Some key concepts in fisheries research and management, with emphasis on Mozambique

Some basic concepts of fishery economics and management, and fish population dynamics are recalled, as presented during a course held at the Instituto de Investigaçāo Pesqueira from 23 February to 15 March 1988 in Maputo, Mozambique. Also, some basic elements of length-based stock assessment are reviewed, with emphasis on their implementation through the “Compleat Elefan" package, used extensively during this course, when the participants analyzed their data and wrote first draft of manuscripts incorporating the results of these analyses. Some problems relative to sampling and to seasonal growth oscillations are discussed with special reference to conditions in Mozambique.

Rotifera from Sri Lanka (Ceylon) 3. New species and records with a list of Rotifera recorded and their distribution in different habitats from Sri Lanka

In two previous papers, the Eurotatorian fauna of Sri Lanka has been systematically dealt with. Description of 104 species is given in the previous papers. In the present study an additional twenty-two species are described. Of these two are new. The composition of the Sri Lanka Rotifera is discussed in relation to the fauna of other parts of the world. The distribution of the species in different types of habitats is studied on the basis of samples. A complete list of all Rotifera recorded from Sri Lanka so far is given for easy reference. Examples of localities where species were collected are also given.

Association of haplotypes spanning PDZ-GEF2, LOC728637 and ACSL6 with schizophrenia in Han Chinese

Background: Schizophrenia is a complex genetic disorder caused by multiple genetic and environmental factors. Several lines of linkage and association studies have repeatedly suggested that the chromosome 5q22-33 region is implicated in the aetiology of s

Culture feasibility of silver barb (Barbodes gonionotus Bleeker) and GIFT with shrimp (Penaeus monodon Feb.) in brackishwater pond

An experiment was conducted to understand the culture feasibility of sliver barb (Barbodes gonionotus) and GIFT (Genetically Improved Farmed Tilapia) with shrimp (Penaeus monodon). There were three different treatment (T) combinations: (T1) shrimp (10,000/ha) and silver barb (10,000/ha), (T2) shrimp (10,000/ha) and GIFT (10,000/ha), and (T3) shrimp (10,000/ha). Shrimp, after 120 days of culture, attained an average weight of 23.77g in T1, followed by T3 (23.70g). The highest average weight was recorded in T2 (24.93g). The specific growth rate (SGR) of shrimp was 6.9%, 6.94% and 6.9% for T1 T2 and T3, respectively. The SGR for the B. gonionotus and GIFT was 2.56% and 4.26%, respectively. The final weight of silver barb was 69.75g and that of GIFT was 161.83g. Survival of shrimp was higher (65.50%) in T2, followed by T3 (59.97%) and T1 (57.03%). Survival rate of silver barb (58.10%) was lower compared to that of GIFT (78.43%). Sporadic and scanty mortality of silver barb with a symptom of blind-red-protruded eye, swollen belly and body lesion was observed. Production of shrimp was higher of 284.05 kg/ha in monoculture, followed 162.47 kg/ha in concurrent culture with silver barb and 136.77 kg/ha culture with GIFT. In spite of similar stocking density of B. gonionotus and GIFT in T1 and T2, respectively, the production of GIFT was higher (1272.95 kg/ha) than that of silver barb ( 402.72kg/ha). Survival, final weight and production rates of shrimp among the treatments were found insignificant while total production of shrimp/fish was found to vary significantly (P

The impact of fishing gears and methods: with recommendations for management of the fisheries of Lakes Victoria, Kyoga and Nabugabo

Historical analysis has shown that use of destructive fishing gears and methods contributed much to the initial depletion of fish stocks from Lakes Victoria and Kyoga. From about 1930 to 1960, the fisheries of Lake Victoria were managed by controlling the mesh size of gill nets. Gill net s of less than 127 mm (5) stretched mesh had been prohibited on Lake Victoria because they cropped immature Oreochromis esculentus (Ngege) which were at that time the most important commercial species. When the mesh size restriction was repealed in the Ugandan, Tanzanian and Kenya, there was a shift to smaller meshes which cropped immature tilapia and other large species and led to a collapse in the fishery.

Molecular modeling on human CCR5 receptors and complex with CD4 antigens and HIV-1 envelope glycoprotein gp120

AIM: To investigate the interaction between human CCR5 receptors (CCR5) and HIV-1 envelope glycoprotein gp120 (HIV-1 gp120) and HIV-1 receptor CD4 antigens (CD4). METHODS: The structurally con served regions (SCR) of human CCR5 was built by the SYBYL/Biopolymer module using the corresponding transmembrane (TM) domain of bacteriorhodopsin (bR) as the template. The coordinates for amino-ter minal residue sequence, and carboxyl-terminal residue sequence, extracellular and cytoplasmic loops were generated using LOOP SEARCH algorithm. Subsequently the structural model was merged into the complex with HIV-1 gp120 and CD4. RESULTS: Human CCR5 interacted with both an HIV-1 gp120 and CD4. The N-terminal residues (especially Met1 and Gln4) of human CCR5, contacted with CD4 residues, mainly 7Nith one span (56 - 59) of CD4 in electrostatic interaction and hydrogen-bonds. The binding sites of human CCR5 were buried in a hydrophobic center surrounded by a highly basic periphery. On the other hand, direct interatomic contacts were made between ? CCR5 residues and 6 gp120 amino-acid residues, which included van der Waals contacts, hydrophobic interaction, and hydrogen bonds. CONCLUSION: The interaction model should be helpful for rational design of novel anti-HIV drugs.

