Layered Clustering Communication Protocol for Wireless Sensor Networks

In this paper, we propose a Layered Clustering Hierarchy (LCH) communication protocol for Wireless Sensor Networks (WSNs). The design of LCH has two goals: scalability and energy-efficiency. In LCH, the sensor nodes are organized as a layered clustering structure. Each layer runs a distributed clustering protocol. By randomizing the rotation of cluster heads in each layer, the energy load is distributed evenly across sensors in the network. Our simulations show that LCH is effective in densely deployed sensor networks. On average, 70% of live sensor nodes are involved directly in the clustering communication hierarchy. Moreover, the simulations also show that the energy load and dead nodes are distributed evenly over the network. As studies prove that the performance of LCH depends mainly on the distributed clustering protocol, the location of cluster heads and cluster size are two critical factors in the design of LCH.

KeyRev: An Efficient Key Revocation Scheme for Wireless Sensor Networks

Key management is a core mechanism to ensure the security of applications and network services in wireless sensor networks. It includes two aspects: key distribution and key revocation. Key distribution has been extensively studied in the context of sensor networks. However, key revocation has received relatively little attention. Existing key revocation schemes can be divided into two categories: centralized key revocation scheme and distributed key revocation scheme. In this paper, we first summarize the current key revocation schemes for sensor networks. Then, we propose an efficient centralized key revocation scheme, KeyRev, for wireless sensor networks. Unlike most proposed key revocation schemes focusing on removing the compromised keys, we propose to use key updating techniques to obsolesce the keys owned by the compromised sensor nodes and thus remove the nodes from the network. Our analyses show that the KeyRev scheme is secure inspite of not removing the pre-distributed key materials at compromised sensor nodes. Simulation results also indicate that the KeyRev scheme is scalable and performs very well in wireless sensor networks.

Providing Reliable Data Transport for Dynamic Event Sensing in Wireless Sensor Networks

In this paper, we propose a Loss Tolerant Reliable (LTR) data transport mechanism for dynamic Event Sensing (LTRES) in WSNs. In LTRES, a reliable event sensing requirement at the transport layer is dynamically determined by the sink. A distributed source rate adaptation mechanism is designed, incorporating a loss rate based lightweight congestion control mechanism, to regulate the data traffic injected into the network so that the reliability requirement can be satisfied. An equation based fair rate control algorithm is used to improve the fairness among the LTRES flows sharing the congestion path. The performance evaluations show that LTRES can provide LTR data transport service for multiple events with short convergence time, low lost rate and high overall bandwidth utilization.

A Key Management Protocol for Wireless Sensor Networks with Multiple Base Stations

Most of the proposed key management protocols for wireless sensor networks (WSNs) in the literature assume that a single base station is used and that the base station is trustworthy. However, there are applications in which multiple base stations are used and the security of the base stations must be considered. This paper investigates a key management protocol in wireless sensor networks which include multiple base stations. We consider the situations in which both the base stations and the sensor nodes can be compromised. The proposed key management protocol, mKeying, includes two schemes, a key distribution scheme, mKeyDist, supporting multiple base stations in the network, and a key revocation scheme, mKeyRev, used to efficiently remove the compromised nodes from the network. Our analyses show that the proposed protocol is efficient and secure against the compromise of the base stations and the sensor nodes.

Cross-Layer Packet Size Optimization for Wireless Terrestrial, Underwater, and Underground Sensor Networks

In this paper, a cross-layer solution for packet size optimization in wireless sensor networks (WSN) is introduced such that the effects of multi-hop routing, the broadcast nature of the physical wireless channel, and the effects of error control techniques are captured. A key result of this paper is that contrary to the conventional wireless networks, in wireless sensor networks, longer packets reduce the collision probability. Consequently, an optimization solution is formalized by using three different objective functions, i.e., packet throughput, energy consumption, and resource utilization. Furthermore, the effects of end-to-end latency and reliability constraints are investigated that may be required by a particular application. As a result, a generic, cross-layer optimization framework is developed to determine the optimal packet size in WSN. This framework is further extended to determine the optimal packet size in underwater and underground sensor networks. From this framework, the optimal packet sizes under various network parameters are determined.

