Novel Hetrocyclic Constructions Mediated by Nucleophilic Carbenes and Related Chemistry

The thesis entitled novel heterocyclic constructions mediated by nucleophilic carbenes and related chemistry, embodies the results of the investigations carried out to explore the reactivity patterns of the 1:1 zwitterions, generated in situ from various nucleophilic carbenes and DiMethyl AcetyleneDicarboxylate(DMAD) towards aldehydes and ketones. The traditional synthesis of complex organic molecules employs stepwise formation of bonds and involves multiple steps. Besides the sequential synthesis, in several instances, the desired product can also be obtained in one pot reactions of three or more starting compounds. Such reactions in which more than two starting materials react to form a product in such a way that the majority of the atoms of the starting materials can be found in the products are called multicomponent reactions(MCRs). The results of our investigations on the application of N-heterocyclic carbenes in multicomponent reaction with DMAD and aromatic aldehydes leading to the one pot synthesis of 2-oxy-maleate and furanone derivatives. It is interesting to note that dihydrofuran and lactone motifs are present in a number of biologically active natural products and other heterocyclic compounds. It is conceivable that the novel multicomponent reactions described herein will find application in the synthesis of a variety of heterocyclic compounds, and in natural product synthesis.

Novel1, 3-Dipolar Cycloaddition Reactions of Acyclic Carbonyl Ylides and Related Chemistry

The thesis entitled novel 1,3-dipolar cycloaddition reactions of acyclic carbonyl ylides and related chemistry embodies the results of the investigations carried out to explore the reactivity of acyclic carbonyl ylides,generated by the reaction of dicarbomethoxy carbine and aldehydes towards dipolarophiles such as activated styrenes,1,2-and 1,4-quinones. In conclusion ,we have explored the reactivity pattern of acyclic carbonyl ylides derived from dicarbomethoxycarbene and aldehyde towards activated styrenes with a view to develop a stereoselective synthesis of highly substituted tetrahydrofuran derivatives. It was also found that the ylide could be trapped by various 1,2-and 1,4-diones to form dioxolane derivatives. It is noteworthy that the cycloaddition is highly region- and stereoselective. With isatins the ylide preferentially adds to the more electrone deficient carbonyl group making it regiospecific. Hetrocyclic compounds are of pivotal importance in organic chemistry, and enormous efforts have been devoted to develop new methodologies for their synthesis. It is noteworthy in this context that, 1,3-dipolar cycloaddition reaction,otherwise called Huisgen reaction, constitutes one of the most efficient methods for the synthesis of five membered heterocycles. Among the various dipoles, carbonyl ylides have received substiancial attention in recent years largely due to their utility in the synthesis of a wide range of oxygen hetrocycles, which are often found as structural subunits of many bioactive natural products.

Development of hybrid UV VCSEL with organic active material and dielectric DBR mirrors for medical, sensoric and data storage applications

