Distribuição geográfica de pequenos mamíferos não voadores nas bacias dos rios Araguaia e Paraná, região centro-sul do Brasil

Realizaram-se amostragens de pequenos mamíferos em duas bacias hidrográficas do Brasil central pertencentes aos rios Araguaia e Paraná com intuito de descrever a composição de espécies de pequenos mamíferos de hábito florestal e comparar suas distribuições geográficas. Quatorze pontos de coleta foram amostrados, subdivididos em oito na bacia do Rio Paraná e seis na bacia do Rio Araguaia. Foram registradas 20 espécies de pequenos mamíferos na região (oito de marsupiais e 12 de roedores), sendo 16 delas por meio de armadilhas metálicas (5.253 armadilhas-noite) e oito delas por meio de armadilhas de queda (224 baldes-noite), totalizando 161 capturas de 139 indivíduos. A bacia do Rio Paraná apresentou 16 espécies (armadilhas-noite: 3.115; baldes-noite: 104) e a bacia do Araguaia apresentou 11 espécies (armadilhas-noite: 2.138; baldes-noite: 120), sendo que as riquezas foram similares quando aplicado o método da rarefação. Das 20 espécies registradas, sete (35%) ocorreram em ambas as bacias. Apesar da elevada riqueza de espécies amostrada, destacou-se a elevada abundância do marsupial Didelphis albiventris Lund, 1840. As espécies de marsupiais amostradas foram D. albiventris, Caluromys philander (Linnaeus, 1758), Cryptonanus cf. agricolai Voss, Lunde & Jansa, 2005, Gracilinanus agilis (Burmeister, 1854), G. microtarsus (Wagner, 1842), Lutreolina crassicaudata (Desmarest, 1804), Marmosa murina (Linnaeus, 1758), e Philander opossum (Linnaeus, 1758). As espécies de roedores amostradas foram Akodon gr. cursor, Calomys tener (Winge, 1887), Nectomys rattus (Pelzen, 1883), N. squamipes (Brants, 1827), Oecomys bicolor (Tomes, 1860), Oryzomys maracajuensis Langguth & Bonvicino, 2002, Oryzomys cf. marinhus, O. megacephalus (Fischer, 1814), Oligoryzomys fornesi (Massoia, 1973), Oligoryzomys sp., Proechimys longicaudatus (Rengger, 1830) e P. roberti (Thomas, 1901). A ampliação da distribuição de algumas espécies é discutida, assim como aspectos biogeográficos. A Serra dos Caiapós pode ter sido uma barreira geográfica para algumas espécies de pequenos mamíferos em face da retração e expansão das florestas ocorridas no passado.

Diet and functional feeding groups of Chironomidae (Diptera) in the Middle Paraná River floodplain (Argentina)

The gut contents of nine genera of benthic Chironominae and Tanypodinae from the Middle Paraná River floodplain habitats (a lake and a secondary channel) were analyzed to determine their feeding patterns and functional feeding groups. Amorphous detritus, animal and vegetal tissues, and mineral materials (predominantly sand) were observed in the larval guts. Amorphous detritus were the main food item found for Polypedilum (Tripodura) sp., Chironomus gr. decorus sp., Endotribelos sp., Phaenopsectra sp., Cladopelma sp., and Pelomus sp. (Chironominae), while animal tissues (mainly oligochaetes) were the most important food item found for Ablabesmyia (Karelia) sp., Coelotanypus sp., and Procladius sp. (Tanypodinae). Dietary overlap was calculated for all pairs of genera. Within predators, the highest overlap was obtained between Coelotanypus sp. and Ablabesmyia (Karelia) sp., while within detritivores the highest niche overlap was obtained between Endotribelos sp. and Phaenopsectra sp.

Contribuição para o conhecimento da intoxicação pelo veneno dos "escorpiões"

