Study of the one dimensional and transient bioheat transfer equation: Multi-layer solution development and applications

: In this work we derive an analytical solution given by Bessel series to the transient and one-dimensional (1D) bioheat transfer equation in a multi-layer region with spatially dependent heat sources. Each region represents an independent biological tissue characterized by temperature-invariant physiological parameters and a linearly temperature dependent metabolic heat generation. Moreover, 1D Cartesian, cylindrical or spherical coordinates are used to define the geometry and temperature boundary conditions of first, second and third kinds are assumed at the inner and outer surfaces. We present two examples of clinical applications for the developed solution. In the first one, we investigate two different heat source terms to simulate the heating in a tumor and its surrounding tissue, induced during a magnetic fluid hyperthermia technique used for cancer treatment. To obtain an accurate analytical solution, we determine the error associated with the truncated Bessel series that defines the transient solution. In the second application, we explore the potential of this model to study the effect of different environmental conditions in a multi-layered human head model (brain, bone and scalp). The convective heat transfer effect of a large blood vessel located inside the brain is also investigated. The results are further compared with a numerical solution obtained by the Finite Element Method and computed with COMSOL Multi-physics v4.1 (c). (c) 2013 Elsevier Ltd. All rights reserved.

The contribution of multitemporal information from multispectral satellite images for automatic land cover classification at the national scale

Thesis submitted to the Instituto Superior de Estatística e Gestão de Informação da Universidade Nova de Lisboa in partial fulfillment of the requirements for the Degree of Doctor of Philosophy in Information Management – Geographic Information Systems

Internet Geography: New Spaces of Information

The objective of great investments in telecommunication networks is to approach economies and put an end to the asymmetries. The most isolated regions could be the beneficiaries of this new technological investments wave disseminating trough the territories. The new economic scenarios created by globalisation make high capacity backbones and coherent information society polity, two instruments that could change regions fate and launch them in to an economic development context. Technology could bring international projection to services or products and could be the differentiating element between a national and an international economic strategy. So, the networks and its fluxes are becoming two of the most important variables to the economies. Measuring and representing this new informational accessibility, mapping new communities, finding new patterns and localisation models, could be today’s challenge. In the physical and real space, location is defined by two or three geographical co-ordinates. In the network virtual space or in cyberspace, geography seems incapable to define location, because it doesn’t have a good model. Trying to solve the problem and based on geographical theories and concepts, new fields of study came to light. The Internet Geography, Cybergeography or Geography of Cyberspace are only three examples. In this paper and using Internet Geography and informational cartography, it was possible to observe and analyse the spacialisation of the Internet phenomenon trough the distribution of the IP addresses in the Portuguese territory. This work shows the great potential and applicability of this indicator to Internet dissemination and regional development studies. The Portuguese territory is seen in a completely new form: the IP address distribution of Country Code Top Level Domains (.pt) could show new regional hierarchies. The spatial concentration or dispersion of top level domains seems to be a good instrument to reflect the info-structural dynamic and economic development of a territory, especially at regional level.

Automatic Small Bowel Tumor Diagnosis by Using Multi-Scale Wavelet-Based Analysis in Wireless Capsule Endoscopy Images

BACKGROUND: Wireless capsule endoscopy has been introduced as an innovative, non-invasive diagnostic technique for evaluation of the gastrointestinal tract, reaching places where conventional endoscopy is unable to. However, the output of this technique is an 8 hours video, whose analysis by the expert physician is very time consuming. Thus, a computer assisted diagnosis tool to help the physicians to evaluate CE exams faster and more accurately is an important technical challenge and an excellent economical opportunity. METHOD: The set of features proposed in this paper to code textural information is based on statistical modeling of second order textural measures extracted from co-occurrence matrices. To cope with both joint and marginal non-Gaussianity of second order textural measures, higher order moments are used. These statistical moments are taken from the two-dimensional color-scale feature space, where two different scales are considered. Second and higher order moments of textural measures are computed from the co-occurrence matrices computed from images synthesized by the inverse wavelet transform of the wavelet transform containing only the selected scales for the three color channels. The dimensionality of the data is reduced by using Principal Component Analysis. RESULTS: The proposed textural features are then used as the input of a classifier based on artificial neural networks. Classification performances of 93.1% specificity and 93.9% sensitivity are achieved on real data. These promising results open the path towards a deeper study regarding the applicability of this algorithm in computer aided diagnosis systems to assist physicians in their clinical practice.

Prototype based clustering in high-dimensional feature spaces

...In dieser Arbeit untersuche ich den ”Fluch der Dimensionen” mittels dem Begriff der Distanzkonzentration. Ich zeige, dass dieser Effekt im Datenmodell mittels der paarweisen Kovarianzkoeffizienten der Randverteilungen beschrieben werden kann. Zusätzlich vergleiche ich 10 prototypbasierte Clusteralgorithmen mittels 800.000 Clusterergebnissen von künstlich erzeugten Datensätzen. Ich erforsche, wie und warum Clusteralgorithmen von der Anzahl der Merkmale beeinflusst werden. Mit den Clusterergebnissen untersuche ich außerdem, wie gut 5 der populärsten Clusterqualitätsmaße die tatsächliche Clusterqualität schätzen.

