Y-chromosome evidence for no independent origin of modern human in China

East Asia is one of the few regions in the world where a large number of human fossils have been unearthed. The continuity of hominid fossils in East Asia, particularly in China has been presented as strong evidence supporting an independent origin of mod

In vitro phagocytic study of blood leucocytes and peritoneal macrophages of walking catfish Clarias batrachus ( Ham.) against Aeromonas hydrophila and Escherichia coli.

In observation of in vitro phagocytic activity against Aeromonas hydrophila isolate 34k (a virulent form) and Escherichia coli (an avirulent bacteria) of neutrophil- and monocyte-like cells of walking catfish Clarias batrachus showed phagocytosis. N eutrophils and monocytes phagocytized the avirulent form of bacterial isolate more than the virulent one. Other blood leucocytes did not show phagocytosis. Peritoneal macrophage of the fish were separated by glycogen elicitation and the macrophages were being adhered on plastic cover slips for studying their in vitro phagocytic activity. Most of the cells were alive after adherence and showed phagocytosis against the virulent and avirulent bacteria. The percent phagocytosis and phagocytic index were higher against the avirulent E. coli than the virulent A. hydrophila.

Effect of low cost feed on the production of walking catfish, Clarias batrachus in farmer's ponds

A feeding trial was conducted for six months in farmer's ponds to assess the performance of BFRI formulated catfish feed on the growth and survival of Clarias batrachus (L.). Nine interested farmers and their ponds (size range: 10-15 dec) in the Barera union of Mymensingh Sadar were selected. The ponds were divided into 3 treatments each with 3 replications. Among the three treatment diets, two diets - traditional (F1) and BFRI formulated (F3) were prepared by using low cost agro-based locally available ingredients and the commercial diets was Saudi-Bangla Grower-1 (F2). The diets were designed as F1, F2 and F3 for traditional (20.40% protein), Commercial (31% protein) and BFRI formulated (30.44% protein) diets respectively. The fingerlings of catfish (7.3 g) were collected from local fish vendors and stocked at the rate of 100/dec. Feeding rates were adjusted by weight after fortnightly sampling of fish. Feeding rate were 10 and 8% of the total body weight respectively for 1st, 2nd month and 5% for the rest of the experimental period. The range of some selected water quality parameters were as follows: dissolved oxygen 4.0 - 7.4 mg/l, temperature 24.0°- 33.9°C, pH 6.8 - 8.00, and transparency 17.0 - 32.00 cm. Which showed suitability of the ponds for rearing fish. At the end of the experiment, significantly highest gain (p<0.05) in weight (1210.96% ±87) and lowest gain in weight (865.25% ±90) were observed in the group of fish fed on diets F3 and F1 respectively. However, no significant differences in growth (p>0.05) was observed in fish fed on commercial diet (F2) and BFRI formulated diet (F3). The FCR value ranged between 2.00 and 2.80 with the traditional diet (F1) showing significantly lower FCR. The total production of fish ranged between 1398.08 and 2145.34 kg/ha with F3 diet resulting in the highest production and net profit. A simple economic analysis showed that fish fed with BFRI formulated (F3) diet resulted in the highest net profit in farmer's pond.

Nursery management system of stinging catfish, Heteropneustes fossilis and walking catfish, Clarias batrachus in Bangladesh

A total of four experiments were conducted to develop nursery management system for the two important native catfishes viz. stinging catfish, Heteropneustes fossilis and walking catfish, Clarias batrachus during 2003 and 2004. Two experiments were conducted in on-station condition to determine stocking density efficacy in hapa and in earthen mini ponds for H. fossilis. This was followed by on-farm trial on stocking density in earthen mini ponds. In hapa, the highest survival rate was 60% for H. fosssilis at stocking density of 100/square meter; followed by 54.5 and 50% at stocking densities of 150 and 200/square meter, respectively. Similarly, gain in weight and length was also better in lower stocking densities. Similar survival rate (45 to 55%) was observed in three densities in earthen mini ponds. However, gain in weight and length showed no significant (p<0.05) differences. H. fossilis, C. batrachus showed almost similar survival rates (57.5-59.0%) in all the three stocking densities (100, 150 and 200/square meter) in earthen mini ponds in on-station condition. In terms of gain in weight and length showed no significant (p<0.05) differences in pond conditions. Almost similar result was obtained in terms of growth and survival in on-farm condition.

