(Table S1) Original element/Ca data for the OGA and Tahiti corals

[1] Previous studies have demonstrated the potential for the Li content of coral aragonite to record information about environmental conditions, but no detailed study of tropical corals exists. Here we present the Li and Mg to Ca ratios at a bimonthly to monthly resolution over 25 years in two modern Porites corals, the genus most often used for paleoclimate reconstructions in the tropical Indo-Pacific. A strong relationship exists between coral Li/Ca and locally measured SST, indicating that coral Li/Ca can be used to reconstruct tropical SST variations. However, Li/Ca ratios of the skeleton deposited during 1979-1980 do not track local SST well and are anomalously high in places. The Mg/Ca ratios of this interval are also anomalously high, and we suggest Li/Ca can be used to reconstruct tropical SST only when Mg/Ca data are used to carefully screen for relatively rare biological effects. Mg/Li or Li/Mg ratios provide little advantage over Li/Ca ratios, except that the slope of the Li/Mg temperature relationship is more similar between the two corals. The Mg/Li temperature relationship for the coral that experienced a large temperature range is similar to that found for cold water corals and aragonitic benthic foraminifera in previous studies. The comparison with data from other biogenic aragonites suggests the relationship between Li/Mg and water temperature can be described by a single exponential relationship. Despite this hint at an overarching control, it is clear that biological processes strongly influence coral Li/Ca, and more calibration work is required before widely applying the proxy.

Bones collection of Lena Delta reserve Tiksi, Appendix 4-6

Remains of large Pleistocene mammals always attract attention. Scientists and local people who work and live in the Laptev Sea Region find and collect various bones and fragments of large mammals. Some of them are brought to the Lena Delta Reserve. Mammal remains of the "Mammoth fauna" are the most common artifacts in the paleontological collection of the Lena Delta Reserve museum. The collection includes single bones, fragments of skeletons, bones with soft tissues and hair of Late Pleistocene and Holocene specimens. It consists of nearly 300 samples. The museum was created thanks to the enthusiasm of Dr. A. Gukov, the present director of the reserve. Employees of the reserve, school teachers, pupils and other interested people also contribute. The first specimens were collected in 1985. They were bison bones collected by Yarlykov Yu. A. on Makar Island (Yana Delta Region) near the Makar polar station; Efimov S. N. found horse and reindeer bones on the Myostakh Cape, Bykovsky Peninsula (Lena Delta Region). Mammoth and reindeer bones were collected by Gukov A. Yu. during the same year on Kurungnakh-Sise Island. Over more than 20 years many people have presented their finds to the reserve. These are samples from different islands of the Lena Delta Region, from the New Siberian Islands, from the Yana Delta Region, and from the southern coasts of the Laptev and East Siberian Seas. Most of the collection consists of bones from the Bykovsky Peninsula (about 100 samples) as well as from the islands of the Lena Delta Region. Unfortunately not all samples have exact information about their origins or is geological information available for all finds. It is typical for this exhibition that the finds were collected by amateurs (not during geological or paleontological expeditions). A considerable portion of the collection consists of finds of Dr. A. Gukov from different locations within the Lena Delta Reserve. In 2001 Dr. A. Sher delivered about 40 samples from the Bykovsky Peninsula (Mamontovy Khayata) to the museum.

Seawater carbonate chemistry, thickness and carbonate elemental composition of the test of juvenile sea urchins in a laboratory experiment

Continuous anthropogenic CO2 emissions to the atmosphere and uptake by the oceans will cause a reduction of seawater pH and saturation state (Omega) of CaCO3 minerals from which marine calcifiers build their shells and skeletons. Sea urchins use the most soluble form of calcium carbonate, high-magnesium calcite, to build their skeleton, spines and grazing apparatus. In order to highlight the effects of increased pCO2 on the test thickness and carbonate elemental composition of juvenile sea urchins and potential differences in their responses linked to the diet, we performed a laboratory experiment on juvenile Paracentrotus lividus, grazing on calcifying (Corallina elongata) and non-calcifying (Cystoseira amentacea, Dictyota dichotoma) macroalgae, under different pH (corresponding to pCO2 values of 390, 550, 750 and 1000 µatm). Results highlighted the importance of the diet in determining sea urchin size irrespectively of the pCO2 level, and the relevance of macroalgal diet in modulating urchin Mg/Ca ratio. The present study provides relevant clues both in terms of the mechanism of mineral incorporation and in terms of bottom-up processes (algal diet) affecting top-down ones (fish predation) in rocky subtidal communities