Trypanosoma cruzi mitochondrial maxicircles display species- and strain-specific variation and a conserved element in the non-coding region

Abstract Background The mitochondrial DNA of kinetoplastid flagellates is distinctive in the eukaryotic world due to its massive size, complex form and large sequence content. Comprised of catenated maxicircles that contain rRNA and protein-coding genes and thousands of heterogeneous minicircles encoding small guide RNAs, the kinetoplast network has evolved along with an extreme form of mRNA processing in the form of uridine insertion and deletion RNA editing. Many maxicircle-encoded mRNAs cannot be translated without this post-transcriptional sequence modification. Results We present the complete sequence and annotation of the Trypanosoma cruzi maxicircles for the CL Brener and Esmeraldo strains. Gene order is syntenic with Trypanosoma brucei and Leishmania tarentolae maxicircles. The non-coding components have strain-specific repetitive regions and a variable region that is unique for each strain with the exception of a conserved sequence element that may serve as an origin of replication, but shows no sequence identity with L. tarentolae or T. brucei. Alternative assemblies of the variable region demonstrate intra-strain heterogeneity of the maxicircle population. The extent of mRNA editing required for particular genes approximates that seen in T. brucei. Extensively edited genes were more divergent among the genera than non-edited and rRNA genes. Esmeraldo contains a unique 236-bp deletion that removes the 5'-ends of ND4 and CR4 and the intergenic region. Esmeraldo shows additional insertions and deletions outside of areas edited in other species in ND5, MURF1, and MURF2, while CL Brener has a distinct insertion in MURF2. Conclusion The CL Brener and Esmeraldo maxicircles represent two of three previously defined maxicircle clades and promise utility as taxonomic markers. Restoration of the disrupted reading frames might be accomplished by strain-specific RNA editing. Elements in the non-coding region may be important for replication, transcription, and anchoring of the maxicircle within the kinetoplast network.

Design of wireless sensor networks for fluid dynamic applications

In fluid dynamics research, pressure measurements are of great importance to define the flow field acting on aerodynamic surfaces. In fact the experimental approach is fundamental to avoid the complexity of the mathematical models for predicting the fluid phenomena. It’s important to note that, using in-situ sensor to monitor pressure on large domains with highly unsteady flows, several problems are encountered working with the classical techniques due to the transducer cost, the intrusiveness, the time response and the operating range. An interesting approach for satisfying the previously reported sensor requirements is to implement a sensor network capable of acquiring pressure data on aerodynamic surface using a wireless communication system able to collect the pressure data with the lowest environmental–invasion level possible. In this thesis a wireless sensor network for fluid fields pressure has been designed, built and tested. To develop the system, a capacitive pressure sensor, based on polymeric membrane, and read out circuitry, based on microcontroller, have been designed, built and tested. The wireless communication has been performed using the Zensys Z-WAVE platform, and network and data management have been implemented. Finally, the full embedded system with antenna has been created. As a proof of concept, the monitoring of pressure on the top of the mainsail in a sailboat has been chosen as working example.

Cooperative communication and distributed detection in wireless sensor networks

Recent progress in microelectronic and wireless communications have enabled the development of low cost, low power, multifunctional sensors, which has allowed the birth of new type of networks named wireless sensor networks (WSNs). The main features of such networks are: the nodes can be positioned randomly over a given field with a high density; each node operates both like sensor (for collection of environmental data) as well as transceiver (for transmission of information to the data retrieval); the nodes have limited energy resources. The use of wireless communications and the small size of nodes, make this type of networks suitable for a large number of applications. For example, sensor nodes can be used to monitor a high risk region, as near a volcano; in a hospital they could be used to monitor physical conditions of patients. For each of these possible application scenarios, it is necessary to guarantee a trade-off between energy consumptions and communication reliability. The thesis investigates the use of WSNs in two possible scenarios and for each of them suggests a solution that permits to solve relating problems considering the trade-off introduced. The first scenario considers a network with a high number of nodes deployed in a given geographical area without detailed planning that have to transmit data toward a coordinator node, named sink, that we assume to be located onboard an unmanned aerial vehicle (UAV). This is a practical example of reachback communication, characterized by the high density of nodes that have to transmit data reliably and efficiently towards a far receiver. It is considered that each node transmits a common shared message directly to the receiver onboard the UAV whenever it receives a broadcast message (triggered for example by the vehicle). We assume that the communication channels between the local nodes and the receiver are subject to fading and noise. The receiver onboard the UAV must be able to fuse the weak and noisy signals in a coherent way to receive the data reliably. It is proposed a cooperative diversity concept as an effective solution to the reachback problem. In particular, it is considered a spread spectrum (SS) transmission scheme in conjunction with a fusion center that can exploit cooperative diversity, without requiring stringent synchronization between nodes. The idea consists of simultaneous transmission of the common message among the nodes and a Rake reception at the fusion center. The proposed solution is mainly motivated by two goals: the necessity to have simple nodes (to this aim we move the computational complexity to the receiver onboard the UAV), and the importance to guarantee high levels of energy efficiency of the network, thus increasing the network lifetime. The proposed scheme is analyzed in order to better understand the effectiveness of the approach presented. The performance metrics considered are both the theoretical limit on the maximum amount of data that can be collected by the receiver, as well as the error probability with a given modulation scheme. Since we deal with a WSN, both of these performance are evaluated taking into consideration the energy efficiency of the network. The second scenario considers the use of a chain network for the detection of fires by using nodes that have a double function of sensors and routers. The first one is relative to the monitoring of a temperature parameter that allows to take a local binary decision of target (fire) absent/present. The second one considers that each node receives a decision made by the previous node of the chain, compares this with that deriving by the observation of the phenomenon, and transmits the final result to the next node. The chain ends at the sink node that transmits the received decision to the user. In this network the goals are to limit throughput in each sensor-to-sensor link and minimize probability of error at the last stage of the chain. This is a typical scenario of distributed detection. To obtain good performance it is necessary to define some fusion rules for each node to summarize local observations and decisions of the previous nodes, to get a final decision that it is transmitted to the next node. WSNs have been studied also under a practical point of view, describing both the main characteristics of IEEE802:15:4 standard and two commercial WSN platforms. By using a commercial WSN platform it is realized an agricultural application that has been tested in a six months on-field experimentation.