Nous avons travaillé à Bello Horizonte, Etat de Minas, avec le venin de 4 espèces de Scorpions: Tityus bahiensis (C. L. KOCK, 1836). Tityus serrulatus (LUTZ-MELLO, 1922). Tityus dorsomaculatus (LUTZ – MELLO, 1922). Bothriurus (espèce em étude), sur un total de 13.640 individus. Nous avons essayé et observe l’action du venin sur 97 espèces differentes d’êtres vivants – depuis les chlamydozoaires jusqu’à l’«Homo sapiens». Nous avons cherché à déterminer une unité toxique «plus précise, plus régulierè». Les étalons dits «unité vésicule», «unité morsure» sont inconstants et sans rigueur. Tout au plus, peuvent ils server à l’étude de l’action générale du venin, et cela meme, dans certains cas seulement. Nous avons employé la pesée pour determiner l’unité toxique. Ce qui est important pour qui étudie ces sujets ce n’est pás lê nombre de vésicules, mais bien la quantité de venin humide ou desséché qu’elles contiennent. La balance, pour notre travail, est um moyen indicateur de bien plus grande précision que la «vésicule» ou la «morsure». Nous sommes parvenus à prouver qu’il existe une relation constante entre le poid brut des vésicules et la quantité de venin humide ou desséché qu’elles contiennent dans leur intérieur. Donc em pesant les vésicules, nous pesons indirectement le venin. Peu nous importe qu’il y ait 10 ou 100 vésicules. Il nous importe seulement de savoir combien elles pèsent, et de déterminer par ce fait, la quantité proportionnelle de vain pur. La technique générale est la suivante: Nous pesons um certain nombre de vésicules. Nous triturons ensuite, dans um mortier stérilisé et nous emulsionnons, par l’addition consécutive d’eau distillée, stérilisée. Nous filtrons l’émulsion sur le papier filtre employé em chimie, préalablement taré et desséché dans une atmosphere de chlorure de calcium. Après le filtrage on sèche à nouveau les papiers filtre employés d'abord à l'étuve et ensuite dans la même atmosphère de chlorure de calcium. Nous pesons plusieurs fois et on obtient la moyenne de ces pesées. On soustrait de cette dernière pesée le taux des substances non venimeuses, glandulaires, également dissoutes et calculées à 23 du poids brut et celles retenues par les papiers,-on obtient ainsi la moyenne réelle du venin pur contenu dans les vésicules utilisèés. Une simple divisiôn suffit pour fixer la moyenne de chacune. Ces données ont été vérifiées par les expériences faites avec du venin pur, largement obtenu dans notre Laboratoire. Nous avons trouvé de la sorte pour une vésicule de Tityus serrulatus: 0,gr.000,386 de T. bahiensis: 0,gr.001.261.24 de venin pur ce qui donne. 7/15,96 pour la 1ère. 1/8,36 pour la 2ème du poids sec de chaque vésicule. Le poids sec, pour une moyenne obtenue de 1.000 vésicules, fut de 0,gr.008,236 pour Tityus bahiensis. Maximum 0,gr.011. Minimum 0,gr.004.4 pour chacun. Pour Tityus serrulatus, en 1.049 vésicules le poids fut de 0,gr.006,08. Maximum 0,gr.014.03. Minimum 0,gr.003,1 pour chacun. C'est pour cette raison que l'unité-vésicule est incertaine. 