Responses of the tropical gorgonian coral Eunicea fusca to ocean acidification conditions

Ocean acidification can have negative repercussions from the organism to ecosystem levels. Octocorals deposit high-magnesium calcite in their skeletons, and according to different models, they could be more susceptible to the depletion of carbonate ions than either calcite or aragonite-depositing organisms. This study investigated the response of the gorgonian coral Eunicea fusca to a range of CO2 concentrations from 285 to 4,568 ppm (pH range 8.1-7.1) over a 4-week period. Gorgonian growth and calcification were measured at each level of CO2 as linear extension rate and percent change in buoyant weight and calcein incorporation in individual sclerites, respectively. There was a significant negative relationship for calcification and CO2 concentration that was well explained by a linear model regression analysis for both buoyant weight and calcein staining. In general, growth and calcification did not stop in any of the concentrations of pCO2; however, some of the octocoral fragments experienced negative calcification at undersaturated levels of calcium carbonate (>4,500 ppm) suggesting possible dissolution effects. These results highlight the susceptibility of the gorgonian coral E. fusca to elevated levels of carbon dioxide but suggest that E. fusca could still survive well in mid-term ocean acidification conditions expected by the end of this century, which provides important information on the effects of ocean acidification on the dynamics of coral reef communities. Gorgonian corals can be expected to diversify and thrive in the Atlantic-Eastern Pacific; as scleractinian corals decline, it is likely to expect a shift in these reef communities from scleractinian coral dominated to octocoral/soft coral dominated under a "business as usual" scenario of CO2 emissions.

Database on the molluscan fauna from the Mediterranean Reef Ecosystems (CorMolDB - Part I)

In the Mediterranean Sea, infralittoral and circalittoral rocky bottoms (from 15 to 120 m) are characterized by a biogenic habitat, named "coralligenous", formed by the concretion of calcareous organisms, mainly algal thalli, and- to a lesser extent- by animal skeletons. This complex habitat is inhabited by a rich fauna that belongs to different taxonomic groups. Sponges, bryozoans, cnidarians and ascidians are the most common sessile organisms that inhabit the area while crustacean and molluscs are the common mobile organisms. Little information on the diversity of the molluscs that thrive in the coralligenous habitat is known while this information is highly important for biodiversity management purposes. After thoroughly studying the available and accessible published literature, a database for the molluscs of the coralligenous habitat has been designed and implemented for the collection and management of this information. From its index compilation more than 511 species of molluscs have been recorded so far from the coralligenous formations, the majority of which belongs to the class Gastropoda (357 sp.) followed by the Bivalvia (137 sp.), Polyplacophora (14 sp.), Cephalopoda (2 sp.) and Scaphopoda (1 sp.). Among these, the gastropod Luria lurida (Linnaeus, 1758) and Charonia lampas (Linnaeus, 1758), the endemic bivalve Pinna nobilis Linnaeus, 1758 and the endolithic bivalve Lithophaga lithophaga (Linnaeus, 1758), are protected by international conventions.

Hydration of C3S, C2S and their Blends. Micro- and Nanoscale Characterization

This study forms part of wider research conducted under a EU 7 th Framework Programme (COmputationally Driven design of Innovative CEment-based materials or CODICE). The ultimate aim is the multi-scale modelling of the variations in mechanical performance in degraded and non-degraded cementitious matrices. The model is being experimentally validated by hydrating the main tri-calcium silicate (T1-C3S) and bi-calcium silicate (β-C2S), phases present in Portland cement and their blends. The present paper discusses micro- and nanoscale studies of the cementitious skeletons forming during the hydration of C3S, C2S and 70 % / 30 % blends of both C3S/C2S and C2S/C3S with a water/cement ratio of 0.4. The hydrated pastes were characterized at different curing ages with 29 Si NMR, SEM/TEM/EDS, BET, and nanoindentation. The findings served as a basis for the micro- and nanoscale characterization of the hydration products formed, especially C-S-H gels. Differences were identified in composition, structure and mechanical behaviour (nanoindentation), depending on whether the gels formed in C3S or C2S pastes. The C3S gels had more compact morphologies, smaller BET-N2 specific surface area and lesser porosity than the gels from C2S-rich pastes. The results of nanoindentation tests appear to indicate that the various C-S-H phases formed in hydrated C3S and C2S have the same mechanical properties as those formed in Portland cement paste. Compared to the C3S sample, the hydrated C2S specimen was dominated by the loose-packed (LP) and the low-density (LD) C-S-H phases, and had a much lower content of the high density (HD) C-S-H phase