Lasers play an important role for medical, sensoric and data storage devices. This thesis is focused on design, technology development, fabrication and characterization of hybrid ultraviolet Vertical-Cavity Surface-Emitting Lasers (UV VCSEL) with organic laser-active material and inorganic distributed Bragg reflectors (DBR). Multilayer structures with different layer thicknesses, refractive indices and absorption coefficients of the inorganic materials were studied using theoretical model calculations. During the simulations the structure parameters such as materials and thicknesses have been varied. This procedure was repeated several times during the design optimization process including also the feedback from technology and characterization. Two types of VCSEL devices were investigated. The first is an index coupled structure consisting of bottom and top DBR dielectric mirrors. In the space in between them is the cavity, which includes active region and defines the spectral gain profile. In this configuration the maximum electrical field is concentrated in the cavity and can destroy the chemical structure of the active material. The second type of laser is a so called complex coupled VCSEL. In this structure the active material is placed not only in the cavity but also in parts of the DBR structure. The simulations show that such a distribution of the active material reduces the required pumping power for reaching lasing threshold. High efficiency is achieved by substituting the dielectric material with high refractive index for the periods closer to the cavity. The inorganic materials for the DBR mirrors have been deposited by Plasma- Enhanced Chemical Vapor Deposition (PECVD) and Dual Ion Beam Sputtering (DIBS) machines. Extended optimizations of the technological processes have been performed. All the processes are carried out in a clean room Class 1 and Class 10000. The optical properties and the thicknesses of the layers are measured in-situ by spectroscopic ellipsometry and spectroscopic reflectometry. The surface roughness is analyzed by atomic force microscopy (AFM) and images of the devices are taken with scanning electron microscope (SEM). The silicon dioxide (SiO2) and silicon nitride (Si3N4) layers deposited by the PECVD machine show defects of the material structure and have higher absorption in the ultra violet range compared to ion beam deposition (IBD). This results in low reflectivity of the DBR mirrors and also reduces the optical properties of the VCSEL devices. However PECVD has the advantage that the stress in the layers can be tuned and compensated, in contrast to IBD at the moment. A sputtering machine Ionsys 1000 produced by Roth&Rau company, is used for the deposition of silicon dioxide (SiO2), silicon nitride (Si3N4), aluminum oxide (Al2O3) and zirconium dioxide (ZrO2). The chamber is equipped with main (sputter) and assisted ion sources. The dielectric materials were optimized by introducing additional oxygen and nitrogen into the chamber. DBR mirrors with different material combinations were deposited. The measured optical properties of the fabricated multilayer structures show an excellent agreement with the results of theoretical model calculations. The layers deposited by puttering show high compressive stress. As an active region a novel organic material with spiro-linked molecules is used. Two different materials have been evaporated by utilizing a dye evaporation machine in the clean room of the department Makromolekulare Chemie und Molekulare Materialien (mmCmm). The Spiro-Octopus-1 organic material has a maximum emission at the wavelength λemission = 395 nm and the Spiro-Pphenal has a maximum emission at the wavelength λemission = 418 nm. Both of them have high refractive index and can be combined with low refractive index materials like silicon dioxide (SiO2). The sputtering method shows excellent optical quality of the deposited materials and high reflection of the multilayer structures. The bottom DBR mirrors for all VCSEL devices were deposited by the DIBS machine, whereas the top DBR mirror deposited either by PECVD or by combination of PECVD and DIBS. The fabricated VCSEL structures were optically pumped by nitrogen laser at wavelength λpumping = 337 nm. The emission was measured by spectrometer. A radiation of the VCSEL structure at wavelength 392 nm and 420 nm is observed.

Biological Basis and Clinical Application of Serum Tumor Markers

Cancer is the result of the accumulation of changes in molecules with important functions in processes such as cell proliferation, apoptosis, cell death and gene repair. Molecules, substances or altered pathways constitute tumor markers or biomarkers useful in clinical monitoring of cancer patients, because they have demonstrated to be suitable for the valuation of the patient’s treatment and it efficiency. Determination of tumor markers has not been very successful due to the low sensitivity and specificity of the techniques used and the requirement of large volumes of biological samples or the use of invasive methods for collecting them. The serum tumor markers arise, as a useful tool to obtain information about the disease progress and constitute as a scientific challenge to improve its applicability in early diagnosis, prognosis, monitoring of the disease and evaluation of therapeutic efficacy.

AS and A2 chemistry exam board OCR A : complete revision and practice.

Libro de texto para el nivel AS y A2 en el área de química según la especificación de OCR (Oxford Cambridge and RSA Examinations). Contiene las siguientes materias: átomos, electrones, tabla periódica, conceptos básicos e hidrocarbonos, alcoholes, haloalcanos y análisis, energía, aminos y ácidos, polímeros y síntesis, niveles, equilibrio y ph y elementos de transición. Al final de cada módulo se incluyen preguntas para evaluar la evolución de los conocimientos adquiridos (con soluciones en las últimas páginas del libro).

AS and A2 chemistry exam board AQA : complete revision and practice.

Libro de texto para el nivel AS y A2 en el área de química según la especificación de AQA (Assessment and Qualifications Alliance). Contiene las siguientes materias: estructura atómica, enlaces químicos y periodicidad, química orgánica y alcanos, energética, cinética, elementos y reacciones, grupo carbonilo, síntesis y análisis, termodinámica, equilibrio redox, metales de transición y reacciones inorgánicas. Al final de cada módulo se incluyen preguntas para evaluar la evolución de los conocimientos adquiridos por los alumnos (con soluciones en las últimas páginas del libro).

OCR (B) Salters AS - A2 Units F333 and F336 Chemistry : chemistry in practice and individual investigation.

