+ 泵活性无变化, 海拔7 000 m 组高原鼠兔ER Ca2+泵活性下降29102%。7 d 亚急性低氧时高原鼠兔SR 的Ca2+泵活性无显著变化。高原鼠兔ER 的Ca2+泵活性在海拔5 000 m 组和7 000 m 组分别升高32.50% 和33.33%。25 d 慢性低氧时高原鼠兔ER , SR 的Ca2+ 泵活性均无显著变化.表明: 急性低氧对Ca2+泵功能有抑制作用, 低氧7 d 后抑制缓解, 至25 d 低氧时趋于恢复。

利用BP神经网络实现三维物体姿态的测定

本文利用BP(Back-Propagation)人工神经网络对三维物体的姿态测定进行了研究。姿态测定一直缺少通用而实际的方法,人工神经网络由于具有强大的自组织、自适应学习能力,迅速的并行信息处理能力,可望解决这个问题。但现有BP算法存在训练慢和易陷入局部最小两个问题.本文提出的级联形式网络结构,使BP网络的训练速度大为提高,陷入局部最小的可能性大为降低。利用这种级联结构对飞机模型姿态测定,取得了较好的实验结果。

基于粗糙集-BP神经网络的发动机故障诊断

由于发动机光谱分析监控数据中磨损微粒种类过多,如果将这些微粒信息直接作为神经网络的输入,则存在输入层神经元过多、网络结构复杂等诸多问题。本文将粗糙集引入到发动机故障诊断中来,利用粗糙集在属性约简方面的优势,删除冗余磨损微粒,提取出重要磨损微粒,并将其作为BP神经网络的输入,建立发动机故障诊断模型。该方法降低输入层的神经元个数,简化了网络结构,缩短网络训练时间,并且由于剔除了冗余磨损微粒,减少了由该部分微粒信息不准确而带来的误差,有效提高了故障诊断的精确度。最后通过算例分析验证了相关算法和诊断模型的准确性和有效性。

基于改进的模糊C均值的BP分类器设计

提出了一种基于改进模糊C均值的BP神经网络分类器的设计,通过改进的模糊C均值算法对大量的数据进行聚类划分,然后设计BP神经网络对划分后的数据进行训练和测试,最后由计算机进行综合判断.试验证明该分类器是有效的,可以对高速公路车辆的车型进行迅速判别.

岱海岩芯沉积的粒度组成与湖区全新世降水变化历史

Sediment cores DH99a and DH99b recovered in the central part of Daihai Lake in north-central China were analysed at 2- to 4-crn intervals for grain-size distribution. Grain-size distributions of the lake sediments are inferred to be a proxy for past changes in East Asian monsoon precipitation, such that greater silt-size percentage and higher median grain size reflect increased monsoonal precipitation rates. The grain-size record of Daihai Lake sediments spanning the last ca 11,000 yr indicates that the monsoonal precipitation in the lake region can be divided into three stages: the Early, Middle and Late Holocene. During the Early Holocene before ca 7900 cal yr BP, the median grain size (Md) and the silt-fraction content were relatively low and constant, suggesting relatively low precipitation over the lake region. The Middle Holocene between ca 7900 and 3100 cal yr BP was marked by intensified and highly variable monsoonal precipitation, as indicated by high and variable Md values and silt contents of the lake sediments. During this period, average precipitation rate gradually increased from ca 7900 to 6900 cal yr BP, displayed intense oscillations between ca 6900 and 4400 cal yr BP, and exhibited a decreasing trend while fluctuating from ca 4400 to 3100 cal yr BP Although generally high during the Middle Holocene, both the Md and the silt content assumed distinctly low values at the short intervals of ca 6500-6400, 6000-5900, 5700-5600, 4400-4200 cal yr BP, implying that monsoonal precipitation might have been significantly reduced during these intervals. During the Late Holocene since ca 3100 cal yr BP, grain-size values suggest that precipitation decreased. However, during the Late Holocene, relatively higher Md values and silt contents occurring between ca 1700 to 1000 cal yr BP may denote an intensification of hydrological cycles in the lake area. Changes in the East Asian monsoonal precipitation were not only directly linked with the changing seasonality of solar insolation resulting from progressive changes in the Earth's orbital parameters, but also may have been closely related to variations in the temperature and size of the Western Pacific Warm Pool, in the intensity of the El Nino-Southern Oscillation, and in the path and strength of the North Equatorial Current in the western Pacific.

生物壳体Sr／Ca、Mg／Ca、^87Sr／^86Sr比值在恢复古气候、古环境中的应用—以小渡口剖面为例

生物壳体的Sr/Ca、Mg/Ca比值能反映其沉积水体的Sr/Ca、Mg/Ca比值，在一定条件下反映水体的盐度、温度，并分别与宿生水体的盐度、温度呈正比关系。生物壳体的^87Sr/^86Sr比值是恢复盆地古水文条件的一种重要手段。本文以著名的泥河湾盆地小渡口剖面的第28层为实例，力图通过对有孔虫、介形虫、腹足类生物壳体Sr/Ca、Mg/Ca比值与^87Sr/^86Sr比值的对比研究，并结合前人所作的中更新世古地理特征研究，来恢复生物壳体沉积时泥河古湖水的温度、盐度，进而进行古气候、古环境的恢复。研究结果表明：在0.97-0.94Ma间，古泥河湾湖为一陆相湖泊，湖水的温度、盐度变化趋势相吻合，均呈低－高－低的演化特征，可能对应着盆地水体的扩展－退缩－扩展变化。其中，在0.96-0.95Ma间，古泥河湾湖具有较高的温度、盐度特征。生物壳体的Sr/Ca、Mg/Ca比值能反映其沉积水体的Sr/Ca、Mg/Ca比值，在一定条件下反映水体的盐度、温度，并分别与宿生水体的盐度、温度呈正比关系。生物壳体的^87Sr/^86Sr比值是恢复盆地古水文条件的一种重要手段。本文以著名的泥河湾盆地小渡口剖面的第28层为实例，力图通过对有孔虫、介形虫、腹足类生物壳体Sr/Ca、Mg/Ca比值与^87Sr/^86Sr比值的对比研究，并结合前人所作的中更新世古地理特征研究，来恢复生物壳体沉积时泥河古湖水的温度、盐度，进而进行古气候、古环境的恢复。研究结果表明：在0.97-0.94Ma间，古泥河湾湖为一陆相湖泊，湖水的温度、盐度变化趋势相吻合，均呈低－高－低的演化特征，可能对应着盆地水体的扩展－退缩－扩展变化。其中，在0.96-0.95Ma间，古泥河湾湖具有较高的温度、盐度特征。