Mapping of mechanical properties of cement paste microstructures

The presented study is related to the EU 7 th Framework Programme CODICE (COmputationally Driven design of Innovative CEment-based materials). The main aim of the project is the development of a multi-scale model for the computer based simulation of mechanical and durability performance of cementitious materials. This paper reports results of micro/nano scale characterisation and mechanical property mapping of cementitious skeletons formed by the cement hydration at different ages. Using the statistical nanoindentation and micro-mechanical property mapping technique, intrinsic properties of different hydrate phases, and also the possible interaction (or overlapping) of different phases (e.g. calcium-silcate-hydrates) has been studied. Results of the mapping and statistical indentation testing appear to suggest the possible existence of more hydrate phases than the commonly reported LD and HD C-S-H and CH phases

A review of estimation of distribution algorithms in bioinformatics

Evolutionary search algorithms have become an essential asset in the algorithmic toolbox for solving high-dimensional optimization problems in across a broad range of bioinformatics problems. Genetic algorithms, the most well-known and representative evolutionary search technique, have been the subject of the major part of such applications. Estimation of distribution algorithms (EDAs) offer a novel evolutionary paradigm that constitutes a natural and attractive alternative to genetic algorithms. They make use of a probabilistic model, learnt from the promising solutions, to guide the search process. In this paper, we set out a basic taxonomy of EDA techniques, underlining the nature and complexity of the probabilistic model of each EDA variant. We review a set of innovative works that make use of EDA techniques to solve challenging bioinformatics problems, emphasizing the EDA paradigm's potential for further research in this domain.

A mathematical framework for finite strain elastoplastic consolidation. Part 1: Balance laws, variational formulation, and linearization

A mathematical formulation for finite strain elasto plastic consolidation of fully saturated soil media is presented. Strong and weak forms of the boundary-value problem are derived using both the material and spatial descriptions. The algorithmic treatment of finite strain elastoplasticity for the solid phase is based on multiplicative decomposition and is coupled with the algorithm for fluid flow via the Kirchhoff pore water pressure. Balance laws are written for the soil-water mixture following the motion of the soil matrix alone. It is shown that the motion of the fluid phase only affects the Jacobian of the solid phase motion, and therefore can be characterized completely by the motion of the soil matrix. Furthermore, it is shown from energy balance consideration that the effective, or intergranular, stress is the appropriate measure of stress for describing the constitutive response of the soil skeleton since it absorbs all the strain energy generated in the saturated soil-water mixture. Finally, it is shown that the mathematical model is amenable to consistent linearization, and that explicit expressions for the consistent tangent operators can be derived for use in numerical solutions such as those based on the finite element method.

Elastoplastic consolidation at finite strain. Part 2: finite element implementation and numerical examples

A mathematical model for finite strain elastoplastic consolidation of fully saturated soil media is implemented into a finite element program. The algorithmic treatment of finite strain elastoplasticity for the solid phase is based on multiplicative decomposition and is coupled with the algorithm for fluid flow via the Kirchhoff pore water pressure. A two-field mixed finite element formulation is employed in which the nodal solid displacements and the nodal pore water pressures are coupled via the linear momentum and mass balance equations. The constitutive model for the solid phase is represented by modified Cam—Clay theory formulated in the Kirchhoff principal stress space, and return mapping is carried out in the strain space defined by the invariants of the elastic logarithmic principal stretches. The constitutive model for fluid flow is represented by a generalized Darcy's law formulated with respect to the current configuration. The finite element model is fully amenable to exact linearization. Numerical examples with and without finite deformation effects are presented to demonstrate the impact of geometric nonlinearity on the predicted responses. The paper concludes with an assessment of the performance of the finite element consolidation model with respect to accuracy and numerical stability.

Modelización del registro y proceso de datos espectrales, referidos a superficies líticas, en un ámbito arqueológico.

