Influence of crust formation under natural rain on physical attributes of soils with different textures

One of the main negative anthropic effects on soil is the formation of crusts, resulting in soil degradation. This process of physical origin reduces soil water infiltration, causing increased runoff and consequently soil losses, water erosion and/or soil degradation. The study and monitoring of soil crusts is important for soil management and conservation, mainly in tropical regions where research is insufficient to explain how soil crusts are formed and how they evolve. The purpose of this study was to monitor these processes on soils with different particle size distributions. Soil crusts on a sandy/sandy loam Argissolo Vermelho-Amarelo (Typic Hapludult), sandy loam Latossolo Vermelho-Amarelo (Typic Hapludox) and a clayey Nitossolo Vermelho eutroférrico (Rhodic Kandiudalf) were monitored. The soil was sampled and data collected after 0, 3, 5 and 10 rain storms with intensities above 25 mm h-1, from December 2008 to May 2009. Soil chemical and particle size distribution analysis were performed. The changes caused by rainfall were monitored by determining the soil roughness, hydraulic conductivity and soil water retention curves and by micromorphological analysis. Reduced soil roughness and crust formation were observed for all soils during the monitored rainfall events. However, contrary to what was expected according to the literature, crust formation was not always accompanied by reductions in total porosity, hydraulic conductivity and soil water retention.

Pairing in a two-component ultracold Fermi gas: Phases with broken-space symmetries

We explore the phase diagram of a two-component ultracold atomic Fermi gas interacting with zero-range forces in the limit of weak coupling. We focus on the dependence of the pairing gap and the free energy on the variations in the number densities of the two species while the total density of the system is held fixed. As the density asymmetry is increased, the system exhibits a transition from a homogenous Bardeen-Cooper-Schrieffer (BCS) phase to phases with spontaneously broken global space symmetries. One such realization is the deformed Fermi surface superfluidity (DFS) which exploits the possibility of deforming the Fermi surfaces of the species into ellipsoidal form at zero total momentum of Cooper pairs. The critical asymmetries at which the transition from DFS to the unpaired state occurs are larger than those for the BCS phase. In this precritical region the DFS phase lowers the pairing energy of the asymmetric BCS state. We compare quantitatively the DFS phase to another realization of superconducting phases with broken translational symmetry: the single-plane-wave Larkin-Ovchinnikov-Fulde-Ferrell phase, which is characterized by a nonvanishing center-of-mass momentum of the Cooper pairs. The possibility of the detection of the DFS phase in the time-of-flight experiments is discussed and quantified for the case of 6Li atoms trapped in two different hyperfine states.

Micromorfologia de horizontes espódicos nas restingas do Estado de São Paulo

Os solos de restinga são pouco estudados e conhecidos no Brasil. Neste trabalho, a micromorfologia de horizontes espódicos foi investigada em quatro locais do litoral do Estado de São Paulo (Bertioga, Ilha de Cananeia, Ilha do Cardoso e Ilha Comprida). A técnica possibilitou caracterizar as diferentes formas da matéria orgânica, e, juntamente com a descrição morfológica de oito perfis de solos representativos das restingas do Estado de São Paulo, objetivou-se discutir os mecanismos envolvidos na gênese dos horizontes espódicos desses ambientes. Entre os resultados alcançados, destaca-se: a presença de revestimentos orgânicos monomórficos na superfície dos constituintes grossos da maioria dos horizontes analisados, bem como o preenchimento quase completo da porosidade entre grãos de alguns horizontes cimentados e brandos, são evidências de que a clássica teoria da mobilização, transporte e precipitação de complexos organometálicos é válida para os solos estudados. No entanto, matéria orgânica polimórfica e, ou, resíduos vegetais em diferentes estádios de decomposição foram as principais pedofeições observadas em horizontes espódicos mal drenados e sotopostos a horizontes hísticos. Nesses, a decomposição pela mesofauna e microbiológica das raízes in situ é um importante mecanismo de acumulação de matéria orgânica em profundidade e formação dos horizontes espódicos. A atuação das raízes na formação desses horizontes, no entanto, vai além da sua decomposição: a fábrica e as feições da matéria orgânica de um horizonte cimentado, incluindo remanescentes radiculares, indicaram que as raízes podem atuar na imobilização da matéria orgânica por meio de seu mecanismo de absorção seletiva. Nesse processo, a solução do solo rica em carbono orgânico dissolvido é absorvida seletivamente pelas raízes, segregando parte do carbono complexado em sua superfície e no entorno destas, absorvendo água e nutrientes. A atuação continuada desse processo leva à precipitação da matéria orgânica iluviada e segregada por meio de sua desidratação, que é condicionada pela própria absorção radicular.

