Domestic hot water consumption vs. solar thermal energy storage: the optimum size of the storage tank

Many efforts have been made in order to adequate the production of a solar thermal collector field to the consumption of domestic hot water of the inhabitants of a building. In that sense, much has been achieved in different domains: research agencies, government policies and manufacturers. However, most of the design rules of the solar plants are based on steady state models, whereas solar irradiance, consumption and thermal accumulation are inherently transient processes. As a result of this lack of physical accuracy, thermal storage tanks are sometimes left to be as large as the designer decides without any aforementioned precise recommendation. This can be a problem if solar thermal systems are meant to be implemented in nowadays buildings, where there is a shortage of space. In addition to that, an excessive storage volume could not result more efficient in many residential applications, but costly, extreme in space consumption and in some cases too heavy. A proprietary transient simulation program has been developed and validated with a detailed measurement campaign in an experimental facility. In situ environmental data have been obtained through a whole year of operation. They have been gathered at intervals of 10 min for a solar plant of 50 m2 with a storage tank of 3 m3, including the equipment for domestic hot water production of a typical apartment building. This program has been used to obtain the design and dimensioning criteria of DHW solar plants under daily transient conditions throughout a year and more specifically the size of the storage tank for a multi storey apartment building. Comparison of the simulation results with the current Spanish regulation applicable, “Código Técnico de la Edificación” (CTE 2006), offers fruitful details and establishes solar facilities dimensioning criteria.

Space-state robust control of a Buck converter with amorphous core coil and variable load

Pulse-width modulation is widely used to control electronic converters. One of the most frequently used topologies for high DC voltage/low DC voltage conversion is the Buck converter. These converters are described by a second order system with an LC filter between the switching subsystem and the load. The use of a coil with an amorphous magnetic material core rather than an air core permits the design of smaller converters. If high switching frequencies are used to obtain high quality voltage output, then the value of the auto inductance L is reduced over time. Robust controllers are thus needed if the accuracy of the converter response must be preserved under auto inductance and payload variations. This paper presents a robust controller for a Buck converter based on a state space feedback control system combined with an additional virtual space variable which minimizes the effects of the inductance and load variations when a switching frequency that is not too high is applied. The system exhibits a null steady-state average error response for the entire range of parameter variations. Simulation results and a comparison with a standard PID controller are also presented.

Modelización de las propiedades radiativas e interacción de láseres ultraintensos con la materia