Guía de revisión y apoyo para alumnos de educación secundaria de segundo ciclo que estén realizando el curso del OCR (Oxford Cambridge and RSA Examinations) en los niveles AS y A2 del área de química. Está estructurada en cuatro secciones que presentan una serie de consejos generales sobre cuestiones relacionadas con el trabajo práctico (obtención, registro y proceso de resultados en experimentos prácticos), un apartado de orientación para la realización de investigaciones individualizadas, un apéndice con algunos temas de teoría útiles en la investigación, y una sección final con las soluciones a las preguntas y ejercicios que aparecen a lo largo del libro.

Edexcel AS - A2 Units 3 and 6 Chemistry : chemistry laboratory skills.

Guía de apoyo para alumnos de educación secundaria de segundo ciclo que sigan la especificación de Edexcel en los niveles AS y A2 del área de química. Su objetivo es la consecución de las habilidades de laboratorio necesarias para la realización de experimentos a lo largo del curso (competencia práctica, observaciones cualitativas en compuestos orgánicos e inorgánicos, medición cuantitativa, preparación de compuestos orgánicos e inorgánicos). Incluye comentarios de un examinador explicando las respuestas de los ejercicios y destacando los errores más comunes, y una sección con ejemplos y soluciones de experimentos, ejercicios y preguntas que los alumnos pueden encontrar en el curso.

AQA A2 Unit 4 Chemistry : kinetics, equilibria and organic chemistry.

Guía de apoyo para alumnos de educación secundaria de segundo ciclo que sigan la especificación de AQA (Assessment and Qualifications Alliance) en el nivel A2 del área de química. Está dividida en tres secciones: una introducción con consejos y técnicas para la realización del examen; una guía de contenido con los principales conceptos y temas (cinética, equilibrio, ácidos y bases, nomenclatura e isomería en química orgánica, compuestos del grupo carbonilo, química aromática, aminas, aminoácidos, polímeros, análisis y síntesis orgánica y determinación de estructura); y una sección con preguntas de examen y respuestas comentadas por un examinador.

OCR (A) AS - A2 Units F323 and F326 Chemistry : practical skills in chemistry.

Guía de apoyo para alumnos de educación secundaria de segundo ciclo que realicen el curso del OCR (Oxford Cambridge and RSA Examinations) en los niveles AS y A2 del área de química. Está estructurada en una introducción con consejos generales sobre el uso de la guía y la realización de trabajos prácticos, y tres secciones dedicadas a la realización de experimentos: tareas cualitativas (observar los resultados de un experimento, registrarlos y realizar inferencias simples), tareas cuantitativas (desarrollar un experimento, realizar mediciones, registrar los resultados y usarlos para sacar una conclusión), y tareas de evaluación (interpretando los resultados y valorando los puntos débiles del procedimiento usado y las medidas tomadas). Se incluyen ejemplos en cada sección.

Genotypic comparison of Pantoea agglomerans plant and clinical strains

Pantoea agglomerans strains are among the most promising biocontrol agents for a variety of bacterial and fungal plant diseases, particularly fire blight of apple and pear. However, commercial registration of P. agglomerans biocontrol products is hampered because this species is currently listed as a biosafety level 2 (BL2) organism due to clinical reports as an opportunistic human pathogen. This study compares plant-origin and clinical strains in a search for discriminating genotypic/phenotypic markers using multi-locus phylogenetic analysis and fluorescent amplified fragment length polymorphisms (fAFLP) fingerprinting. Results: Majority of the clinical isolates from culture collections were found to be improperly designated as P. agglomerans after sequence analysis. The frequent taxonomic rearrangements underwent by the Enterobacter agglomerans/Erwinia herbicola complex may be a major problem in assessing clinical associations within P. agglomerans. In the P. agglomerans sensu stricto (in the stricter sense) group, there was no discrete clustering of clinical/biocontrol strains and no marker was identified that was uniquely associated to clinical strains. A putative biocontrol-specific fAFLP marker was identified only in biocontrol strains. The partial ORF located in this band corresponded to an ABC transporter that was found in all P. agglomerans strains. Conclusion: Taxonomic mischaracterization was identified as a major problem with P. agglomerans, and current techniques removed a majority of clinical strains from this species. Although clear discrimination between P. agglomerans plant and clinical strains was not obtained with phylogenetic analysis, a single marker characteristic of biocontrol strains was identified which may be of use in strain biosafety determinations. In addition, the lack of Koch's postulate fulfilment, rare retention of clinical strains for subsequent confirmation, and the polymicrobial nature of P. agglomerans clinical reports should be considered in biosafety assessment of beneficial strains in this species