The 20S proteasome alpha(5) subunit of Arabidopsis thaliana carries an RNase activity and interacts in planta with the Lettuce mosaic potyvirus HcPro protein

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Identification of suitable internal control genes for expression studies in Coffea arabica under different experimental conditions

Background: Quantitative data from gene expression experiments are often normalized by transcription levels of reference or housekeeping genes. An inherent assumption for their use is that the expression of these genes is highly uniform in living organisms during various phases of development, in different cell types and under diverse environmental conditions. To date, the validation of reference genes in plants has received very little attention and suitable reference genes have not been defined for a great number of crop species including Coffea arabica. The aim of the research reported herein was to compare the relative expression of a set of potential reference genes across different types of tissue/organ samples of coffee. We also validated the expression profiles of the selected reference genes at various stages of development and under a specific biotic stress.Results: The expression levels of five frequently used housekeeping genes (reference genes), namely alcohol dehydrogenase (adh), 14-3-3, polyubiquitin (poly), beta-actin (actin) and glyceraldehyde-3-phosphate dehydrogenase (gapdh) was assessed by quantitative real-time RT-PCR over a set of five tissue/organ samples (root, stem, leaf, flower, and fruits) of Coffea arabica plants. In addition to these commonly used internal controls, three other genes encoding a cysteine proteinase (cys), a caffeine synthase (ccs) and the 60S ribosomal protein L7 (rpl7) were also tested. Their stability and suitability as reference genes were validated by geNorm, NormFinder and BestKeeper programs. The obtained results revealed significantly variable expression levels of all reference genes analyzed, with the exception of gapdh, which showed no significant changes in expression among the investigated experimental conditions.Conclusion: Our data suggests that the expression of housekeeping genes is not completely stable in coffee. Based on our results, gapdh, followed by 14-3-3 and rpl7 were found to be homogeneously expressed and are therefore adequate for normalization purposes, showing equivalent transcript levels in different tissue/ organ samples. Gapdh is therefore the recommended reference gene for measuring gene expression in Coffea arabica. Its use will enable more accurate and reliable normalization of tissue/organ-specific gene expression studies in this important cherry crop plant.

Photosynthetic limitations caused by different rates of water-deficit induction in Glycine max and Vigna unguiculata

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Cryptic sexual populations account for genetic diversity and ecological success in a widely distributed, asexual fungus-growing ant

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Using network connectance and autonomy analyses to uncover patterns of photosynthetic responses in tropical woody species

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

A macro- and micromorphological survey of floral and extrafloral nectaries in the epiphytic cactus Rhipsalis teres (Cactoideae: Rhipsalideae)

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Evidence of higher photosynthetic plasticity in the early successional Guazuma ulmifolia Lam. compared to the late successional Hymenaea courbaril L. grown in contrasting light environments

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Factors affecting seed predation of Eriotheca gracipiles (Bombacaceae) by parakeets in a cerrado fragment

Psittacids are important pre-dispersal seed predators. However, little is known about the parameters that may determine seed predation rates by these birds, such as plants' characteristics and microhabitat. Eriotheca gracilipes (Bombacaceae) is a semi-deciduous tree widely distributed in the Brazilian cerrado. The fruits are dehiscent pods and the seeds are wind-dispersed. Some individuals lose their leaves during the fruiting season, getting very conspicuous. Here we tested the hypothesis that the absence of leaves in E. gracilipes during the fruiting season may increase pre-dispersal seed predation by psittacids. We also tested the hypotheses that (1) seed predation intensity increases with increasing plant size and (2) number of fruits, (3) seed predation decreases with the increasing number of conspecific plants in a range of 15 m, and (4) seed predation intensity is lower in plants with higher vegetation cover over their crowns. The small parakeet Brotogeris versicolurus was the only species observed preying upon the seeds of E. gracilipes. The percentage of fruits damaged by the parakeets ranged from 0 to 100% (66.98 +/- 43.11%, n = 72) among the different plants. Our data give weak support to the hypothesis that the absence of leaves may facilitate plants and/or fruits detection by the parakeets. However, seed predation intensity was significantly affected by crop size. The hypothesis that conspecific fruiting plants surrounding the studied individuals may reduce predation rate was not supported. Nevertheless, trees without higher vegetation cover over their crowns were significantly affected by increased seed predation. This suggests that seed predation by parakeets can be a potential selective factor influencing fruit crop sizes in E. gracilipes. (c) 2007 Elsevier Masson SAS. All rights reserved.

Phytoseiidae (Acari) in forest fragments in the State of São Paulo, Brazil

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Putative metabolic pathway of mannitol and sorbitol and in sugarcane

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Temporal dynamics of stomatal conductance of plants under water deficit: can homeostasis be improved by more complex dynamics?

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

CO2 assimilation, photosynthetic light response curves, and water relations of 'Pêra' sweet orange plants infected with Xylella fastidiosa

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Water deficit affects photosynthetic induction in Bauhinia forficata Link (Fabaceae) and Esenbeckia leiocarpa Engl. (Rutaceae) growing in understorey and gap conditions

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Boron influence on concentration of polyols and other sugars in Eucalyptus

Embora a função do elemento Boro (B) nas plantas ainda não tenha sido bem esclarecida, várias hipóteses vêm sido levantadas. Uma das funções atribuídas a esse elemento é a síntese de carboidratos. Com o objetivo de avaliar o efeito do B sobre a síntese de alguns polióis e açúcares em Eucalyptus grandis e híbridos urograndis, estes foram submetidos à situação de suprimento e restrição de B. O experimento foi conduzido em casa de vegetação de acordo com o delineamento de blocos casualizados com cinco repetições, e os elementos nutricionais, assim como o B, foram fornecidos na forma de solução nutritiva. Não se observou diferença significativa nos teores de manitol, sorbitol, myo-inositol e scyllo-inositol e dos açúcares α-glicose e β-glicose entre E. grandis e híbridos. Arabinose foi o único a apresentar maior teor em E. grandis em restrição de B. O efeito da presença do B foi bastante expressivo, mas em suprimento do elemento as plantas apresentaram acréscimo significativo na síntese dos compostos avaliados.

Nitrate reductase activity in leaves and stems of tanner grass (Brachiaria radicans Napper)

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)