Desde el año 2004 el código ARWEN ha sido utilizado con éxito para simular y diseñar experimentos relacionados con blancos para fusión por confinamiento inercial [146], astrofísica de laboratorio [145], plasmas como amplificadores de láseres de rayos X [107] o plasmas creados por láser para la medición de espectros de transmisión. Para la realización de estas simulaciones es necesario, además de métodos de alto orden precisos y que presenten buenas propiedades conservativas, conocer ciertas propiedades de los plasmas. En el caso de la fluidodinámica y la conducción electrónica necesitaremos conocer la ecuación de estado [94, 49, 36], y para el transporte de la radiación será preciso disponer de los datos de absorción y emisión [104, 95, 40]. Hasta el año 2009 ARWEN dependía de códigos externos para la generación de estas tablas de opacidad, careciendo de control sobre los métodos empleados para su generación. Además estos códigos asumían equilibrio local termodinámico (LTE), limitando su validez a rangos de alta densidad y baja temperatura. En el marco de esta tesis se ha desarrollado el código BIGBART para la generación de tablas detalladas de opacidad y emisividad para su uso en el módulo de transporte de radiación. De esta forma el grupo dispondrá de su propia herramienta de generación de propiedades radiativas. El código desarrollado es capaz de tratar plasmas en estado fuera de equilibrio (non-LTE) mediante el modelo colisional-radiativo, extendiendo así el rango de validez de las tablas generadas. El trabajo desarrollado para implementar un código LTE/non-LTE estacionario es el siguiente Cálculo de estructura y datos atómicos. Se ha acoplado en código FAC a BIGBART, incorporando la capacidad para generar potenciales atómicos para una configuración y el cálculo de funciones de onda de electrones en orbitales ligados y libres. Aproximaciones y métodos para la obtención de tasas y secciones eficaces de procesos. Se han incluido y programado los modelos implementados en FAC para el cálculo de secciones eficaces de fotoionización, y tasas de decaimiento de emisión espontánea y autoionización. Además se ha incluido el modelo Plane-Wave Born (PWBA) para el cálculo de las secciones eficaces de ionización y excitación colisional. Modelos para la obtención de la distribución de estados iónicos dentro del plasma. Se ha programado un solver LTE basado en la ecuación de Saha-Boltzmann con efectos de ionización por presión debida a los iones adyacentes. También se ha implementado un modelo non-LTE colisionalradiativo para la resolución del sistema de ecuaciones que nos permite obtener la densidad de estados iónicos fuera de equilibrio. Modelo non-LTE RADIOM. Se ha implementado el modelo RADIOM para aproximar efectos de no-equilibrio mediante cálculos LTE a una temperatura equivalente, menor o igual que la temperatura electrónica real. Cálculo de las propiedades espectrales de absorción y emisión. Se han implementado los modelos para el cálculo de los perfiles espectrales de absorción y emisión para procesos entre niveles ligados, ligado-libre y librelibre. Aprovechando el trabajo realizado en este sentido, durante el transcurso de esta tesis se amplió el código BIGBART para tratar problemas con dependencia temporal. La extensión para tratar este tipo de problemas se orientó a la simulación numérica de la interacción de láseres ultra intensos en el rango XUV/rayos X. Para ello, además de adaptar el modelo non-LTE colisionalradiativo se incluyeron procesos adicionales asociados a la interacción de la materia con fotones altamente energéticos. También se han incluido modelos para el cálculo de las propiedades ópticas, y por ende las propiedades dieléctricas de la materia irradiada, de gran interés en algunas aplicaciones novedosas de estos láseres intensos. Debido a la naturaleza fuertemente fuera de equilibrio en la interacción de fotones de alta energía con la materia, se incluyó el tratamiento de la distribución de electrones libres fuera de equilibrio en la aproximación de Fokker-Planck, tanto para condiciones degeneradas como no degeneradas. El trabajo desarrollado en el código non-LTE con dependencia temporal es el siguiente Procesos asociados a láseres intensos XUV/rayos X. Se ha implementado el cálculo de procesos radiativos estimulados de absorción y emisión por el láser. También se han incluido procesos asociados a la creación de vacantes en capas internas electrónicas (Shake), además de doble autoionización y doble fotoionización. Cálculo de propiedades ópticas y dieléctricas en blancos sólidos. Se ha implementado un modelo para la absorción por bremsstrahlung inverso en blancos en estado sólido. Con el coeficiente de extinción debido a procesos de fotoabsorción resonante, fotoionización y bremsstrahlung inverso se obtiene el ´ındice de refracción mediante la relación de Kronig-Kramers. Electrones fuera de equilibrio. Se ha tratado la evolución de la distribución de electrones, cuando no está justificado asumir que es Maxwelliana o de Fermi-Dirac, mediante la aproximación