2 poules A et B.; l'une, A, pesant 2 K.030 gr. reçoit dans une veinè, une émulsion en sèrum physiologique à 8,50/%, stérilisé, de 19 vésicules totales de Tityus serrulatus, et présence de légers phénomènes toxiques. L'autre, B, pesant 2 K.320 gr. meurt avec tous les phénomènes classiques de l'empoisonnement, par l'injection endoveineuse del'émulsion de 16 vésicules totales de venin de Tityus serrulatus! Les premières 19 vésicules pesaient 0,gr.58; les 16 derniéres-84 milligrammes. Les premières contenaient 0,gr.003. 634 et les secondes 0,gr.005.263 de venin pur! La moyenne obtenue de 6346 scorpions, (entre T. bahiensis et T. serrulatus) nous a fourni pour chacun: 0,gr.000,131,53 de venin pur, par piqûre. Si l'on spécifie: Pour 5.197 T. bahiensis. La moyenne pour une piqûre est 0,gr.000.106.15. Pour 1.149 T. serrulatus, la moyenne pour une piqûre est.......0,gr.000.246.30. La quantité a varié, selon les individus, de 0,gr.000.035.71, à 0,gr.000.436.01 de venin pur, pour une piqûre. D'après ce qui vient d'étre dit, on peut voir combien la quantité de venin éjaculé varie, chaque fois, chez les scorpions. L'unité-piqûre ne peut done pas ètre utiliseé pour des expériences dèlicates. Le mieux est de se servir de venin pur, et c'est ce que nous avons fait pour les expériences minutieuses. Quand on n'en possède pas, on peut établir pour chaque série des expériences à tenter-la dose minima mortelle en poids (grammes et fractions) de vésicules. D'après les bases ici consignées, et avec une trés petite erreur, on peut calculer la quantité de venin pur de cette dóse. Ce calcul est d'ailleurs dispensable. On peut s'en rapporter simplement au poids sec des vésicules totales et dire que la D. m. m. est de tant de milligr. secs. Comme le venin se conserve mal dans les vésicules, il faut, dans ce procédé, doser la D. m. m. toutes les fois que l'on veut procéder á une sériê d'expériences. Le venin desséché rappelle, d'après le temps de conservations au Laboratoire, celui de Crotatus terrificus et celui des Lachesis (quand il est vieux). Il est retenu au passage en partie, par les bougies Berkfeld et Chamberland. La conservation en état de dessication est la meilleure. Ainsi gardé, à l'abri de la lumierè, aux approches de 0,gr., pendant 8 mois, il perd à peine 1,2 à 1,4 de sa valeur primitive. L'echauffement à 100 gr. trouble une dissolution de venin dans l'eau distilleé; sans atteindre toutefois son pouvoir toxique, quand on l'injecte par la voie intra-cérébrale. Nous avons fait l'experience par 11 voies diverses. Sur des animaux sensibles, nous n'avons pas obtenu de phénomènes toxiques, apparemment, par les voies suivantes: 1) buccale; 2) gastrique; 3) rectale; 4) chambre oculaire antérieure; 5) cornéenne; 6) trachéenne; 7) meningée {sur; intra; 8) simple contact, bien que direct, avec le systemè nerveux central. La gravité des phènomènes décroît suivant l'échelle ci-dessous: 1) intra-cérébrale...

