Automatic classification of enzyme family in protein annotation

Most of the tasks in genome annotation can be at least partially automated. Since this annotation is time-consuming, facilitating some parts of the process - thus freeing the specialist to carry out more valuable tasks - has been the motivation of many tools and annotation environments. In particular, annotation of protein function can benefit from knowledge about enzymatic processes. The use of sequence homology alone is not a good approach to derive this knowledge when there are only a few homologues of the sequence to be annotated. The alternative is to use motifs. This paper uses a symbolic machine learning approach to derive rules for the classification of enzymes according to the Enzyme Commission (EC). Our results show that, for the top class, the average global classification error is 3.13%. Our technique also produces a set of rules relating structural to functional information, which is important to understand the protein tridimensional structure and determine its biological function. © 2009 Springer Berlin Heidelberg.

Avaliação comparada do uso de linguagens de indexação em catálogos de bibliotecas universitárias para recuperação por assunto

A comparative evaluation was made of the use of natural language versus two specialized indexing languages, aiming to demonstrate the influence of the availability of indexing languages on the functioning of information retrieval systems. The study was conducted within the ambit of the construction of search strategies by subject in online university library catalogs. The precision ratio was calculated to determine the accuracy of each indexing language in subjectbased information retrieval. From the comparative evaluation of the use of indexing languages, it was concluded that the term specificity required by the user during retrieval was more satisfactory when the query was made through controlled languages, whose availability and simplicity is also an indispensable requisite.

Políticas de indexação no âmbito da gestão do conhecimento organizacional

The purpose of this article is to understand, by means of the analysis of the literature, the existing relations between the indexing policies and the organizational knowledge management in organizational contexts as support to the implementation of strategic actions. It also searches for identifying the essential elements for the establishment of indexing policies and which mechanisms this process is based on. As result of some inferences, an organizational knowledge management model is presented with elements related to the individuals, the organization and the external environment as well.

Um olhar semiótico sobre o processo de indexação: a questão da representação e do referente

The indexing process is determined the subject of the document and its relation with the representation information. To cultivate the interdisciplinary contributions is essential, especially when the relationship allows substantial additions to the area of research. Rehearse some contributions in this article of Semiotics of Charles Sanders Peirce in the field of study of the indexing process, in particular, the notions of representation and referent. It is concluded that the tripartite division of the sign provides basis for to understanding the process of thematic representation, discussing the relationship of the sign with the object and the phenomenon presented, in the indexer sees the documentary language as referent.

Relações conceituais como ponto de inflexão entre linguagens documentais, terminologia e ontologias

A reflection is offered on the complementary relations among documentary languages, terminology, and ontologies, in regard to the study of conceptual relations used to organize knowledge. Building on selected texts from the international literature, the relations between documentary languages and different emerging technology solutions are analyzed, taking SKOS as a model; and also the relations among thesauri, ontologies and terminology, with the support of the theoretical concept of documentary representation. The adoption of the principles of terminology, as understood in Information Science, in building ontologies is supported; and the innovative opportunities offered by ontologies to the improvement and processing of conceptual relations in indexing languages is defended.

Do conhecimento tácito ao conhecimento explícito: A elaboração de manual de política de indexação em bibliotecas universitárias

The indexing policy establishes the guiding principles and criteria for the indexer when determining the subjects of the documents. This article shows how to capture the indexers' tacit knowledge into explicit knowledge using the group verbal protocol methodology to produce an indexing manual. Continuing professional education results to be a key factor in obtaining good results when formalizing the indexing policy of a library and keeping it up to date.

Perspectivas metodológicas para a identificação do aboutness em textos narrativos de ficção

Proposal of a theoretical and methodological use of the generative meaning trajectory postulated by Greimas with the intention of developing a methodology for the identification of concepts in narrative texts of fiction to facilitate its subject indexing and classification.

Relações teóricas da organização do conhecimento com as abordagens de catalogação de assunto, indexação e análise documental: Uma análise de domínio da revista Scire (1995-2010)

Considering knowledge organization and representation as a theoretical line used by Information Science to face the subject approach to information, in a dialogical relation with subject cataloguing, indexing and analyse documentaire, this article carries out a domain-analysis of Scire journal (1995-2010) in order to identify the scientific production in the mentionned theoretical lines as well as their relationships. Scire constitutes an environment where members of the different paradigms have found an space to relate each other.

Elementos de política de indexação em biblioteca universitária da área médica

In the context of university libraries, the optimization and streamlining of services and processes related to informational content indexing and retrieval are strongly influenced by the indexing policy adopted. This article is aimed at researching the indexing policy elements that are more suitable for medical university libraries. To achieve our objective, we applied three instruments: organizational culture analysis, individual verbal protocol and evaluation of indexing. Results emphasize the importance of developing an indexing policy to improve the processes and services offered by university libraries, as well as the retrieval of information by the user community. More studies are necessary in the medical area involvoving catalogers, experts, users and managers for the development of the indexing manual.

The perception of brazilian researchers concerning the factors that influence the citation of their articles: A study in the field of sustainability

With growing institutional pressure from the Brazilian government to increase the impact of research that it funds, Brazilian researchers are increasingly interested in discovering factors that affect the citation of their articles. The aim of the present article was to assess the perceptions of Brazilian sustainability researchers to identify factors that influence the impacts of their research. A survey was conducted with researchers in the field of sustainability and 89 questionnaires were completed. All of those researchers have articles or research projects in the field of sustainability (mixing environmental, social and/or economical) recorded in the Scielo or Lattes Curriculum Brazilian databases. Results suggest four factors that may explain the impact of article citations: (1) prestige of the author and the research network; (2) prestige of the means of publication and indexing; (3) accessibility and quality characteristics of the article; and (4) international nature of communication and scope of the study. Surprisingly, such factors were not statistically significant in explaining the citations of the participating researchers. These results show the need to consider other factors that can explain the impact of research, discovering the missing links. © 2013 Elsevier Inc.

Uma abordagem nebulosa de raciocínio baseado em casos para recomendação de sistemas marítimos de produção de petróleo

Pós-graduação em Ciência da Computação - IBILCE

Estudos éticos em representação do conhecimento: uma análise da questão feminina em linguagens documentais brasileiras

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Avaliação da indexação em bibliotecas universitárias: uma aplicação em catálogos online

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

A importância da observação da estrutura textual durante a catalogação de assunto de livros científicos em bibliotecas universitárias: uma análise realizada a partir da técnica de Protocolo Verbal

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Estudo de vocabulário controlado na indexação automática: aplicação no processo de indexação do Sistema de Indización Semiautomática (SISA)

Pós-graduação em Ciência da Informação - FFC