de Fokker-Planck para la colisión entre electrones libres. En la resolución de la ecuación de Fokker-Planck se han incluido los procesos inelásticos por colisiones con iones y términos fuente por interacción con el láser y otros procesos. ABSTRACT Since 2004 the ARWEN code has been successfully used to simulate and design targets for inertial confinement fusion experiments [146], laboratory astrophysics [145], plasmas as X-ray lasers amplifiers [107] or laser created plasmas for measuring transmission spectra. To perform these simulations it is necessary, in addition to high order precise methods with good conservative properties, to know certain properties of plasmas. For fluid dynamic and electronic conduction we need to know the equation of state [94, 49, 36], and for radiation transport it will be necessary to have the data of the absorption and emission [104, 95, 40]. Until 2009 ARWEN depended on external codes to generate these opacity tables, lacking of control over the methods used for their generation. Besides, these codes assumed local thermodynamic equilibrium (LTE), limiting their validity ranges to high densities and low temperatures. As part of this thesis it has been developed the BIGBART code for generating detailed opacity and emissivity tables for use in the radiation transport module. This group will have its own tool for the generation of radiative properties. The developed code is capable of treating plasmas out of equilibrium (non-LTE) by means of a collisional-radiative model, extending the range of validity of the generated tables. The work to implement an LTE/non-LTE steady-state code is as follows Calculation of structure and atomic data. the FAC code was coupled to BIGBART, incorporating the ability to generate atomic potentials for calculating configuration wave functions for bound and free electrons. Approaches and methods for obtaining cross sections and processes rates. We have included and reprogrammed in Fortran the models implemented in FAC for calculation of photoionization cross sections and decay rates of spontaneous emission and autoionization. We also included the Plane- Wave Born (PWBA) model to calculate the cross sections of ionization and collisional excitation. Models for the obtention of the distribution of ionic states within the plasma. We programmed a LTE solver based on the Saha-Boltzmann equation with pressure ionization effects due to adjacent ions. It has also been implemented a non-LTE collisional-radiative model for solving the system of equations that allows us to obtain the density of ionic states out of equilibrium. Non-LTE RADIOM model. We have implemented the non-LTE RADIOM model to approximate non-equilibrium effects with LTE data at an equivalent temperature, lower or equal to the actual electronic temperature. Calculation of the spectral absorption and emission properties. Models have been implemented for the calculation of the spectral profiles of absorption and emission processes between bound levels, free-bound and free-free. Taking advantage of the work done in this direction throughout the course of this thesis the code BIGBART was extended to treat time-dependent problems. The extension to treat such problems is oriented to the numerical simulation of the interaction of ultra intense lasers in the XUV/X-ray range. For this range, in addition to adapting the non-LTE collisional-radiative model, additional processes associated with the interaction of matter with high energy photons. We also included models for calculation of the optical properties, and therefore the dielectric properties of the irradiated material, of great interest in some novel applications of these intense lasers. Due to the strong non-equilibrium nature of the interaction of high energy photons with matter, we included the treatment of the distribution of free electrons out of equilibrium in the Fokker-Planck approximation for both degenerate and non-degenerate conditions. The work in the non-LTE time-dependent code is as follows Processes associated with intense XUV/X-ray lasers. We have implemented the calculation of stimulated radiative processes in absorption and emission. Also we included processes associated with the creation of electronic vacancies in inner shells (Shake), double autoionization and double photoionization. Calculation of optical and dielectric properties in solid targets. We have implemented a model for inverse bremsstrahlung absorption in solid targets. With the extinction coefficient from resonant photoabsorption, photoionization and inverse bremsstrahlung the refractive index is obtained by the Kramers-Kronig relation. Electrons out of equilibrium. We treat the evolution of the electron distribution, when it is not justified to assume a Maxwellian or Fermi-Dirac distribution, by the Fokker-Planck approximation for collisions between electrons. When solving the Fokker-Planck equation we included inelastic collision processes with ions and source terms by interaction with the laser and other processes.