Harmonic active contours.

We propose a segmentation method based on the geometric representation of images as 2-D manifolds embedded in a higher dimensional space. The segmentation is formulated as a minimization problem, where the contours are described by a level set function and the objective functional corresponds to the surface of the image manifold. In this geometric framework, both data-fidelity and regularity terms of the segmentation are represented by a single functional that intrinsically aligns the gradients of the level set function with the gradients of the image and results in a segmentation criterion that exploits the directional information of image gradients to overcome image inhomogeneities and fragmented contours. The proposed formulation combines this robust alignment of gradients with attractive properties of previous methods developed in the same geometric framework: 1) the natural coupling of image channels proposed for anisotropic diffusion and 2) the ability of subjective surfaces to detect weak edges and close fragmented boundaries. The potential of such a geometric approach lies in the general definition of Riemannian manifolds, which naturally generalizes existing segmentation methods (the geodesic active contours, the active contours without edges, and the robust edge integrator) to higher dimensional spaces, non-flat images, and feature spaces. Our experiments show that the proposed technique improves the segmentation of multi-channel images, images subject to inhomogeneities, and images characterized by geometric structures like ridges or valleys.

The groups of Poincaré and Galilei in arbitrary dimensional spaces

In arbitrary dimensional spaces the Lie algebra of the Poincaré group is seen to be a subalgebra of the complex Galilei algebra, while the Galilei algebra is a subalgebra of Poincar algebra. The usual contraction of the Poincar to the Galilei group is seen to be equivalent to a certain coordinate transformation.

Accuracy and Precision of Head Motion Information in Multi-Channel Free Induction Decay Navigators for Magnetic Resonance Imaging.

Free induction decay (FID) navigators were found to qualitatively detect rigid-body head movements, yet it is unknown to what extent they can provide quantitative motion estimates. Here, we acquired FID navigators at different sampling rates and simultaneously measured head movements using a highly accurate optical motion tracking system. This strategy allowed us to estimate the accuracy and precision of FID navigators for quantification of rigid-body head movements. Five subjects were scanned with a 32-channel head coil array on a clinical 3T MR scanner during several resting and guided head movement periods. For each subject we trained a linear regression model based on FID navigator and optical motion tracking signals. FID-based motion model accuracy and precision was evaluated using cross-validation. FID-based prediction of rigid-body head motion was found to be with a mean translational and rotational error of 0.14±0.21 mm and 0.08±0.13(°) , respectively. Robust model training with sub-millimeter and sub-degree accuracy could be achieved using 100 data points with motion magnitudes of ±2 mm and ±1(°) for translation and rotation. The obtained linear models appeared to be subject-specific as inter-subject application of a "universal" FID-based motion model resulted in poor prediction accuracy. The results show that substantial rigid-body motion information is encoded in FID navigator signal time courses. Although, the applied method currently requires the simultaneous acquisition of FID signals and optical tracking data, the findings suggest that multi-channel FID navigators have a potential to complement existing tracking technologies for accurate rigid-body motion detection and correction in MRI.

Information transfer between large and small two-dimensional polyacrylamide gel electrophoresis.

To determine the feasibility of data transfer, an interlaboratory comparison was conducted on colon carcinoma cell line (DLD-1) proteins resolved by two-dimensional polyacrylamide gel electrophoresis either on small (6 x 7 cm) or large (16x18 cm) gels. The gels were silver-stained and scanned by laser densitometry, and the image obtained was analyzed using Melanie software. The number of spots detected was 1337+/-161 vs. 2382+/-176 for small vs. large format gels, respectively. After gel calibration using landmarks determined using pl and Mr markers, large- and small-format gels were matched and 712+/-36 proteins were found on both types of gels. Having performed accurate gel matching it was possible to acquire additional information after accessing a 2-D PAGE reference database (http://www.expasy.ch/ cgibin/map2/def?DLD1_HUMAN). Thus, the difference in gel size is not an obstacle for data transfer. This will facilitate exchanges between laboratories or consultation concerning existing databases.

Prognosemethode für das Schutzgut ‚Landschaft’ im Rahmen der Strategischen Umweltprüfung