Soil functioning in a toposequence under rainforest in São Paulo, Brazil

Studies of soil-water dynamics using toposequences are essential to improve the understanding of soil-water-vegetation relationships. This study assessed the hydro-physical and morphological characteristics of soils of Atlantic Rainforest in the Parque Estadual de Carlos Botelho, state of São Paulo, Brazil. The study area of 10.24 ha (320 x 320 m) was covered by dense tropical rainforest (Atlantic Rainforest). Based on soil maps and topographic maps of the area, a representative transect of the soil in this plot was chosen and five soil trenches were opened to determine morphological properties. To evaluate the soil hydro-physical functioning, soil particle size distribution, bulk density (r), particle density (r s), soil water retention curves (SWRC), field saturated hydraulic conductivity (Ks), macroporosity (macro), and microporosity (micro) and total porosity (TP) were determined. Undisturbed samples were collected for micromorphometric image analysis, to determine pore size, shape, and connectivity. The soils in the study area were predominantly Inceptisols, and secondly Entisols and Epiaquic Haplustult. In the soil hydro-physical characterization of the selected transect, a change was observed in Ks between the surface and subsurface layers, from high/intermediate to intermediate/low permeability. This variation in soil-water dynamics was also observed in the SWRC, with higher water retention in the subsurface horizons. The soil hydro-physical behavior was influenced by the morphogenetic characteristics of the soils.

Processo de formação de crostas superficiais em razão de sistemas de preparo do solo e chuva simulada

A chuva provoca a modificação da estrutura superficial do solo levando ao desenvolvimento de crostas. Este estudo avaliou a dinâmica da formação de crostas superficiais por meio da análise e descrição micromorfológica de lâminas delgadas. O experimento foi conduzido em 2009 e 2010. Em parcelas de 15 x 30 m, foram implantados os diferentes sistemas de preparos do solo: preparo convencional (PC), preparo reduzido (PR) e sem preparo (SP). Dentro das parcelas instalaram-se as microparcelas de 1 x 1m e aplicaram-se diferentes lâminas de chuva simulada (0, 27, 54 e 80 mm) com intensidade de 80 mm h-1. Nas microparcelas, coletou-se uma amostra indeformada em que consistia em um bloco de solo de 0,07 x 0,05 x 0,12 m. Os blocos foram impregnados com resina e após endurecimento e secagem total foram confeccionadas lâminas delgadas (4,5 x 8 cm), descritas, utilizando microscópio óptico. Foi confeccionada uma lâmina delgada para cada chuva (0, 27, 54 e 80 mm) e para cada preparo do solo. Todos os sistemas de preparo avaliados demonstraram presença de crostas; entretanto, o processo de formação das crostas ocorreu com dinâmica diferenciada em cada sistema de preparo. O preparo convencional apresentou formação de crostas a partir de 27 mm de chuva aplicada. O aumento da lâmina de chuva aplicada causou maior degradação da estrutura superficial e maior espessura da camada encrostada. O preparo reduzido e o sistema sem preparo apresentaram condições de superfície irregulares com as chuvas aplicadas, ou seja, não demonstraram modificações constantes da superfície do solo e na formação das crostas, com o aumento da chuva, como constatado no preparo convencional. A análise das lâminas delgadas e a descrição micromorfológica permitiram satisfatória observação e conclusão dos processos e da dinâmica envolvida na formação de crostas.

Gênese e classificação dos solos de uma topossequência em área de carste na Serra da Bodoquena , MS

Pouco se conhece sobre os solos dos sistemas cársticos carbonáticos no Brasil, apesar da sua importância e reconhecida fragilidade. Os objetivos deste estudo foram avaliar a gênese de solos desenvolvidos de rochas calcárias e materiais derivados e caracterizar os atributos desses, contribuindo para o Sistema Brasileiro de Classificação de Solos (SiBCS). Foram estudados três perfis de solos em uma topossequência na Serra da Bodoquena, MS, dispostos nas posições de sopé (P1), terço médio (P2) e topo (P3) de encosta suave-ondulada com pendente longa e perfil longitudinal plano-convexo-plano. Todos os perfis são profundos, com cores bruno-escura nos horizontes superficiais e avermelhada em subsuperfície, além de textura argilosa com incremento de argila em profundidade. O íon cálcio predomina no complexo sortivo, bem como a fração humina entre as frações húmicas. A micromorfologia dos solos revela feições de iluviação de argila em associação com feições de acumulações de CaCO3. Porém, em nenhum dos perfis, os teores de CaCO3 equivalente foram suficientes para o reconhecimento do horizonte cálcico e, ou, petrocálcico, ou de caráter carbonático ou hipocarbonático. Com sequência de horizontes A-Bt (P1); A-E-Bt (P2); e A-Bi (P3), os solos apresentam a seguinte ordem de evolução pedogenética: P1 > P2 > P3. De acordo com o SiBCS, os solos são classificados como Argissolo Vermelho eutrófico nitossólico (P1); Argissolo Vermelho distrófico típico (P2); e Cambissolo Háplico Tb eutrófico típico (P3). Para todos os perfis, no quinto nível aplica-se a classe de atividade de argila - Tm (atividade média), validando proposta recente do SiBCS.