Estudio de la influencia de la relación C/N en la desnitrificación y metanogénesis de aguas residuales en un reactor anaeróbico de lecho fluidizado inverso

La nitrificación-desnitrificación es el proceso biológico tradicional para la remoción de nitrógeno de las aguas residuales (Ruiz G. et al., 2006a), siendo fundamental ya que contribuye a controlar la eutroficación de los cuerpos receptores. Debido al deterioro que sobre la disponibilidad de los recursos han ejercido las actividades antropogénicas, es necesario orientar el tratamiento de las aguas residuales hacia tecnologías que ofrezcan el mayor grado de sustentabilidad, planteando innovaciones en el tratamiento. El presente proyecto de tesis doctoral versa sobre el estudio de la influencia de la relación C/N en la desnitrificación y metanogénesis de aguas residuales urbanas en un reactor anaeróbico de lecho fluidizado inverso (RLFI). Previamente a la realización de las pruebas experimentales de variación de la relación C/N, se llevó a cabo la etapa de arranque del RLFI la cual se inició en modo batch, favoreciendo la formación y adhesión de biopelícula al medio de soporte utilizado (Extendosphere). Después, sobrevino la operación en modo continuo desde una carga volumétrica aplicada (CVA) de 0.5 g DQOs/L⋅d hasta alcanzar 4 g DQOs/L⋅d, carga volumétrica a la cual se logró la plena estabilización del reactor, siendo la alta variabilidad de la concentración de DQOs en el agua residual urbana de alimentación, la principal problemática que ocasionó retrasos en la estabilidad del reactor. A una CVA de 4 g DQOs/L⋅d en estado estacionario, el valor mínimo de eficiencia de remoción de DQOs fue del 32.36% y el máximo de 66.99%. En estas condiciones el porcentaje de metano presente en el biogás producido tuvo un valor medio de 85.57 ± 2.93%, siendo un valor alto comparado con otros porcentajes de metano encontrados en la digestión anaerobia de aguas residuales urbanas. El YCH4 tuvo un valor medio de 0.316 ± 0.110 LCH4/g DQOrem⋅día. Los porcentajes de metanización variaron en el rango de 20.50 a 100%, registrándose un valor medio de 73.42 ± 25.63%. La considerable variabilidad en el porcentaje de metanización se debió principalmente a que se presentaron eventos de lavado de soporte colonizado, lo cual propició que las actividades metabólicas fueran orientadas hacia formación de biopelícula (anabolismo) en vez de estar dirigidas hacia producción de metano (catabolismo). En relación a los ensayos con variación de la relación C/N, se manejaron relaciones DQOs/N-NO3 en el rango de 1.65 a 21.1 g DQOs/g N-NO3. La tasa de remoción anaerobia de DQOs se incrementó con la concentración de sustrato en una relación casi lineal, ajustándose a una cinética de primer orden, lo que regularmente se presenta a concentraciones bajas de sustrato. La eficiencia del proceso de desnitrificación fue por lo regular alta, incrementándose ligeramente con la concentración de DQOs en el influente, con valores en el rango de 73.8 a 99.1%. Por otra parte, la tasa de remoción por metanogénesis se incrementó con la concentración relativa de sustrato (es decir, a mayores relaciones DQOs/N-NO3), siendo más sensitiva la metanogénesis a la concentración relativa de sustrato que la desnitrificación. Conforme aumentó la relación DQOs/N-NO3, la desnitrificación, de ser la ruta metabólica principal de utilización de la materia orgánica (comparada con la metanización), empezó a combinarse con la metanización. De manera evidente, a las relaciones DQOs/N-NO3 probadas, se manifestaron más las actividades desnitrificantes, quedando reflejadas por el alto porcentaje de utilización de la DQOs removida hacia la desnitrificación. La relación experimental DQOs/N-NO3 a la cual se pudiera haber cumplido con el requerimiento de materia orgánica (en términos de DQOs) para la desnitrificación de nitratos en las aguas residuales urbanas tratadas resultó aproximadamente ser igual a 7.1 g DQOs/g N-NO3. A una CVA de 4 g DQOs/L⋅d, se obtuvo un diámetro promedio máximo de soporte colonizado igual a 266.106 ± 69.279 μm aunque, hay que indicarlo, se presentaron fluctuaciones, las cuales se reflejaron también en el espesor de la biopelícula, el cual tuvo un valor máximo de 50.099 μm y un valor promedio de 37.294 ± 11.199 μm. Estas fluctuaciones pudieron deberse a la existencia de corrientes preferenciales dentro del reactor, las cuales no permitieron un acceso equitativo del sustrato a todo el lecho. Nitrification-denitrification is the traditional biological process for nitrogen removal from wastewaters (Ruiz G. et al., 2006a), being fundamental since it contributes to control the eutrophication of the receiving waters. Due to the deterioration that on the availability of the aquatic resources the anthropogenic activities have exerted, it is necessary to orient the treatment of wastewaters towards technologies that offer the greater degree of sustainability, raising innovations in the treatment. This work studied the influence of C/N ratio on denitrification and methanogenesis of urban wastewaters in an inverse fluidized bed reactor (IFBR). Previously to the accomplishment of the experimental tests with variation of C/N ratio, the start up of the IFBR was carried out in batch way, encouraging the formation and adhesion of biofilm to Extendosphere, which it was used as support. The operation in continuous way carried out from an organic loading rate (OLR) of 0.5 g CODs/L ∙ d to 4 g CODs/L ∙ d, when the steady-state was reached. The high variability of the CODs of the urban wastewaters caused delays in the stability of the reactor. Once stationary state was reached, the removal efficiency of CODs ranged from 32.36 to 66.99% to 4 g CODs/L ∙ d. In these conditions the percentage of methane in produced biogas had an average value of 85.57 ± 2.93%, being a high value compared with other studies treating anaerobically urban wastewaters. The YCH4 had an average value of 0.316 ± 0.110 LCH4/g CODrem ∙ d. The percentage of methanisation ranged from 20.50 to 100%, with an average value of 73.42 ± 25.63%. The considerable variability in the methanisation percentage occurred mainly due events of wash-out of colonized support, which caused that the metabolic activities were oriented towards formation of biofilm (anabolism) instead of methane production (catabolism). Concerning the tests with variation of C/N ratio, CODs/NO3-N ratios from 1.65 to 21.1 g CODs/g NO3-N were proved. The CODs anaerobic removal rate increased with the substrate concentration in an almost linear relation, adjusting to a kinetic of first order, which regularly appears to low concentrations of substrate. Efficiency of the denitrification process was regularly high, and it increased slightly with the CODs concentration in the influent, ranging from 73.8 to 99.1%. On the other hand, the CODs removal rate by methanogenesis increased with the substrate relative concentration (e.g., to greater CODs/NO3-N ratios), being more sensitive the methanogenesis to the substrate relative concentration that the denitrification. When the CODs/NO3-N ratio increased, the denitrification, of being the main metabolic route of use of the organic matter (compared with the methanogenesis), began to be combined with the methanogenesis. Definitively, to the proven CODs/NO3-N ratios the denitrification processes were more pronounced, being reflected by the high percentage of use of the removed CODs towards denitrification. The experimental CODs/NO3-N ratio to which it was possible to have been fulfilled the requirement of organic matter (in terms of CODs) for the denitrification of nitrates in urban wastewaters turned out to be approximately 7.1 g CODs/g NO3-N. It was obtained a maximum average diameter of colonized support of 266.106 ± 69.279 μm to 4 g CODs/L ∙ d, although it is necessary to indicate that appeared fluctuations in the thickness of biofilm, which had a maximum value of 50.099 μm and an average value of 37.294 ± 11.199 μm. These fluctuations could be due to the existence of preferential currents within the reactor, which did not allow an equitable access of the substrate to all the bed.