Im Mittelpunkt der Dissertation stehen das Schutzgut ‚Landschaft’ sowie ‚Prognosemethoden in der Umweltprüfung’. Mit beiden Themenbereichen verbinden sich bereits heute ungelöste methodische Probleme, die mit der Umsetzung der Richtlinie zur Strategischen Umweltprüfung (SUP) zusätzlich komplexer und deren Lösung mithin anspruchsvoller werden. Dies hängt einerseits damit zusammen, dass eine gesetzeskonforme Gleichbehandlung aller Schutzgüter zunehmend eingefordert wird und gerade das Schutzgut ‚Landschaft’ in einer SUP methodisch besondere Aufmerksamkeit verlangt. Zum anderen führt die gängige planungsmethodische Diskussion allein nicht zu geeigneten Antworten auf o.g. Fragen, und es bedarf der Prüfung verschiedener Methodenbausteine, auch aus anderen Wissensgebieten, um – über ein eindimensionales Landschaftsverständnis einerseits und die bisher bekannten linearen Wirkungsprognosen andererseits hinaus gehend – mehrfach verknüpfte Prognoseschritte zur Anwendung in der SUP zu entwickeln, in denen das Schutzgut ‚Landschaft’ modellhaft für Bewertungsschritte nachvollziehbar abgebildet wird. Hierbei müssen entscheidungsrelevante Prognosezeiträume ebenso beachtet werden, wie in diesen Zeiträumen möglicherweise auftretende sekundäre, kumulative, synergetische, positive und negative Auswirkungen der zu beurteilenden Planung. Dieser Ziel- und Aufgabenstellung entsprechend erfolgt die theoretische Herangehensweise der Arbeit von zwei Seiten: 1. Die Funktionen und Stellung von Prognosen innerhalb der SUP wird erläutert (Kap. 2), und es wird der Frage nachgegangen, welche Anforderungen an Prognosemethoden zu stellen sind (Kap. 2.4) und welche Prognosemethoden in der SUP Verwendung finden bzw. finden können (Kap. 3). Der Schwerpunkt wird dabei auf die Anwendung der Szenariotechnik gelegt. 2. Es wird dargestellt wie Landschaft für Aufgaben der Landschaftsplanung und Umweltprüfung bisher üblicherweise erfasst und analysiert wird, um in Prognoseschritten handhabbar behandelt zu werden (Kap. 4). Beide Zugänge werden sodann zusammengeführt (Kap. 5), um am Beispiel einer Hochwasserschutzkonzeption im Rahmen der SUP Landschaftliche Prognosen zu erarbeiten. Die Prognose setzt methodisch mit der Beschreibung des zu verwendenden Landschaftsmodells und der Klärung des Modellzwecks ein. Bezugsbasis ist die Beschreibung des Charakters einzelner logisch hergeleiteter Landschaftseinheiten bzw. Landschaftsräume, die typisiert werden. Die Prognose selber unterscheidet zwischen der Abschätzung zu erwartender Landschaftsveränderungen im Sinne der ‚Status-quo-Prognose’ (einschließlich der Entwicklung von drei Szenarien möglicher Zukunftslandschaften bis 2030) und der Wirkungsabschätzungen verschiedener Maßnahmen bzw. Planungsalternativen und zwar zunächst raumunabhängig, und dann raumkonkret. Besondere Bedeutung bei den Wirkungsabschätzungen erhält die klare Trennung von Sach- und Wertebene, eine angemessene Visualisierung und die Dokumentation von Informationslücken und Unsicherheiten bei der Prognose. Diskutiert wird u.a. (Kap. 6) · die Bildung und Abgrenzung landschaftlicher Einheiten und Typen in Bezug zu der Aufgabe, landschaftliche Eigenart zu definieren und planerisch handhabbar und anwendbar zu bestimmen, · die Bedeutung angemessener Visualisierung zur Unterstützung von Beteiligungsverfahren und · die Bestimmung des so genannten ‚Raumwiderstandes’. Beigefügt sind zwei Karten des gesamten Bearbeitungsgebietes: Karte 1 „Landschaftstypen“, Karte 2 „Maßnahmentypen des Hochwasserschutzes mit möglichen Synergieeffekten für die Landschaft“.

Three-Dimensional Motion Estimation Using Shading Information in Multiple Frames

A new formulation for recovering the structure and motion parameters of a moving patch using both motion and shading information is presented. It is based on a new differential constraint equation (FICE) that links the spatiotemporal gradients of irradiance to the motion and structure parameters and the temporal variations of the surface shading. The FICE separates the contribution to the irradiance spatiotemporal gradients of the gradients due to texture from those due to shading and allows the FICE to be used for textured and textureless surface. The new approach, combining motion and shading information, leads directly to two different contributions: it can compensate for the effects of shading variations in recovering the shape and motion; and it can exploit the shading/illumination effects to recover motion and shape when they cannot be recovered without it. The FICE formulation is also extended to multiple frames.

Coordinated management of intelligent pervasive spaces

The content of this paper is a snapshot of a current project looking at producing a real-time sensor-based building assessment tool, and a system that personalises workspaces using multi-agent technology. Both systems derive physical environment information from a wireless sensor network that allows clients to subscribe to real-time sensed data. The principal ideologies behind this project are energy efficiency and well-being of occupants; in the context of leveraging the current state-of-the-art in agent technology, wireless sensor networks and building assessment systems to enable the optimisation and assessment of buildings. Participants of this project are from both industry (construction and research) and academia.

Co-ordinated management of intelligent pervasive spaces

The content of this paper is a snapshot of a current project looking at producing a real-time sensor-based building assessment tool, and a system that personalises work-spaces using multi-agent technology. Both systems derive physical environment information from a wireless sensor network that allows clients to subscribe to real-time sensed data. The principal ideologies behind this project are energy efficiency and well-being of occupants; in the context of leveraging the current state-of-the-art in agent technology, wireless sensor networks and building assessment systems to enable the optimisation and assessment of buildings. Participants of this project are from both industry (construction and research) and academia.