Patogenia da anemia na Ancilostomose: portadores de parasitos - relação entre a atividade do helminto e a deficiencia de ferro na genese da doença

Recapitulamos, neste trabalho, os principais dados que documentam a existencia de portadores de parasitos na ancilostomose, o papel da nutrição nesta doença e nas anemias em geral, e tambem as diversas concepções sôbre a patogenia dessa verminose. Apresentamos cinco casos de ancilostomose com graves anemias (Hb. de 13 a 30%), curados e assim conservados mediante diaria administração de ferro, durante lomgo tempo (3 a 10 mêses), apesár da persistencia de infestações muito intensas (25 a 40 mil ovos de ancilostomo por gr. de fezes). No periodo da manutenção fôram feitos diferentes exames, que mostraram quasi sempre cifras normais ou muito proximamente normais, persistindo, entretanto, uma intensa eosinofilia no sangue periferico. Fica assim constatado quais as perturbações corrigidas pelo ferro e quais as derivadas de uma ação direta do verme parasito. Discutimos, finalmente, a pouca ação dos processos diretos resultante da atividade do helminto, em relação á influencia preponderante da alimentação, salientando-se nesta última a importancia essencial da riqueza em ferro.

Biologia do saguirú (Characidae, Curimatinae)

In Brazil all the fishes belonging to the sub-family Curimatinae are called « saguirú ». The present work gives a biological study of the Curimatus elegans Steind., a small fish without any economical importance, which is to be found along the whole brazilian coast, down till Paraguay. The specimens utilized for the present study come from Fortaleza (Ceará, north-eastern Brazil). The C. elegans is « ilyophagus », that means, it feeds itself exclusively with those organic materials to be found in mud, specially with microscopical algae. The intestines are very extent, some of them measuring about 9 to 11 times body's length. Studies have been made about growth and age of the C. elegans; the biggest sizes found were of 153 mm. for females and 88 mm. for males. The C. elegans shows developed sexual glands during a long period (April to September). The movements of the spermatozoa, in contact with water is of 40 to 50 seconds of intense movements, ceasing after 70 to 100 seconds. In contact with 0.5% NaCl-solution spermatozoa show a big increase in movements-time, that can last till about 25 minutes. The eggs' diameter measures 0.70 to 0.73 mm., mature and hydrated it attains 0.93 to 1,00 mm. There is a certain correlation between the size of the body and the quantity of eggs. Big specimens can produce a total of 200.000 eggs. The average quantity contained in 1 gr. and 1 cc. is 6018 and 6229 eggs, respectively. Maturity and spawning in laboratory has been obtained due to injections of suspension of fish-hypophysis. Three or four hours after the injection, fishes show more movement and evident signs of excitation, proceeding spawning after 5 to 6 hours. Males, persecuting females, describe successive circles (merry-go-round) - carroussel), swimming side by side with females up to water's surface, where sexual products are start beating dry, for there is no blood yet. Circulation-scheme is to be found on fig. 4 and 5. The swim-bladder and the stomach are but delineated; the intestine is formed by a cylindric tube, all closed. At the place, where later on there will open the mouth, we find a group of ciliary hairs that produce a liquid current, very evident by the semi-circle formed by attached solid particles. After 36 hours, opening of the mouth and formation of the gill slits begin. At the age of 90 hours (4 mm.) the larvas swim well and start to feed themselves; the digestive tube is now all open and the swimbladder works already. During the first days of life, larvas have an adhesive organ situated at their frontal region (fig. 7) in form of a crescent, by means of which they hang to surrounding vegetation (fig. 6). When the larva begins to swim and to feed itself and its yolk are having been absorbed. the adhesive organ retracts and disappears. While larvas and alevins feed themselves with plancton, they have small eye-teeth, which disappear,. when fishes become « ilyophagus ». There exist too, during their life as larvas, pharyngeal-teeth. The lateral line appears in the larva after 16 to 18 days; more or less at the same time all fins are completely developed. Shortly after, first scales appear (20 to 23 days). Evolution of intestines twisting followed (fig. 9). Larvas show at different parts of their bodies small of organs excretory functions, that are constituted by bottons in serial disposition, every one with an excretory canal that opens towards the outside. These formations disappear suddenly when larvas attain their phase of alevin. The existence of a great number of said formations at the caudal fin (fig. 12) is of great interest. In our experiences of breeding we have employed several thousands of C. elegans larvas in different environs and we made conditions of surrounding change (illumination), depth of water, temperature, presence of sand at bottom of aquariums and without sand, food). In this way we could compare the results obtained, estimate the action of each factor for the realisation of a good bring-up of larvas.

Estudos sobrea determinação da vitamina B¹ (aneurina, tiamina) na herva mate

The infusion used as a beverage and known as tea of Paraguay or male (Ilex paraguarensis, St. Hil.) contains vitamin B (aneurin). 2) Aneurin determinations were made on the infusion commonly used (water extract) and on the complete water and alcohol extracts. The presence of aneurin was detected in both extracts. For quantitative study aneurin was adsorbed from the extracts (pH 3.8-4.0) by means of fuller's earth and kaolin. 3) Animal tests with pigeons and mice (curative, preventive and maintenance of body weight) give positive but inconstant results. No exact quantitative values could be obtained with the animal test. 4) Schopfer-Jung test based on the development of the mould « Phycomyces blakesleeanus, Bgf » showed constant results. Regular growth curves were obtained with the adsorbate of kaolin and fuller's earth. 5) The thiochrome fluorescence test introduced by Jansen was applied to the detection of aneurin in the adsorbate and good results were found which check closely with those encountered by the Schopfer-Jung test. 6) The determinations of aneurin by means of the Phycomyces and thiochrome tests gave values varying from 60 to 280 y per 100 gr. 7) Green leaves are more rich in aneurin than dry ones.

Ensaios terapeuticos com penicilina: VI - Bouba (Framboesia; pian, yaws): observações após um e dois anos de tratamento: novos casos tratados: emprêgo do veículo oleoso: associação com néo-arsfenamina