Aggregation and disaggregation of senile plaques in Alzheimer disease

We quantitatively analyzed, using laser scanning confocal microscopy, the three-dimensional structure of individual senile plaques in Alzheimer disease. We carried out the quantitative analysis using statistical methods to gain insights about the processes that govern Aβ peptide deposition. Our results show that plaques are complex porous structures with characteristic pore sizes. We interpret plaque morphology in the context of a new dynamical model based on competing aggregation and disaggregation processes in kinetic steady-state equilibrium with an additional diffusion process allowing Aβ deposits to diffuse over the surface of plaques.

Circadian clock-controlled genes isolated from Neurospora crassa are late night- to early morning-specific

An endogenous circadian biological clock controls the temporal aspects of life in most organisms, including rhythmic control of genes involved in clock output pathways. In the fungus Neurospora crassa, one pathway known to be under control of the clock is asexual spore (conidia) development. To understand more fully the processes that are regulated by the N. crassa circadian clock, systematic screens were carried out for genes that oscillate at the transcriptional level. Time-of-day-specific cDNA libraries were generated and used in differential screens to identify six new clock-controlled genes (ccgs). Transcripts specific for each of the ccgs preferentially accumulate during the late night to early morning, although they vary with respect to steady-state mRNA levels and amplitude of the rhythm. Sequencing of the ends of the new ccg cDNAs revealed that ccg-12 is identical to N. crassa cmt encoding copper metallothionein, providing the suggestion that not all clock-regulated genes in N. crassa are specifically involved in the development of conidia. This was supported by finding that half of the new ccgs, including cmt(ccg-12), are not transcriptionally induced by developmental or light signals. These data suggest a major role for the clock in the regulation of biological processes distinct from development.

Clathrin Assembly Lymphoid Myeloid Leukemia (CALM) Protein: Localization in Endocytic-coated Pits, Interactions with Clathrin, and the Impact of Overexpression on Clathrin-mediated Traffic

The clathrin assembly lymphoid myeloid leukemia (CALM) gene encodes a putative homologue of the clathrin assembly synaptic protein AP180. Hence the biochemical properties, the subcellular localization, and the role in endocytosis of a CALM protein were studied. In vitro binding and coimmunoprecipitation demonstrated that the clathrin heavy chain is the major binding partner of CALM. The bulk of cellular CALM was associated with the membrane fractions of the cell and localized to clathrin-coated areas of the plasma membrane. In the membrane fraction, CALM was present at near stoichiometric amounts relative to clathrin. To perform structure–function analysis of CALM, we engineered chimeric fusion proteins of CALM and its fragments with the green fluorescent protein (GFP). GFP–CALM was targeted to the plasma membrane–coated pits and also found colocalized with clathrin in the Golgi area. High levels of expression of GFP–CALM or its fragments with clathrin-binding activity inhibited the endocytosis of transferrin and epidermal growth factor receptors and altered the steady-state distribution of the mannose-6-phosphate receptor in the cell. In addition, GFP–CALM overexpression caused the loss of clathrin accumulation in the trans-Golgi network area, whereas the localization of the clathrin adaptor protein complex 1 in the trans-Golgi network remained unaffected. The ability of the GFP-tagged fragments of CALM to affect clathrin-mediated processes correlated with the targeting of the fragments to clathrin-coated areas and their clathrin-binding capacities. Clathrin–CALM interaction seems to be regulated by multiple contact interfaces. The C-terminal part of CALM binds clathrin heavy chain, although the full-length protein exhibited maximal ability for interaction. Altogether, the data suggest that CALM is an important component of coated pit internalization machinery, possibly involved in the regulation of clathrin recruitment to the membrane and/or the formation of the coated pit.