Evaluation of physical quality indices of a soil under a seasonal semideciduous forest

The concept of soil quality is currently the subject of great discussion due to the interaction of soil with the environment (soil-plant-atmosphere) and practices of human intervention. However, concepts of soil quality relate quality to agricultural productivity, but assessment of soil quality in an agronomic context may be different from its assessment in natural areas. The aim of this study was to assess physical quality indices, the S index, soil aeration capacity (ACt/Pt), and water storage capacity (FC/Pt) of the soil from a permanent plot in the Caetetus Ecological Reserve (Galia, São Paulo, Brazil) under a seasonal semideciduous forest and compare them with the reference values for soil physical quality found in the literature. Water retention curves were used for that purpose. The S values found were higher than the proposed limit for soil physical quality (0.035). The A and E horizons showed the highest values because their sandy texture leads to a high slope of the water retention curve. The B horizons showed the lowest S values because their natural density leads to a lower slope of the water retention curve. The values found for ACt/Pt and FC/Pt were higher and lower than the idealized limits. The values obtained from these indices under natural vegetation can provide reference values for soils with similar properties that undergo changes due to anthropic activities. All the indices evaluated were effective in differentiating the effects of soil horizons in the natural hydro-physical functioning of the soils under study.

Assessment of pedotransfer functions for estimating soil water retention curves for the amazon region

Knowledge of the soil water retention curve (SWRC) is essential for understanding and modeling hydraulic processes in the soil. However, direct determination of the SWRC is time consuming and costly. In addition, it requires a large number of samples, due to the high spatial and temporal variability of soil hydraulic properties. An alternative is the use of models, called pedotransfer functions (PTFs), which estimate the SWRC from easy-to-measure properties. The aim of this paper was to test the accuracy of 16 point or parametric PTFs reported in the literature on different soils from the south and southeast of the State of Pará, Brazil. The PTFs tested were proposed by Pidgeon (1972), Lal (1979), Aina & Periaswamy (1985), Arruda et al. (1987), Dijkerman (1988), Vereecken et al. (1989), Batjes (1996), van den Berg et al. (1997), Tomasella et al. (2000), Hodnett & Tomasella (2002), Oliveira et al. (2002), and Barros (2010). We used a database that includes soil texture (sand, silt, and clay), bulk density, soil organic carbon, soil pH, cation exchange capacity, and the SWRC. Most of the PTFs tested did not show good performance in estimating the SWRC. The parametric PTFs, however, performed better than the point PTFs in assessing the SWRC in the tested region. Among the parametric PTFs, those proposed by Tomasella et al. (2000) achieved the best accuracy in estimating the empirical parameters of the van Genuchten (1980) model, especially when tested in the top soil layer.

The distribution of the dinucleotide CpG and cytosine methylation in the vitellogenin gene family.

Sequence data from regions of five vertebrate vitellogenin genes were used to examine the frequency, distribution, and mutability of the dinucleotide CpG, the preferred modification site for eukaryotic DNA methyltransferases. The observed level of the CpG dinucleotide in all five genes was markedly lower than that expected from the known mononucleotide frequencies. CpG suppression was greater in introns than in exons. CpG-containing codons were found to be avoided in the vitellogenin genes, but not completely despite the redundancy of the genetic code. Frequency and distribution patterns of this dinucleotide varied dramatically among these otherwise closely related genes. Dense clusters of CpG dinucleotides tended to appear in regions of either functional or structural interest (e.g., in the transposon-like Vi-element of Xenopus) and these clusters contained 5-methylcytosine (5 mC). 5 mC is known to undergo deamination to form thymidine, but the extent to which this transition occurs in the heavily methylated genomes of vertebrates and its contribution to CpG suppression are still unclear. Sequence comparison of the methylated vitellogenin gene regions identified C----T and G----A substitutions that were found to occur at relatively high frequencies. The predicted products of CpG deamination, TpG and CpA, were elevated. These findings are consistent with the view that CpG distribution and methylation are interdependent and that deamination of 5 mC plays an important role in promoting evolutionary change at the nucleotide sequence level.

