The quorum-sensing transcriptional regulator TraR requires its cognate signaling ligand for protein folding, protease resistance, and dimerization

Complexes between the quorum-sensing regulator TraR and its inducing ligand autoinducer (AAI) are soluble in Escherichia coli, whereas apo-TraR is almost completely insoluble. Here we show that the lack of soluble TraR is due in large part to rapid proteolysis, inasmuch as apo-TraR accumulated to high levels in an E. coli strain deficient in Clp and Lon proteases. In pulse labeling experiments, AAI protected TraR against proteolysis only when it was added before the radiolabel. This observation indicates that TraR proteins can productively bind AAI only during their own synthesis on polysomes, whereas fully synthesized apo-TraR proteins are not functional AAI receptors. Purified apo-TraR was rapidly degraded by trypsin to oligopeptides, whereas TraR–AAI complexes were more resistant to trypsin and were cleaved at discrete interdomain linkers, indicating that TraR requires AAI to attain its mature tertiary structure. TraR–AAI complexes eluted from a gel filtration column as dimers and bound DNA as dimers. In contrast, apo-TraR was monomeric, and incubation with AAI under a variety of conditions did not cause dimerization. We conclude that AAI is critical for the folding of nascent TraR protein into its mature tertiary structure and that full-length apo-TraR cannot productively bind AAI and is consequently targeted for rapid proteolysis.

Switch from Myc/Max to Mad1/Max binding and decrease in histone acetylation at the telomerase reverse transcriptase promoter during differentiation of HL60 cells

Recent evidence suggests that the Myc and Mad1 proteins are implicated in the regulation of the gene encoding the human telomerase reverse transcriptase (hTERT), the catalytic subunit of telomerase. We have analyzed the in vivo interaction between endogenous c-Myc and Mad1 proteins and the hTERT promoter in HL60 cells with the use of the chromatin immunoprecipitation assay. The E-boxes at the hTERT proximal promoter were occupied in vivo by c-Myc in exponentially proliferating HL60 cells but not in cells induced to differentiate by DMSO. In contrast, Mad1 protein was induced and bound to the hTERT promoter in differentiated HL60 cells. Concomitantly, the acetylation of the histones at the promoter was significantly reduced. These data suggest that the reciprocal E-box occupancy by c-Myc and Mad1 is responsible for activation and repression of the hTERT gene in proliferating and differentiated HL60 cells, respectively. Furthermore, the histone deacetylase inhibitor trichostatin A inhibited deacetylation of histones at the hTERT promoter and attenuated the repression of hTERT transcription during HL60 cell differentiation. In addition, trichostatin A treatment activated hTERT transcription in resting human lymphocytes and fibroblasts. Taken together, these results indicate that acetylation/deacetylation of histones is operative in the regulation of hTERT expression.

Accumulation rates and composition of organic matter in sediments off Peru

Deep-sea sediment samples from three Ocean Drilling Program (ODP) Leg 112 sites on the Peru continental margin were investigated, using a number of organic geochemical and organic petrographic techniques, for amounts and compositions of the organic matter preserved. Preliminary results include mass accumulation rates of organic carbon at Site 679 and characteristics of the organic facies for sediments from Sites 679, 681, and 684. Organic-carbon contents are high, with few exceptions. Particularly high values were determined in the Pliocene interval at Site 684 (4%-7.5%) and in the early Pliocene to Quaternary section of Hole 679D (2%-9%). Older sediments at this site have distinctively lower organic-carbon contents (0.2%-2.5%). Mass accumulation rates of organic matter at Site 679 are 0.02 to 0.07 g carbon/cm**2/k.y. for late Miocene to early Pliocene sediments and higher by a factor of 5 to 10 in the Quaternary sediments. The organic matter in all samples has a predominantly marine planktonic and bacterial origin, with minor terrigenous contribution. Organic particle sizes are strikingly small, so that only a minor portion is covered by visual maceral analysis. Molecular organic-geochemical data were obtained for nonaromatic hydrocarbons, aromatic hydrocarbons (including sulfur compounds), alcohols, ketones, esters, and carboxylic acids. Among the total extractable lipids, long-chain unsaturated ketones from Prymnesiophyte algae strongly predominate among the gas chromatography (GC) amenable components. Steroids are major constituents of the ketone and free- and bound-alcohol fractions. Perylene is the most abundant aromatic hydrocarbon, whereas in the nonaromatic hydrocarbon fractions, long-chain n-alkanes from higher land plants predominate, although the total terrigenous organic matter proportion in the sediments is small.

Alfabetic-order table ... altered and fitted with three figures /

Two tables mounted on boards and bound.

The archko volume, or, The archeological writings of the Sanhedrim and Talmuds of the Jews (intra secus) /

This work is considered a forgery by Dr. Montague R. James in his Apocryphal New Testament, Oxford, 1924, p. 90.

The new Hamlet, intermixed and interwoven with a revised version of Romeo and Juliet; the combination being modernized, rewritten and wrought out on new-discovered lines, as indicated under the light of the higher criticism by Wm. Hawley Smith and the Smith family, farmers. Printed from the original manuscript, with text in full, and as first produced when done in action by the Smiths, their own company, under the haw tree, on their farm, at the ticket, June 17, 1902.

"Done into a book, and bound in boards (no. 2 fencing) by and, at the barn, on the farm, by farmers."

Tullidge's quarterly magazine of Utah, her founders, her enterprises, and her civilization.

Issued and bound with v. 3: Tullidge, E.W. The history of Salt Lake City and its founders.

Catalogue of maps, plans and publications of the Topographical survey

The 1917 edition has title: List of maps and publications issued by the Topographical surveys branch and available for distribution.

A dictionary of the English language: in which the words are deduced from their originals, explained in their different meanings, and authorised by the names of the writers in whose works they are found.

Errors in printing: 2 leaves of "Preface to the folio edition" wrongly imposed and bound.

Reports of the Technical Industrial Disarmament Committees.

v. 1 issued separately as T.I.D.C. projects and bound without t.p. or table of contents.

A narrative of the controversy between the Rev. Jedidiah Morse, D.D. and the author /

Includes Some notice of the remarks on S. Higginson, Jun. contained in Dr. Morse's appeal to the publick, signed Stephen Higginson, Jun. and bound with a Review of Dr. Morse's "Appeal to the publick", principally with reference to that part of it which relates to Harvard College, by a friend of that college, signed An alumnus of Harvard.

The Journal of childhood and adolescence.

Vols. for Mar.-May 1901 published as v. 6, no. 9-10, v. 7, no. 1 (Mar.-May 1901) of The Child-study monthly & journal of adolescence, being paged in continuation of and bound with v. 6.

Submodular Optimization and Data Processing

Thesis (Ph.D.)--University of Washington, 2016-06

Constructing and evaluating alternative prediction models for identifying clinically relevant cases in an STD clinic

Thesis (Master's)--University of Washington, 2016-06

Optimization and Machine Learning Frameworks for Complex Network Analysis

Thesis (Ph.D.)--University of Washington, 2016-06