Nucleocytoplasmic translocation of Stat1 is regulated by a leucine-rich export signal in the coiled-coil domain

Signal transducer and activator of transcription (Stat) proteins are latent transcription factors that reside in the cytoplasm before activation. On cytokine-induced tyrosine phosphorylation, these molecules dimerize and accumulate transiently in the nucleus. No specific signals mediating these processes have been identified to date. In this report, we examine the nuclear export of Stat1. We find that treatment of cells with the export inhibitor leptomycin B does not affect steady-state localization of Stat1 but impedes nuclear export after IFNγ-induced nuclear accumulation. We identify a conserved leucine-rich helical segment in the coiled-coil domain of Stat1, which is responsible for the efficient nuclear export of this protein. Mutation of two hallmark leucines within this segment greatly attenuate the back transport of Stat1 in the cytoplasm. When fused to a carrier protein, the Stat1 export sequence can mediate nuclear export after intranuclear microinjection. We show that prolonging the nuclear presence of Stat1 by inhibiting nuclear export reduces the transcriptional response to stimulation with IFNγ. These data suggest that Stats are actively exported from the nucleus via several separate pathways and link this activity to transcriptional activation.

Nonlinear-dynamical arrhythmia control in humans

Nonlinear-dynamical control techniques, also known as chaos control, have been used with great success to control a wide range of physical systems. Such techniques have been used to control the behavior of in vitro excitable biological tissue, suggesting their potential for clinical utility. However, the feasibility of using such techniques to control physiological processes has not been demonstrated in humans. Here we show that nonlinear-dynamical control can modulate human cardiac electrophysiological dynamics by rapidly stabilizing an unstable target rhythm. Specifically, in 52/54 control attempts in five patients, we successfully terminated pacing-induced period-2 atrioventricular-nodal conduction alternans by stabilizing the underlying unstable steady-state conduction. This proof-of-concept demonstration shows that nonlinear-dynamical control techniques are clinically feasible and provides a foundation for developing such techniques for more complex forms of clinical arrhythmia.

Expression Studies of the Zeaxanthin Epoxidase Gene in Nicotiana plumbaginifolia1

Abscisic acid (ABA) is a plant hormone involved in the control of a wide range of physiological processes, including adaptation to environmental stress and seed development. In higher plants ABA is a breakdown product of xanthophyll carotenoids (C40) via the C15 intermediate xanthoxin. The ABA2 gene of Nicotiana plumbaginifolia encodes zeaxanthin epoxidase, which catalyzes the conversion of zeaxanthin to violaxanthin. In this study we analyzed steady-state levels of ABA2 mRNA in N. plumbaginifolia. The ABA2 mRNA accumulated in all plant organs, but transcript levels were found to be higher in aerial parts (stems and leaves) than in roots and seeds. In leaves ABA2 mRNA accumulation displayed a day/night cycle; however, the ABA2 protein level remained constant. In roots no diurnal fluctuation in mRNA levels was observed. In seeds the ABA2 mRNA level peaked around the middle of development, when ABA content has been shown to increase in many species. In conditions of drought stress, ABA levels increased in both leaves and roots. A concomitant accumulation of ABA2 mRNA was observed in roots but not in leaves. These results are discussed in relation to the role of zeaxanthin epoxidase both in the xanthophyll cycle and in the synthesis of ABA precursors.

Stress signaling in plants: a mitogen-activated protein kinase pathway is activated by cold and drought.

