Gene expression profiling in gills of the great spider crab Hyas araneus in respond to ocean acidification and warming, supplementary data

Hypercapnia and elevated temperatures resulting from climate change may have adverse consequences for many marine organisms. While diverse physiological and ecological effects have been identified, changes in those molecular mechanisms, which shape the physiological phenotype of a species and limit its capacity to compensate, remain poorly understood. Here, we use global gene expression profiling through RNA-Sequencing to study the transcriptional responses to ocean acidification and warming in gills of the boreal spider crab Hyas araneus exposed medium-term (10 weeks) to intermediate (1,120 µatm) and high (1,960 µatm) PCO2 at different temperatures (5°C and 10°C). The analyses reveal shifts in steady state gene expression from control to intermediate and from intermediate to high CO2 exposures. At 5°C acid-base, energy metabolism and stress response related genes were upregulated at intermediate PCO2, whereas high PCO2 induced a relative reduction in expression to levels closer to controls. A similar pattern was found at elevated temperature (10°C). There was a strong coordination between acid-base, metabolic and stress-related processes. Hemolymph parameters at intermediate PCO2 indicate enhanced capacity in acid-base compensation potentially supported by upregulation of a V-ATPase. The likely enhanced energy demand might be met by the upregulation of the electron transport system (ETS), but may lead to increased oxidative stress reflected in upregulated antioxidant defense transcripts. These mechanisms were attenuated by high PCO2, possibly as a result of limited acid-base compensation and metabolic down-regulation. Our findings indicate a PCO2 dependent threshold beyond which compensation by acclimation fails progressively. They also indicate a limited ability of this stenoecious crustacean to compensate for the effects of ocean acidification with and without concomitant warming.

Magnetic properties and sand composition at DSDP Site 87-582 and Hole 87-583D

At Site 582, DSDP Leg 87, turbidites about 560 m thick were recovered from the floor of the Nankai Trough. A turbidite bed is typically composed of three subdivisions: a lower graded sand unit, an upper massive silt unit, and an uppermost Chondrites burrowed silt unit. The turbidites intercalate with bluish gray hemipelagic mud which apparently accumulated below the calcite compensation depth. In order to investigate the nature and provenance of the turbidites, we studied the grain orientation, based on magnetic fabric measurements and thin-section grain counting, and grain size, using a photo-extinction settling tube and detrital modal analysis. The following results were obtained: (1) grain orientation analysis indicates that the turbidity current transport parallels the trench axis, predominantly from the northeast; (2) Nankai Trough turbidites generally decrease in grain size to the southwest; (3) turbidite sands include skeletal remains indicative of fresh-water and shallow-marine environments; and (4) turbidites contain abundant volcanic components, and their composition is analogous to the sediments of the Fuji River-Suruga Bay area. Considering other evidence, such as physiography and geometry of trench fill, we conclude that the turbidites of Site 582 as well as Site 583 were derived predominantly from the mouth of Fuji River and were transported through the Suruga Trough to the Nankai Trough, a distance of some 700 km. This turbidite transport system has tectonic implications: (1) the filling of the Nankai Trough is the direct consequence of the Izu collision in Pliocene- Pleistocene times; (2) the accretion of trench fill at the trench inner slope observed in the Nankai Trough is controlled by collision tectonics; and (3) each event of turbidite deposition may be related to a Tokai mega-earthquake.