1) Depois de 2 anos de observação após o tratamento com penicilina em doses baixas, verificou-e que de 30 pacientes tratados com lesões boubáticas primo-secundárias, 13 mantinham-se curados clínica e sorològicamente. Quatro pacientes continuavam com cura clínica, mas com R. Wa. positiva. Os 13 doentes acima citados ofereceram as seguintes médias: Média das idades [...] 9 anos. Média da duração do tratamento [...] 30 dias. Média das doses totais de penicilina [...] 45.000 unidades. Média dos intervalos da injeções [...] 6/6 horas. Entretanto, doses variando de 72.000 a 200.000 unidades, em tratamento de 1 a 4 dias fracassaram. A distribuição dos 30 tratados segundo a duração do tratamento, mostra que os resultados mais favoráveis foram obtidos com os tratamento mais longos. A distribuição segundo a dose, demonstra o mesmo para aquelas compreendidas entre 21.000 e 50.000 unidades. A distribuição em grupos etários, revela o mesmo para aquele de 1 a 8 anos e finalmente a distribuição segundo a frequencia das injeções, indica o mesmo para o grupo de 8/8 a 12/12 horas. Êste último fato, justificou a abolição das aplicações noturnas. Os resultados mais favoráveis nas idades mais baixas, demonstraram, seja insuficiência das dosagens, seja u'a maior resistência ao tratamento por parte dos casos de mais longa duração. 2) Depois de 2 anos de observação após o tratamento com penicilina em doses baixas, de 6 pacientes com lesões boubáticas terciáras, 5 continuavam curados clínica e sorològicamente. O doente restante continuava com cura clínica, mas com R. Wa. positiva. Êste doente fôra superinoculado experimentalmente e não recebera tratamento em seguida, havendo probabilidade de a experiência ter concorrido para a permanência da sorologia positiva. A duração do tratamento variou de 1 mês e 27 dias a 8 meses e 22 dias e as doses totais de penicilina de 164.000 a 586.000 unidades. 3) Depois de 2 anos de observação após tratamento com néo-arsfenamina, de 4 boubáticos com lesões terciárias, apenas 2 continuavam curados clínica e sorològicamente. Os outros 2, não apresentavam sinais de doença mas continuavam com a R. Wa positiva. A duração do tratamento variou de 1 mês e 15 dias a 14 meses e a dosagem do medicamento de 2.10 grs. a 17.10 gr. 4) Depois de um ou dois anos de observação após o tratamento com penicilina isolada por via oral, 3 pacientes com lesões primo-secundárias, foram encontrados com recidiva clínica e sorológica. A duração do tratamento foi de 10 dias com a dosagem total de 100.000 unidade, os pacientes tendo 5, 8 e 10 anos respectivamente. Em quatro outros doentes, de 10 a 17 anos tratados durante 10 dias, com 150.000 unidades de penicilina associadas a citrato de sódio, os tratamentos foram considerados <>, isto é, até 20 dias depois do tratamento, não apresentaram cura clínica. Com exceção dêstes quatro últimos casos os resultados imediatos dos tratamentos já foram publicados. 5) Depois de 1 ano ou mais de observação após o tratamento, de 6 doentes de 1 a 10 anos de idade, tratados durante 10 dias com 120.000 unidades de penicilina, todos menos um se mantinham comcura clínica e sorológica. No mesmo período de observação, de 6 doentes de 14 a 25 anos de idade com lesões semelhantes e tratados com 180.000 unidades também em 10 dias, quatro se mantinham curados clínica e sorològicamente, e os outrso dois, embora com cura clínica, continuavam com R. Wa. positiva. 6) Depois de 1 ano de observação após o tratamento de lesões boubáticas terciárias, de 5 doentes que receberam 600.000 unidades de penicilina durante 20 a 60 dias, todos se mantinham com cura clínica e apenas um não apresentava cura sorológica. No mesmo período de observação, de 3 doentes com lesões semelhantes e que receberam 900.000 unidade em 60 e 105 dias, todos continuavam com cura clínica, mas um permanecia com R. Wa. positiva. Ainda no mesmo período de observação, de 2 doentes também de lesões terciárias, e que receberam 1.200.000 unidades de 3 a 5 meses, ambos continuavam com cura clínica mas apenas um permanecia com R. Wa. negativa. Uma paciente com gangoza que recebera 1.750.000 unidades em 5 meses e 10 dias continuava com cura clínica, mas com R. Wa. fortemente positiva. Êste caso foi suspeito de penicilinorresistente. 7) Depois de 2 anos de observação após o tratamento, 2 boubáticos com lesões primo-secundárias tratados com néo arsfenamina em 6 e 7 mese e com 5.45 grs. e 14.55 grs. respectivamente, mantinham-se curados clínica e sorològicamente. No mesmo período de observação, de 3 doentes com lesões terciárias tratados com néo-arsfenamina e que receberam de 4.80 grs. a 29.15 grs. em 2 a 14 meses de tratamento, 2 se mantinham curados clínica e sorològicamente, e o restante teve recidiva, sendo tratado em seguida com penicilina. O caso que recebeu 20.15 grs. de néo-arfenamina em 14 meses de tratamento foi particularmente rebelde à terapêutica. 8) Experiências com penicilina dissolvida em óleo de amendoim mais cêra de ablha deram os seguintes resultados: a) Uma única injeção de 100.000 unidade em 6 pacientes de 8 a 11 anos foi completamente falha. b) Uma única injeção de 200.0000 unidades em 6 pacientes de 12 a 15 anos também falhou. c) Duas injeções de 100.000 unidades cada uma, em 2 dias em pacientes de 16 a 21 anos, deram cura clínica provável a apenas 2 doentes de 6 tratados. d) Três injeções de 100.000 unidades cada uma, em 3 dias, em pacientes de 8 a 11 anos, deram cura clínica a 3 doentes de 6 tratados. e) Todos êsses doentes referidos como curados clinicamente, permaneciam com sorologia positiva. 8) Experiências realizadas empregando a penicilina associada à néo-arsfenamina em 6 dias de tratamento deram os seguintes resultados, após 6 meses de observação. A) Três doentes com secundarismo boubático, de 10 a 13 anos de idade tratados com 100.000 unidades amis 0,30 gr., mantinham-se curados clínica e sorològicamente;.b) de três doentes de 15 a 19 anos também com secundarismo,tratados...