Yeast and animals use mitogen-activated protein (MAP) kinase cascades to mediate stress and extracellular signals. We have tested whether MAP kinases are involved in mediating environmental stress responses in plants. Using specific peptide antibodies that were raised against different alfalfa MAP kinases, we found exclusive activation of p44MMK4 kinase in drought- and cold-treated plants. p44MMK4 kinase was transiently activated by these treatments and was correlated with a shift in the electrophoretic mobility of the p44MMK4 protein. Although transcript levels of the MMK4 gene accumulated after drought and cold treatment, no changes in p44MMK4 steady state protein levels were observed, indicating a posttranslational activation mechanism. Extreme temperatures, drought, and salt stress are considered to be different forms of osmotic stress. However, high salt concentrations or heat shock did not induce activation of p44MMK4, indicating the existence of distinct mechanisms to mediate different stresses in alfalfa. Stress adaptation in plants is mediated by abscisic acid (ABA)-dependent and ABA-independent processes. Although ABA rapidly induced the transcription of an ABA-inducible marker gene, MMK4 transcript levels did not increase and p44MMK4 kinase was not activated. These data indicate that the MMK4 kinase pathway mediates drought and cold signaling independently of ABA.

Unifying theory of hypoxia tolerance: molecular/metabolic defense and rescue mechanisms for surviving oxygen lack.

We develop a unifying theory of hypoxia tolerance based on information from two cell level models (brain cortical cells and isolated hepatocytes) from the highly anoxia tolerant aquatic turtle and from other more hypoxia sensitive systems. We propose that the response of hypoxia tolerant systems to oxygen lack occurs in two phases (defense and rescue). The first lines of defense against hypoxia include a balanced suppression of ATP-demand and ATP-supply pathways; this regulation stabilizes (adenylates) at new steady-state levels even while ATP turnover rates greatly decline. The ATP demands of ion pumping are down-regulated by generalized "channel" arrest in hepatocytes and by "spike" arrest in neurons. Hypoxic ATP demands of protein synthesis are down-regulated probably by translational arrest. In hypoxia sensitive cells this translational arrest seems irreversible, but hypoxia-tolerant systems activate "rescue" mechanisms if the period of oxygen lack is extended by preferentially regulating the expression of several proteins. In these cells, a cascade of processes underpinning hypoxia rescue and defense begins with an oxygen sensor (a heme protein) and a signal-transduction pathway, which leads to significant gene-based metabolic reprogramming-the rescue process-with maintained down-regulation of energy-demand and energy-supply pathways in metabolism throughout the hypoxic period. This recent work begins to clarify how normoxic maintenance ATP turnover rates can be drastically (10-fold) down-regulated to a new hypometabolic steady state, which is prerequisite for surviving prolonged hypoxia or anoxia. The implications of these developments are extensive in biology and medicine.

Centripetal cholesterol flux from extrahepatic organs to the liver is independent of the concentration of high density lipoprotein-cholesterol in plasma.

High density lipoproteins (HDLs) play a role in two processes that include the amelioration of atheroma formation and the centripetal flow of cholesterol from the extrahepatic organs to the liver. This study tests the hypothesis that the flow of sterol from the peripheral organs to the liver is dependent upon circulating HDL concentrations. Transgenic C57BL/6 mice were used that expressed variable amounts of simian cholesteryl ester-transfer protein (CETP). The rate of centripetal cholesterol flux was quantitated as the sum of the rates of cholesterol synthesis and low density lipoprotein-cholesterol uptake in the extrahepatic tissues. Steady-state concentrations of cholesterol carried in HDL (HDL-C) varied from 59 to 15 mg/dl and those of apolipoprotein AI from 138 to 65 mg/dl between the control mice (CETPc) and those maximally expressing the transfer protein (CETP+). There was no difference in the size of the extrahepatic cholesterol pools in the CETPc and CETP+ animals. Similarly, the rates of cholesterol synthesis (83 and 80 mg/day per kg, respectively) and cholesterol carried in low density lipoprotein uptake (4 and 3 mg/day per kg, respectively) were virtually identical in the two groups. Thus, under circumstances where the steady-state concentration of HDL-C varied 4-fold, the centripetal flux of cholesterol from the peripheral organs to the liver was essentially constant at approximately 87 mg/day per kg. These studies demonstrate that neither the concentration of HDL-C or apolipoprotein AI nor the level of CETP activity dictates the magnitude of centripetal cholesterol flux from the extrahepatic organs to the liver, at least in the mouse.

Real time optimization in chemical process: evaluation of strategies, improvements and industrial application.