Primordial neurosecretory apparatus identified in the choanoflagellate Monosiga brevicollis.

SNARE protein-driven secretion of neurotransmitters from synaptic vesicles is at the center of neuronal communication. In the absence of the cytosolic protein Munc18-1, synaptic secretion comes to a halt. Although it is believed that Munc18-1 orchestrates SNARE complexes, its mode of action is still a matter of debate. In particular, it has been challenging to clarify the role of a tight Munc18/syntaxin 1 complex, because this interaction interferes strongly with syntaxin's ability to form a SNARE complex. In this complex, two regions of syntaxin, the N-peptide and the remainder in closed conformation, bind to Munc18 simultaneously. Until now, this binary complex has been reported for neuronal tissues only, leading to the hypothesis that it might be a specialization of the neuronal secretion apparatus. Here we aimed, by comparing the core secretion machinery of the unicellular choanoflagellate Monosiga brevicollis with that of animals, to reconstruct the ancestral function of the Munc18/syntaxin1 complex. We found that the Munc18/syntaxin 1 complex from M. brevicollis is structurally and functionally highly similar to the vertebrate complex, suggesting that it constitutes a fundamental step in the reaction pathway toward SNARE assembly. We thus propose that the primordial secretion machinery of the common ancestor of choanoflagellates and animals has been co-opted for synaptic roles during the rise of animals.

MORPHOLOGICAL AND MICROMORPHOLOGICAL CHANGES IN THE STRUCTURE OF A RHODIC HAPLUDOX AS A RESULT OF AGRICULTURAL MANAGEMENT

In evaluation of soil quality for agricultural use, soil structure is one of the most important properties, which is influenced not only by climate, biological activity, and management practices but also by mechanical and physico-chemical forces acting in the soil. The purpose of this study was to evaluate the influence of conventional agricultural management on the structure and microstructure of a Latossolo Vermelho distroférrico típico (Rhodic Hapludox) in an experimental area planted to maize. Soil morphology was described using the crop profile method by identifying the distinct structural volumes called Morphologically Homogeneous Units (MHUs). For comparison, we also described a profile in an adjacent area without agricultural use and under natural regrowth referred to as Memory. We took undisturbed samples from the main MHUs so as to form thin sections and blocks of soil for micromorphological and micromorphometrical analyses. Results from the application of the crop profile method showed the occurrence of the following structural types: loose (L), fragmented (F) and continuous (C) in both profiles analyzed. In the Memory soil profile, the fragmented structures were classified as Fptμ∆+tf and Fmt∆μ, whose micromorphology shows an enaulic-porphyric (porous) relative distribution with a great deal of biological activity as indicated by the presence of vughs and channels. Lower down, from 0.20 to 0.35 m, there was a continuous soil volume (sub-type C∆μ), with a subangular block microstructure and an enaulic-porphyric relative distribution, though in this case more compact and with aggregate coalescence and less biological activity. The micromorphometrical study of the soil of the Memory Plot showed the predominance of complex pores in NAM (15.03 %), Fmt∆μ (11.72 %), and Fptμ∆+tf (7.73 %), and rounded pores in C∆μ (8.21 %). In the soil under conventional agricultural management, we observed fragmented structures similar to the Memory Plot from 0.02 to 0.20 m, followed by a volume with a compact continuous structure (C∆μ), without visible porosity and with few roots. In the MHUs under conventional management, reduction in the packing pores (40 %) was observed, mainly in the continuous units (C). The microstructure had well-defined blocks, with the occurrence of planar pores and less evidence of biological activity. In conclusion, the morphological and micromorphological analyses of the soil profiles studied offered complementary information regarding soil structural quality, especially concerning the changes in pore types as result of mechanical stress undergone by the soil.