Independent origin of the growth hormone gene family in New World monkeys and Old World monkeys/hominoids

The growth hormone (GH) gene family represents an erratic and complex evolutionary pattern, involving many evolutionary events, such as multiple gene duplications, positive selection, the birth-and-death process and gene conversions. In the present study, we cloned and sequenced GH-like genes from three species of New World monkeys (NWM). Phylogenetic analysis strongly suggest monophyly for NWM GH-like genes with respect to those of Old World monkeys (OWM) and hominoids, indicating that independent gene duplications have occurred in NWM GH-like genes. There are three main clusters of genes in putatively functional NWM GH-like genes, according to our gene tree. Comparison of the ratios of nonsynonymous and synonymous substitutions revealed that these three clusters of genes evolved under different kinds of selective pressures. Detailed analysis of the evolution of pseudogenes showed that the evolutionary pattern of this gene family in platyrrhines is in agreement with the so-called birth-and-death process.

Strikingly different penetrance of LHON in two Chinese families with primary mutation G11778A is independent of mtDNA haplogroup background and secondary mutation G13708A

The penetrance of Leber's hereditary optic neuropathy (LHON) in families with primary mitochondrial DNA (mtDNA) mutations is very complex. Matrilineal and nuclear genetic background, as well as environmental factors, have been reported to be involved in d

Duplication and independent selection of cell-wall invertase genes GIF1 and OsCIN1 during rice evolution and domestication

Background: Various evolutionary models have been proposed to interpret the fate of paralogous duplicates, which provides substrates on which evolution selection could act. In particular, domestication, as a special selection, has played important role in crop cultivation with divergence of many genes controlling important agronomic traits. Recent studies have indicated that a pair of duplicate genes was often sub-functionalized from their ancestral functions held by the parental genes. We previously demonstrated that the rice cell-wall invertase (CWI) gene GIF1 that plays an important role in the grain-filling process was most likely subjected to domestication selection in the promoter region. Here, we report that GIF1 and another CWI gene OsCIN1 constitute a pair of duplicate genes with differentiated expression and function through independent selection. Results: Through synteny analysis, we show that GIF1 and another cell-wall invertase gene OsCIN1 were paralogues derived from a segmental duplication originated during genome duplication of grasses. Results based on analyses of population genetics and gene phylogenetic tree of 25 cultivars and 25 wild rice sequences demonstrated that OsCIN1 was also artificially selected during rice domestication with a fixed mutation in the coding region, in contrast to GIF1 that was selected in the promoter region. GIF1 and OsCIN1 have evolved into different expression patterns and probable different kinetics parameters of enzymatic activity with the latter displaying less enzymatic activity. Overexpression of GIF1 and OsCIN1 also resulted in different phenotypes, suggesting that OsCIN1 might regulate other unrecognized biological process. Conclusion: How gene duplication and divergence contribute to genetic novelty and morphological adaptation has been an interesting issue to geneticists and biologists. Our discovery that the duplicated pair of GIF1 and OsCIN1 has experiencedsub-functionalization implies that selection could act independently on each duplicate towards different functional specificity, which provides a vivid example for evolution of genetic novelties in a model crop. Our results also further support the established hypothesis that gene duplication with sub-functionalization could be one solution for genetic adaptive conflict.

Dietary protein and energy interations: an approach to optimizing dietary protein to energy ratio in walking catfish, Clarias batrachus

An 8 weeks feeding trial was conducted in a static indoor rearing system to investigate protein to energy ratio (PIE ratio) in walking catfish Clarias batrachus. Six fishmeal based diets of two protein levels (25 and 35%), each with three lipid levels (5, 10 and 15%) resulted in P/E ratios ranging from 13.57 to 21.97 mg protein kJˉ¹ gross energy (GE) were fed to 50 fish in triplicate. Fish were fed 6% of their body weight three times per day adjusted fortnightly. Significantly higher (p<0.05) growth rates in terms of weight gain, % weight gain and specific growth rate (SGR) were evident in fish fed with higher protein diet. The highest growth rate was found by fish fed 35% protein, 17.06 kJˉ¹GE with a P/E ratio of 20.55 mg protein kJˉ¹GE. Significantly better (p<0.05) feed conversion ratio (FCR) was also evident in fish fed with higher protein diet and best FCR was found by fish fed 35% protein, 10% lipid, 17.06 kJˉ¹GE with a P/E ratio of 20.55 mg protein kJˉ¹GE. Significantly indifferent (p>0.05) values of protein utilisation were found in between the both (higher and lower) protein diets. Higher lipid deposition (p<0.05) in whole body was observed with increasing dietary lipid level at each protein diet and as higher (p<0.05) for the lower protein diets. The study reveals that C. batrachus performed best the diet containing 35%, 17.06 kJ gˉ¹ and 20.55 mg protein kJ gˉ¹ GE protein, gross energy and P/E ratio respectively.