The increasing economic competition drives the industry to implement tools that improve their processes efficiencies. The process automation is one of these tools, and the Real Time Optimization (RTO) is an automation methodology that considers economic aspects to update the process control in accordance with market prices and disturbances. Basically, RTO uses a steady-state phenomenological model to predict the process behavior, and then, optimizes an economic objective function subject to this model. Although largely implemented in industry, there is not a general agreement about the benefits of implementing RTO due to some limitations discussed in the present work: structural plant/model mismatch, identifiability issues and low frequency of set points update. Some alternative RTO approaches have been proposed in literature to handle the problem of structural plant/model mismatch. However, there is not a sensible comparison evaluating the scope and limitations of these RTO approaches under different aspects. For this reason, the classical two-step method is compared to more recently derivative-based methods (Modifier Adaptation, Integrated System Optimization and Parameter estimation, and Sufficient Conditions of Feasibility and Optimality) using a Monte Carlo methodology. The results of this comparison show that the classical RTO method is consistent, providing a model flexible enough to represent the process topology, a parameter estimation method appropriate to handle measurement noise characteristics and a method to improve the sample information quality. At each iteration, the RTO methodology updates some key parameter of the model, where it is possible to observe identifiability issues caused by lack of measurements and measurement noise, resulting in bad prediction ability. Therefore, four different parameter estimation approaches (Rotational Discrimination, Automatic Selection and Parameter estimation, Reparametrization via Differential Geometry and classical nonlinear Least Square) are evaluated with respect to their prediction accuracy, robustness and speed. The results show that the Rotational Discrimination method is the most suitable to be implemented in a RTO framework, since it requires less a priori information, it is simple to be implemented and avoid the overfitting caused by the Least Square method. The third RTO drawback discussed in the present thesis is the low frequency of set points update, this problem increases the period in which the process operates at suboptimum conditions. An alternative to handle this problem is proposed in this thesis, by integrating the classic RTO and Self-Optimizing control (SOC) using a new Model Predictive Control strategy. The new approach demonstrates that it is possible to reduce the problem of low frequency of set points updates, improving the economic performance. Finally, the practical aspects of the RTO implementation are carried out in an industrial case study, a Vapor Recompression Distillation (VRD) process located in Paulínea refinery from Petrobras. The conclusions of this study suggest that the model parameters are successfully estimated by the Rotational Discrimination method; the RTO is able to improve the process profit in about 3%, equivalent to 2 million dollars per year; and the integration of SOC and RTO may be an interesting control alternative for the VRD process.

Characterising the three-dimensional ozone distribution of a tidally locked Earth-like planet

We simulate the 3D ozone distribution of a tidally locked Earth-like exoplanet using the high-resolution, 3D chemistry climate model CESM1(WACCM) and study how the ozone layer of a tidally locked Earth (TLE) (ΩTLE = 1/365 days) differs from that of our present-day Earth (PDE) (ΩPDE = 1/1 day). The middle atmosphere reaches a steady state a symptotically within the first 80 days of the simulation. An upwelling, centred on the subsolar point, is present on the day side while a downwelling, centred on the antisolar point, is present on the night side. In the mesosphere, we find similar global ozone distributions for the TLE and the PDE, with decreased ozone on the day side and enhanced ozone on the night side. In the lower mesosphere, a jet stream transitions into a large-scale vortex around a low-pressure system, located at low latitudes of the TLE night side. In the middle stratosphere, the concentration of odd oxygen is approximately equal to that of the ozone [(Ox) ≈ (O3)]. At these altitudes, the lifetime of odd oxygen is ~16 h and the transport processes significantly contribute to the global distribution of stratospheric ozone. Compared to the PDE, where the strong Coriolis force acts as a mixing barrier between low and high latitudes, the transport processes of the TLE are governed by jet streams variable in the zonal and meridional directions. In the middle stratosphere of the TLE, we find high ozone values on the day side, due to the increased production of atomic oxygen on the day side, where it immediately recombines with molecular oxygen to form ozone. In contrast, the ozone is depleted on the night side, due to changes in the solar radiation distribution and the presence of a downwelling. As a result of the reduced Coriolis force, the tropical and extratropical air masses are well mixed and the global temperature distribution of the TLE stratosphere has smaller horizontal gradients than the PDE. Compared to the PDE, the total ozone column global mean is reduced by ~19.3 %. The day side and the night side total ozone column means are reduced by 23.21 and 15.52 %, respectively. Finally, we present the total ozone column (TOC) maps as viewed by a remote observer for four phases of the TLE during its revolution around the star. The mean TOC values of the four phases of the TLE vary by up to 23 %.