Progetto di reti Sensori Wireless e tecniche di Fusione Sensoriale

Ambient Intelligence (AmI) envisions a world where smart, electronic environments are aware and responsive to their context. People moving into these settings engage many computational devices and systems simultaneously even if they are not aware of their presence. AmI stems from the convergence of three key technologies: ubiquitous computing, ubiquitous communication and natural interfaces. The dependence on a large amount of fixed and mobile sensors embedded into the environment makes of Wireless Sensor Networks one of the most relevant enabling technologies for AmI. WSN are complex systems made up of a number of sensor nodes, simple devices that typically embed a low power computational unit (microcontrollers, FPGAs etc.), a wireless communication unit, one or more sensors and a some form of energy supply (either batteries or energy scavenger modules). Low-cost, low-computational power, low energy consumption and small size are characteristics that must be taken into consideration when designing and dealing with WSNs. In order to handle the large amount of data generated by a WSN several multi sensor data fusion techniques have been developed. The aim of multisensor data fusion is to combine data to achieve better accuracy and inferences than could be achieved by the use of a single sensor alone. In this dissertation we present our results in building several AmI applications suitable for a WSN implementation. The work can be divided into two main areas: Multimodal Surveillance and Activity Recognition. Novel techniques to handle data from a network of low-cost, low-power Pyroelectric InfraRed (PIR) sensors are presented. Such techniques allow the detection of the number of people moving in the environment, their direction of movement and their position. We discuss how a mesh of PIR sensors can be integrated with a video surveillance system to increase its performance in people tracking. Furthermore we embed a PIR sensor within the design of a Wireless Video Sensor Node (WVSN) to extend its lifetime. Activity recognition is a fundamental block in natural interfaces. A challenging objective is to design an activity recognition system that is able to exploit a redundant but unreliable WSN. We present our activity in building a novel activity recognition architecture for such a dynamic system. The architecture has a hierarchical structure where simple nodes performs gesture classification and a high level meta classifiers fuses a changing number of classifier outputs. We demonstrate the benefit of such architecture in terms of increased recognition performance, and fault and noise robustness. Furthermore we show how we can extend network lifetime by performing a performance-power trade-off. Smart objects can enhance user experience within smart environments. We present our work in extending the capabilities of the Smart Micrel Cube (SMCube), a smart object used as tangible interface within a tangible computing framework, through the development of a gesture recognition algorithm suitable for this limited computational power device. Finally the development of activity recognition techniques can greatly benefit from the availability of shared dataset. We report our experience in building a dataset for activity recognition. Such dataset is freely available to the scientific community for research purposes and can be used as a testbench for developing, testing and comparing different activity recognition techniques.