State-space inference and learning with Gaussian processes

State-space inference and learning with Gaussian processes (GPs) is an unsolved problem. We propose a new, general methodology for inference and learning in nonlinear state-space models that are described probabilistically by non-parametric GP models. We apply the expectation maximization algorithm to iterate between inference in the latent state-space and learning the parameters of the underlying GP dynamics model. Copyright 2010 by the authors.

Robust filtering and smoothing with gaussian processes

We propose a principled algorithm for robust Bayesian filtering and smoothing in nonlinear stochastic dynamic systems when both the transition function and the measurement function are described by non-parametric Gaussian process (GP) models. GPs are gaining increasing importance in signal processing, machine learning, robotics, and control for representing unknown system functions by posterior probability distributions. This modern way of system identification is more robust than finding point estimates of a parametric function representation. Our principled filtering/smoothing approach for GP dynamic systems is based on analytic moment matching in the context of the forward-backward algorithm. Our numerical evaluations demonstrate the robustness of the proposed approach in situations where other state-of-the-art Gaussian filters and smoothers can fail. © 2011 IEEE.

Investigation into partially premixed combustion in a light-duty multi-cylinder diesel engine fuelled gasoline and diesel with a mixture of

Partially premixed compression ignition (PPCI) engines operating with a low temperature highly homogeneous charge have been demonstrated previously using conventional diesel fuel. The short ignition delay of conventional diesel fuel requires high fuel injection pressures to achieve adequate premixing along with high levels of EGR (exhaust gas recirculation) to achieve low NOx emissions. Low load operating regions are typified by substantial emissions of CO and HC and there exists an upper operating load limitation due to very high rates of in-cylinder gas pressure rise. In this study mixtures of gasoline and diesel fuel were investigated using a multi-cylinder light duty diesel engine. It was found that an increased proportion of gasoline fuel reduced smoke emissions at higher operating loads through an increase in charge premixing resulting from an increase in ignition delay and higher fuel volatility. The results of this investigation confirm that a combination of fuel properties, exhibiting higher volatility and increased ignition delay, would enable a widening of the low emission operating regime, but that consideration must be given to combustion stability at low operating loads. Copyright © 2007 SAE International.

Effect of operating conditions and fuel type on crevice hc emissions: Model results and comparison with experiments

A one-dimensional model for crevice HC post-flame oxidation is used to calculate and understand the effect of operating parameters and fuel type (propane and isooctane) on the extent of crevice hydrocarbon and the product distribution in the post flame environment. The calculations show that the main parameters controlling oxidation are: bulk burned gas temperatures, wall temperatures, turbulent diffusivity, and fuel oxidation rates. Calculated extents of oxidation agree well with experimental values, and the sensitivities to operating conditions (wall temperatures, equivalence ratio, fuel type) are reasonably well captured. Whereas the bulk gas temperatures largely determine the extent of oxidation, the hydrocarbon product distribution is not very much affected by the burned gas temperatures, but mostly by diffusion rates. Uncertainties in both turbulent diffusion rates as well as in mechanisms are an important factor limiting the predictive capabilities of the model. However, it seems well suited to sensitivity calculations about a baseline. Copyright © 1999 Society of Automotive Engineers, Inc.

Friction-induced vibration: Model development and comparison with large-scale experimental tests

This paper presents a comparison between theoretical predictions and experimental results from a pin-on-disc test rig exploring friction-induced vibration. The model is based on a linear stability analysis of two systems coupled by sliding contact at a single point. Predictions are compared with a large volume of measured squeal initiations that have been post-processed to extract growth rates and frequencies at the onset of squeal. Initial tests reveal the importance of including both finite contact stiffness and a velocity-dependent dynamic model for friction, giving predictions that accounted for nearly all major clusters of squeal initiations from 0 to 5 kHz. However, a large number of initiations occurred at disc mode frequencies that were not predicted with the same parameters. These frequencies proved remarkably difficult to destabilise, requiring an implausibly high coefficient of friction. An attempt has been made to estimate the dynamic friction behaviour directly from the squeal initiation data, revealing complex-valued frequency-dependent parameters for a new model of linearised dynamic friction. These new parameters readily destabilised the disc modes and provided a consistent model that could account for virtually all initiations from 0 to 15 kHz. The results suggest that instability thresholds for a wide range of squeal-type behaviour can be predicted, but they highlight the central importance of a correct understanding and accurate description of dynamic friction at the sliding interface. © 2013 Elsevier Ltd. All rights reserved.