Anfíbios Anuros do Distrito Federal

The frogs of the Federal District of Brazil are listed and discussed as to habit, biology and ecology. The F. D is situated 22° 54' 24" S. & 43° 10' 21" W Gr. and comprises 1.356 km². Its topography includes sea-shore, maritime scrub, lagoons, plains and marsh, open slopes, forested mountains and great heads of rock. Three thousand feet of altitude are attained at two points. Fifty two different frogs occur in the F.D. Three fifths of them live in open country. Two fifths of these have never been found above the plains; the others range higher but mostly in open country. Their environment offers conditions suitable for average tadpoles and adults. these frogs are more or less unspecialized. There are six genera and thirty species. Two thirds of the latter belong to the type genera of the large neotropical families Bufonidae, Leptodactylidae and Hylidae. Only in the maritime scrub formation are conditions somewhat different. Water for average tadpoles is provided by the lagoons. The xerophytism of the vegetation is, however, so marked that bromeliads growing on the ground provide almost the only appropriate shelter for adult tree-frogs used to sleeping upright on the vegetation. One large Hylid genus lives entirely in them. It is casque-headed and phragmotic, shutting the lumen of the leaf-cup with head used as a plug. Another large Hylid genus shows a lesser degree of the same specialization. (Lutz A & Lutz B, 1939 II). One genus with two species is entirely saxicolous; it lives on wet ledges of rock at all phases of its life history. (B. Lutz 1948). The other two fifths of the frogs from F. D. are montane forest forms. Their environment offers numerous and varied biotopes and is near optimum for adults. There is,however, hardly any standing water available for larvae. These frogs are ecologically diversified. They also show a general trend towards spawning in the adult biotipe, which leads to delayed hatching, semi-aquatic and terrestrial larvae and direct development. (B Lutz, 1948). The author interprets the morphological specialization of the casque-headed Hylids and the biological specialization of the montane forest forms as adaptive. Casque-headedness and phragmosis increase protection against blood-suckers and predators. The humidity of the rain forest permits eggs, embryos and larvae to develop, unharmed, outside their usual, aquatic, environment.

An atlas of human gene expression from massively parallel signature sequencing (MPSS).

We have used massively parallel signature sequencing (MPSS) to sample the transcriptomes of 32 normal human tissues to an unprecedented depth, thus documenting the patterns of expression of almost 20,000 genes with high sensitivity and specificity. The data confirm the widely held belief that differences in gene expression between cell and tissue types are largely determined by transcripts derived from a limited number of tissue-specific genes, rather than by combinations of more promiscuously expressed genes. Expression of a little more than half of all known human genes seems to account for both the common requirements and the specific functions of the tissues sampled. A classification of tissues based on patterns of gene expression largely reproduces classifications based on anatomical and biochemical properties. The unbiased sampling of the human transcriptome achieved by MPSS supports the idea that most human genes have been mapped, if not functionally characterized. This data set should prove useful for the identification of tissue-specific genes, for the study of global changes induced by pathological conditions, and for the definition of a minimal set of genes necessary for basic cell maintenance. The data are available on the Web at http://mpss.licr.org and http://sgb.lynxgen.com.