Cooperative Wireless Networks for Localization

This thesis adresses the problem of localization, and analyzes its crucial aspects, within the context of cooperative WSNs. The three main issues discussed in the following are: network synchronization, position estimate and tracking. Time synchronization is a fundamental requirement for every network. In this context, a new approach based on the estimation theory is proposed to evaluate the ultimate performance limit in network time synchronization. In particular the lower bound on the variance of the average synchronization error in a fully connected network is derived by taking into account the statistical characterization of the Message Delivering Time (MDT) . Sensor network localization algorithms estimate the locations of sensors with initially unknown location information by using knowledge of the absolute positions of a few sensors and inter-sensor measurements such as distance and bearing measurements. Concerning this issue, i.e. the position estimate problem, two main contributions are given. The first is a new Semidefinite Programming (SDP) framework to analyze and solve the problem of flip-ambiguity that afflicts range-based network localization algorithms with incomplete ranging information. The occurrence of flip-ambiguous nodes and errors due to flip ambiguity is studied, then with this information a new SDP formulation of the localization problem is built. Finally a flip-ambiguity-robust network localization algorithm is derived and its performance is studied by Monte-Carlo simulations. The second contribution in the field of position estimate is about multihop networks. A multihop network is a network with a low degree of connectivity, in which couples of given any nodes, in order to communicate, they have to rely on one or more intermediate nodes (hops). Two new distance-based source localization algorithms, highly robust to distance overestimates, typically present in multihop networks, are presented and studied. The last point of this thesis discuss a new low-complexity tracking algorithm, inspired by the Fano’s sequential decoding algorithm for the position tracking of a user in a WLAN-based indoor localization system.

Packet erasure correcting codes for wireless sensor networks: implementation and field trial measurements

This thesis regards the Wireless Sensor Network (WSN), as one of the most important technologies for the twenty-first century and the implementation of different packet correcting erasure codes to cope with the ”bursty” nature of the transmission channel and the possibility of packet losses during the transmission. The limited battery capacity of each sensor node makes the minimization of the power consumption one of the primary concerns in WSN. Considering also the fact that in each sensor node the communication is considerably more expensive than computation, this motivates the core idea to invest computation within the network whenever possible to safe on communication costs. The goal of the research was to evaluate a parameter, for example the Packet Erasure Ratio (PER), that permit to verify the functionality and the behavior of the created network, validate the theoretical expectations and evaluate the convenience of introducing the recovery packet techniques using different types of packet erasure codes in different types of networks. Thus, considering all the constrains of energy consumption in WSN, the topic of this thesis is to try to minimize it by introducing encoding/decoding algorithms in the transmission chain in order to prevent the retransmission of the erased packets through the Packet Erasure Channel and save the energy used for each retransmitted packet. In this way it is possible extend the lifetime of entire network.

Identification and characterization of the sRNA network in Neisseria meningitidis

Bacterial small regulatory RNAs (sRNAs) are posttranscriptional regulators involved in stress responses. These short non-coding transcripts are synthesised in response to a signal, and control gene expression of their regulons by modulating the translation or stability of the target mRNAs, often in concert with the RNA chaperone Hfq. Characterization of a Hfq knock out mutant in Neisseria meningitidis revealed that it has a pleiotropic phenotype, suggesting a major role for Hfq in adaptation to stresses and virulence and the presence of Hfq-dependent sRNA activity. Global gene expression analysis of regulated transcripts in the Hfq mutant revealed the presence of a regulated sRNA, incorrectly annotated as an open reading frame, which we renamed AniS. The synthesis of this novel sRNA is anaerobically induced through activation of its promoter by the FNR global regulator and through global gene expression analyses we identified at least two predicted mRNA targets of AniS. We also performed a detailed molecular analysis of the action of the sRNA NrrF,. We demonstrated that NrrF regulates succinate dehydrogenase by forming a duplex with a region of complementarity within the sdhDA region of the succinate dehydrogenase transcript, and Hfq enhances the binding of this sRNA to the identified target in the sdhCDAB mRNA; this is likely to result in rapid turnover of the transcript in vivo. In addition, in order to globally investigate other possible sRNAs of N. meningitdis we Deep-sequenced the transcriptome of this bacterium under both standard in vitro and iron-depleted conditions. This analysis revealed genes that were actively transcribed under the two conditions. We focused our attention on the transcribed non-coding regions of the genome and, along with 5’ and 3’ untranslated regions, 19 novel candidate sRNAs were identified. Further studies will be focused on the identification of the regulatory networks of these sRNAs, and their targets.

Power consumption analysis for self-diagnosis of Wireless Sensor Nodes

Wireless sensor networks can transform our buildings in smart environments, improving comfort, energy efficiency and safety. Today however, wireless sensor networks are not considered reliable enough for being deployed on large scale. In this thesis, we study the main failure causes for wireless sensor networks, the existing solutions to improve reliability and investigate the possibility to implement self-diagnosis through power consumption measurements on the sensor nodes. Especially, we focus our interest on faults that generate in-range errors: those are wrong readings but belong to the range of the sensor and can therefore be missed by external observers. Using a wireless sensor network deployed in the R\&D building of NXP at the High Tech Campus of Eindhoven, we performed a power consumption characterization of the Wireless Autonomous Sensor (WAS), and studied through some experiments the effect that faults have in the power consumption of the sensor.