ESTRUTURA DO SOLO SOB FEIJÃO IRRIGADO E DIFERENTES MANEJO DO SOLO

O manejo agrícola influencia a estrutura do solo, modificando os atributos físicos e o comportamento hídrico do solo. O objetivo deste trabalho foi avaliar os efeitos da semeadura direta (SD) e do preparo convencional (PC) sobre a estrutura do solo, por meio de atributos físicos e da distribuição dos poros, utilizando imagens digitais 2-D. O estudo foi realizado em um Latossolo Vermelho distroférrico com delineamento de blocos casualizados. A densidade do solo, macroporosidade, diâmetro médio ponderado (DMP), condutividade hidráulica do solo saturado (Kfs) e análise de imagens digitais 2-D (resolução de 156,25 μm2) foram avaliadas nas profundidades de 0-0,20 e 0,20-0,40 m. Os manejos não diferiram para a densidade e macroporosidade do solo. A SD revelou maior DMP e Kfs em relação ao PC. O PC apresentou maior área total de poros na profundidade de 0-0,20 m em relação ao SD, ocorrendo o inverso na profundidade de 0,20-0,40 m. A SD apresentou maior quantidade de poros complexos de tamanho grande (>0,156 mm2) na camada de 0,20-0,40 m em relação ao PC, que evidenciou predomínio de poros arredondados. A SD demonstrou melhorias na estrutura do solo em relação ao PC, com maior estabilidade dos agregados, condutividade hidráulica e área total de poros, contribuindo para a conservação do solo e da água em sistemas produtivos.

Hundreds of variants clustered in genomic loci and biological pathways affect human height.

Most common human traits and diseases have a polygenic pattern of inheritance: DNA sequence variants at many genetic loci influence the phenotype. Genome-wide association (GWA) studies have identified more than 600 variants associated with human traits, but these typically explain small fractions of phenotypic variation, raising questions about the use of further studies. Here, using 183,727 individuals, we show that hundreds of genetic variants, in at least 180 loci, influence adult height, a highly heritable and classic polygenic trait. The large number of loci reveals patterns with important implications for genetic studies of common human diseases and traits. First, the 180 loci are not random, but instead are enriched for genes that are connected in biological pathways (P = 0.016) and that underlie skeletal growth defects (P < 0.001). Second, the likely causal gene is often located near the most strongly associated variant: in 13 of 21 loci containing a known skeletal growth gene, that gene was closest to the associated variant. Third, at least 19 loci have multiple independently associated variants, suggesting that allelic heterogeneity is a frequent feature of polygenic traits, that comprehensive explorations of already-discovered loci should discover additional variants and that an appreciable fraction of associated loci may have been identified. Fourth, associated variants are enriched for likely functional effects on genes, being over-represented among variants that alter amino-acid structure of proteins and expression levels of nearby genes. Our data explain approximately 10% of the phenotypic variation in height, and we estimate that unidentified common variants of similar effect sizes would increase this figure to approximately 16% of phenotypic variation (approximately 20% of heritable variation). Although additional approaches are needed to dissect the genetic architecture of polygenic human traits fully, our findings indicate that GWA studies can identify large numbers of loci that implicate biologically relevant genes and pathways.

Association of genetic variation with systolic and diastolic blood pressure among African Americans: the Candidate Gene Association Resource study.

The prevalence of hypertension in African Americans (AAs) is higher than in other US groups; yet, few have performed genome-wide association studies (GWASs) in AA. Among people of European descent, GWASs have identified genetic variants at 13 loci that are associated with blood pressure. It is unknown if these variants confer susceptibility in people of African ancestry. Here, we examined genome-wide and candidate gene associations with systolic blood pressure (SBP) and diastolic blood pressure (DBP) using the Candidate Gene Association Resource (CARe) consortium consisting of 8591 AAs. Genotypes included genome-wide single-nucleotide polymorphism (SNP) data utilizing the Affymetrix 6.0 array with imputation to 2.5 million HapMap SNPs and candidate gene SNP data utilizing a 50K cardiovascular gene-centric array (ITMAT-Broad-CARe [IBC] array). For Affymetrix data, the strongest signal for DBP was rs10474346 (P= 3.6 × 10(-8)) located near GPR98 and ARRDC3. For SBP, the strongest signal was rs2258119 in C21orf91 (P= 4.7 × 10(-8)). The top IBC association for SBP was rs2012318 (P= 6.4 × 10(-6)) near SLC25A42 and for DBP was rs2523586 (P= 1.3 × 10(-6)) near HLA-B. None of the top variants replicated in additional AA (n = 11 882) or European-American (n = 69 899) cohorts. We replicated previously reported European-American blood pressure SNPs in our AA samples (SH2B3, P= 0.009; TBX3-TBX5, P= 0.03; and CSK-ULK3, P= 0.0004). These genetic loci represent the best evidence of genetic influences on SBP and DBP in AAs to date. More broadly, this work supports that notion that blood pressure among AAs is a trait with genetic underpinnings but also with significant complexity.