On the applicability of mathematics : philosophical and historical perspectives

The present thesis is a contribution to the debate on the applicability of mathematics; it examines the interplay between mathematics and the world, using historical case studies. The first part of the thesis consists of four small case studies. In chapter 1, I criticize "ante rem structuralism", proposed by Stewart Shapiro, by showing that his so-called "finite cardinal structures" are in conflict with mathematical practice. In chapter 2, I discuss Leonhard Euler's solution to the Königsberg bridges problem. I propose interpreting Euler's solution both as an explanation within mathematics and as a scientific explanation. I put the insights from the historical case to work against recent philosophical accounts of the Königsberg case. In chapter 3, I analyze the predator-prey model, proposed by Lotka and Volterra. I extract some interesting philosophical lessons from Volterra's original account of the model, such as: Volterra's remarks on mathematical methodology; the relation between mathematics and idealization in the construction of the model; some relevant details in the derivation of the Third Law, and; notions of intervention that are motivated by one of Volterra's main mathematical tools, phase spaces. In chapter 4, I discuss scientific and mathematical attempts to explain the structure of the bee's honeycomb. In the first part, I discuss a candidate explanation, based on the mathematical Honeycomb Conjecture, presented in Lyon and Colyvan (2008). I argue that this explanation is not scientifically adequate. In the second part, I discuss other mathematical, physical and biological studies that could contribute to an explanation of the bee's honeycomb. The upshot is that most of the relevant mathematics is not yet sufficiently understood, and there is also an ongoing debate as to the biological details of the construction of the bee's honeycomb. The second part of the thesis is a bigger case study from physics: the genesis of GR. Chapter 5 is a short introduction to the history, physics and mathematics that is relevant to the genesis of general relativity (GR). Chapter 6 discusses the historical question as to what Marcel Grossmann contributed to the genesis of GR. I will examine the so-called "Entwurf" paper, an important joint publication by Einstein and Grossmann, containing the first tensorial formulation of GR. By comparing Grossmann's part with the mathematical theories he used, we can gain a better understanding of what is involved in the first steps of assimilating a mathematical theory to a physical question. In chapter 7, I introduce, and discuss, a recent account of the applicability of mathematics to the world, the Inferential Conception (IC), proposed by Bueno and Colyvan (2011). I give a short exposition of the IC, offer some critical remarks on the account, discuss potential philosophical objections, and I propose some extensions of the IC. In chapter 8, I put the Inferential Conception (IC) to work in the historical case study: the genesis of GR. I analyze three historical episodes, using the conceptual apparatus provided by the IC. In episode one, I investigate how the starting point of the application process, the "assumed structure", is chosen. Then I analyze two small application cycles that led to revisions of the initial assumed structure. In episode two, I examine how the application of "new" mathematics - the application of the Absolute Differential Calculus (ADC) to gravitational theory - meshes with the IC. In episode three, I take a closer look at two of Einstein's failed attempts to find a suitable differential operator for the field equations, and apply the conceptual tools provided by the IC so as to better understand why he erroneously rejected both the Ricci tensor and the November tensor in the Zurich Notebook.

Association of N-acetylaspartate and cerebrospinal fluid Aβ42 in dementia.

The interplay of amyloid and mitochondrial function is considered crucial in the pathophysiology of Alzheimer's disease (AD). We tested the association of the putative marker of mitochondrial function N-acetylaspartate (NAA) as measured by proton magnetic resonance spectroscopy within the medial temporal lobe and cerebrospinal fluid amyoid-β42 (Aβ42), total Tau and pTau181. 109 patients were recruited in a multicenter study (40 mild AD patients, 14 non-AD dementia patients, 29 mild cognitive impairment (MCI) AD-type patients, 26 MCI of non-AD type patients). NAA correlated with Aβ42 within the AD group. Since the NAA concentration is coupled to neuronal mitochondrial function, the correlation between NAA and Aβ42 may reflect the interaction between disrupted mitochondrial pathways and amyloid production.