Progetto ed implementazione di protocolli a basso consumo energetico per reti wireless

"I computer del nuovo millennio saranno sempre più invisibili, o meglio embedded, incorporati agli oggetti, ai mobili, anche al nostro corpo. L'intelligenza elettronica sviluppata su silicio diventerà sempre più diffusa e ubiqua. Sarà come un'orchestra di oggetti interattivi, non invasivi e dalla presenza discreta, ovunque". [Mark Weiser, 1991] La visione dell'ubiquitous computing, prevista da Weiser, è ormai molto vicina alla realtà e anticipa una rivoluzione tecnologica nella quale l'elaborazione di dati ha assunto un ruolo sempre più dominante nella nostra vita quotidiana. La rivoluzione porta non solo a vedere l'elaborazione di dati come un'operazione che si può compiere attraverso un computer desktop, legato quindi ad una postazione fissa, ma soprattutto a considerare l'uso della tecnologia come qualcosa di necessario in ogni occasione, in ogni luogo e la diffusione della miniaturizzazione dei dispositivi elettronici e delle tecnologie di comunicazione wireless ha contribuito notevolmente alla realizzazione di questo scenario. La possibilità di avere a disposizione nei luoghi più impensabili sistemi elettronici di piccole dimensioni e autoalimentati ha contribuito allo sviluppo di nuove applicazioni, tra le quali troviamo le WSN (Wireless Sensor Network), ovvero reti formate da dispositivi in grado di monitorare qualsiasi grandezza naturale misurabile e inviare i dati verso sistemi in grado di elaborare e immagazzinare le informazioni raccolte. La novità introdotta dalle reti WSN è rappresentata dalla possibilità di effettuare monitoraggi con continuità delle più diverse grandezze fisiche, il che ha consentito a questa nuova tecnologia l'accesso ad un mercato che prevede una vastità di scenari indefinita. Osservazioni estese sia nello spazio che nel tempo possono essere inoltre utili per poter ricavare informazioni sull'andamento di fenomeni naturali che, se monitorati saltuariamente, non fornirebbero alcuna informazione interessante. Tra i casi d'interesse più rilevanti si possono evidenziare: - segnalazione di emergenze (terremoti, inondazioni) - monitoraggio di parametri difficilmente accessibili all'uomo (frane, ghiacciai) - smart cities (analisi e controllo di illuminazione pubblica, traffico, inquinamento, contatori gas e luce) - monitoraggio di parametri utili al miglioramento di attività produttive (agricoltura intelligente, monitoraggio consumi) - sorveglianza (controllo accessi ad aree riservate, rilevamento della presenza dell'uomo) Il vantaggio rappresentato da un basso consumo energetico, e di conseguenza un tempo di vita della rete elevato, ha come controparte il non elevato range di copertura wireless, valutato nell'ordine delle decine di metri secondo lo standard IEEE 802.15.4. Il monitoraggio di un'area di grandi dimensioni richiede quindi la disposizione di nodi intermedi aventi le funzioni di un router, il cui compito sarà quello di inoltrare i dati ricevuti verso il coordinatore della rete. Il tempo di vita dei nodi intermedi è di notevole importanza perché, in caso di spegnimento, parte delle informazioni raccolte non raggiungerebbero il coordinatore e quindi non verrebbero immagazzinate e analizzate dall'uomo o dai sistemi di controllo. Lo scopo di questa trattazione è la creazione di un protocollo di comunicazione che preveda meccanismi di routing orientati alla ricerca del massimo tempo di vita della rete. Nel capitolo 1 vengono introdotte le WSN descrivendo caratteristiche generali, applicazioni, struttura della rete e architettura hardware richiesta. Nel capitolo 2 viene illustrato l'ambiente di sviluppo del progetto, analizzando le piattaforme hardware, firmware e software sulle quali ci appoggeremo per realizzare il progetto. Verranno descritti anche alcuni strumenti utili per effettuare la programmazione e il debug della rete. Nel capitolo 3 si descrivono i requisiti di progetto e si realizza una mappatura dell'architettura finale. Nel capitolo 4 si sviluppa il protocollo di routing, analizzando i consumi e motivando le scelte progettuali. Nel capitolo 5 vengono presentate le interfacce grafiche utilizzate utili per l'analisi dei dati. Nel capitolo 6 vengono esposti i risultati sperimentali dell'implementazione fissando come obiettivo il massimo lifetime della rete.