La determinación del origen de un material utilizado por el hombre en la prehistoria es de suma importancia en el ámbito de la arqueología. En los últimos años, los estudios de procedencia han utilizado técnicas que suelen ser muy precisas pero con el inconveniente de ser metodologías de carácter destructivo. El fenómeno de la minería a gran escala es una de las características que acompaña al Neolítico, de ahí que la revolución correspondiente a este periodo sea una de las etapas más importantes para la humanidad. El yacimiento arqueológico de Casa Montero es una mina de sílex neolítica ubicada en la Península Ibérica, de gran importancia por su antigüedad y su escala productiva. Este sitio arqueológico corresponde a una cantera de explotación de rocas silícicas desarrollada en el periodo neolítico en la que solamente se han encontrado los desechos de la extracción minera, lo cual incrementa la variabilidad de las muestras analizadas, de las que se desconoce su contexto económico, social y cultural. Es de gran interés arqueológico saber por qué esos grupos neolíticos explotaban de forma tan intensiva determinados tipos de material y cuál era el destino de la cadena productiva del sílex. Además, por ser una excavación de rescate, que ha tenido que procesar varias toneladas de material, en un tiempo relativamente corto, requiere de métodos expeditivos de clasificación y manejo de dicho material. Sin embargo,la implementación de cualquier método de clasificación debe evitar la alteración o modificación de la muestra,ya que,estudios previos sobre caracterización de rocas silícicas tienen el inconveniente de alterar parcialmente el objeto de estudio. Por lo que el objetivo de esta investigación fue la modelización del registro y procesamiento de datos espectrales adquiridos de rocas silícicas del yacimiento arqueológico de Casa Montero. Se implementó la metodología para el registro y procesamiento de datos espectrales de materiales líticos dentro del contexto arqueológico. Lo anterior se ha conseguido con la aplicación de modelos de análisis espectral, algoritmos de suavizado de firmas espectrales, reducción de la dimensionalidad de las características y la aplicación de métodos de clasificación, tanto de carácter vectorial como raster. Para la mayoría de los procedimientos se ha desarrollado una aplicación informática validada tanto por los propios resultados obtenidos como comparativamente con otras aplicaciones. Los ensayos de evaluación de la metodología propuesta han permitido comprobar la eficacia de los métodos. Por lo que se concluye que la metodología propuesta no solo es útil para materiales silícicos, sino que se puede generalizar en aquellos procesos donde la caracterización espectral puede ser relevante para la clasificación de materiales que no deban ser alterados, además, permite aplicarla a gran escala, dado que los costes de ejecución son mínimos si se comparan con los de métodos convencionales. Así mismo, es de destacar que los métodos propuestos, representan la variabilidad del material y permiten relacionarla con el estado del yacimiento, según su contenido respecto de las tipologías de la cadena operativa. ABSTRACT: The determination of the origin of a material used by man in prehistory is very important in the field of archaeology. In recent years the provenance studies have used techniques that tend to be very precise but with the drawback of being destructive methodologies. The phenomenon of mining on a large scale is a feature that accompanies the Neolithic period; the Neolithic revolution is one of the most important periods of humanity. The archaeological site of Casa Montero is a Neolithic flint mine located in the Iberian Peninsula of great importance for its antiquity and its scale. This archaeological site corresponds to a quarry exploitation of silicic rocks developed in the Neolithic period, in which only found debris from mining, which increases the variability of the samples analyzed, including their economic, social and cultural context is unknown. It is of great archaeological interest to know why these Neolithic groups exploited as intensive certain types of material and what the final destination of flint was in the productive chain. In addition, being an excavation of rescue that had to process several tons of material in a relatively short time requires expeditious methods of classification and handling of the material. However, the implementation of any method of classification should avoid the alteration or modification of the sample, since previous studies on characterization of silicic rocks have the disadvantage of destroying or partially modify the object of study. So the objective of this research wasthe modeling of the registration and processing of acquired spectral data of silicic rocks of the archaeological site of Casa Montero. The methodology implemented for modeling the registration and processing of existing spectral data of lithic materials within the archaeological context, was presented as an alternative to the conventional classification methods (methods destructive and expensive) or subjective methods that depend on the experience of the expert. The above has been achieved with the implementation of spectral analysis models, smoothing of spectral signatures and the dimensionality reduction algorithms. Trials of validation of the proposed methodology allowed testing the effectiveness of the methods in what refers to the spectral characterization of siliceous materials of Casa Montero. Is remarkable the algorithmic contribution of the signal filtering, improve of quality and reduction of the dimensionality, as well the proposal of using raster structures for efficient storage and analysis of spectral information. For which it is concluded that the proposed methodology is not only useful for siliceous materials, but it can be generalized in those processes where spectral characterization may be relevant to the classification of materials that must not be altered, also allows to apply it on a large scale, given that the implementation costs are minimal when compared with conventional methods.