Shots de fruits et légumes : avantages et inconvénients [Fruit and vegetable beverages: advantages and disadvantages]

En Suisse, les recommandations de fruits et légumes sont de 600 g par jour. En réalité, la consommation moyenne se situe à 60% des recommandations, c'est-à-dire à 380 g par jour. L'utilisation de produits tels que des shots de fruits et légumes pourrait réduire l'écart en facilitant la consommation de ces aliments. Cependant, ils ne peuvent pas remplacer à cent pour cent les aliments frais car leurs teneurs en fibres et vitamines C sont plus faibles, et ils interfèrent avec la physiologie de la prise alimentaire (satiété). Ces produits peuvent donc faire partie d'une alimentation variée en prenant la place d'une portion de fruits et légumes. Un autre aspect non négligeable en est le coût puisque si l'on consommait ces produits sur une semaine à la place d'aliments frais la différence serait d'environ CHF 30.- de plus. In Switzerland, fruits and vegetables recommendations are of 600 gr per day. In reality, the average intake is about 60% of these recommendations, it means 380 gr per day. The use of products like fruits and vegetables shots could reduce the gap by making drinking easier. However, they cannot replace one hundred percent fresh food for their content in fibers and vitamin C are lower and they interfere with the physiology of the food intake (satiety). These products can have their importance in a various supply by taking the place of one fruit or vegetable portion. Another non negligible aspect is the price as if we consume these products over one week instead of fresh food, the difference would be of about CHF 30.- more

Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes.

A stringent branch-site codon model was used to detect positive selection in vertebrate evolution. We show that the test is robust to the large evolutionary distances involved. Positive selection was detected in 77% of 884 genes studied. Most positive selection concerns a few sites on a single branch of the phylogenetic tree: Between 0.9% and 4.7% of sites are affected by positive selection depending on the branches. No functional category was overrepresented among genes under positive selection. Surprisingly, whole genome duplication had no effect on the prevalence of positive selection, whether the fish-specific genome duplication or the two rounds at the origin of vertebrates. Thus positive selection has not been limited to a few gene classes, or to specific evolutionary events such as duplication, but has been pervasive during vertebrate evolution.

Structured RNAs in the ENCODE selected regions of the human genome.

Functional RNA structures play an important role both in the context of noncoding RNA transcripts as well as regulatory elements in mRNAs. Here we present a computational study to detect functional RNA structures within the ENCODE regions of the human genome. Since structural RNAs in general lack characteristic signals in primary sequence, comparative approaches evaluating evolutionary conservation of structures are most promising. We have used three recently introduced programs based on either phylogenetic-stochastic context-free grammar (EvoFold) or energy directed folding (RNAz and AlifoldZ), yielding several thousand candidate structures (corresponding to approximately 2.7% of the ENCODE regions). EvoFold has its highest sensitivity in highly conserved and relatively AU-rich regions, while RNAz favors slightly GC-rich regions, resulting in a relatively small overlap between methods. Comparison with the GENCODE annotation points to functional RNAs in all genomic contexts, with a slightly increased density in 3'-UTRs. While we estimate a significant false discovery rate of approximately 50%-70% many of the predictions can be further substantiated by additional criteria: 248 loci are predicted by both RNAz and EvoFold, and an additional 239 RNAz or EvoFold predictions are supported by the (more stringent) AlifoldZ algorithm. Five hundred seventy RNAz structure predictions fall into regions that show signs of selection pressure also on the sequence level (i.e., conserved elements). More than 700 predictions overlap with noncoding transcripts detected by oligonucleotide tiling arrays. One hundred seventy-five selected candidates were tested by RT-PCR in six tissues, and expression could be verified in 43 cases (24.6%).

Gene duplication and neofunctionalization: POLR3G and POLR3GL.

RNA polymerase III (Pol III) occurs in two versions, one containing the POLR3G subunit and the other the closely related POLR3GL subunit. It is not clear whether these two Pol III forms have the same function, in particular whether they recognize the same target genes. We show that the POLR3G and POLR3GL genes arose from a DNA-based gene duplication, probably in a common ancestor of vertebrates. POLR3G- as well as POLR3GL-containing Pol III are present in cultured cell lines and in normal mouse liver, although the relative amounts of the two forms vary, with the POLR3G-containing Pol III relatively more abundant in dividing cells. Genome-wide chromatin immunoprecipitations followed by high-throughput sequencing (ChIP-seq) reveal that both forms of Pol III occupy the same target genes, in very constant proportions within one cell line, suggesting that the two forms of Pol III have a similar function with regard to specificity for target genes. In contrast, the POLR3G promoter-not the POLR3GL promoter-binds the transcription factor MYC, as do all other promoters of genes encoding Pol III subunits. Thus, the POLR3G/POLR3GL duplication did not lead to neo-functionalization of the gene product (at least with regard to target gene specificity) but rather to neo-functionalization of the transcription units, which acquired different mechanisms of regulation, thus likely affording greater regulation potential to the cell.