Late presentation for HIV care across Europe: update from the Collaboration of Observational HIV Epidemiological Research Europe (COHERE) study, 2010 to 2013.

Late presentation (LP) for HIV care across Europe remains a significant issue. We provide a cross-European update from 34 countries on the prevalence and risk factors of LP for 2010-2013. People aged ≥ 16 presenting for HIV care (earliest of HIV-diagnosis, first clinic visit or cohort enrollment) after 1 January 2010 with available CD4 count within six months of presentation were included. LP was defined as presentation with a CD4 count < 350/mm(3) or an AIDS defining event (at any CD4), in the six months following HIV diagnosis. Logistic regression investigated changes in LP over time. A total of 30,454 people were included. The median CD4 count at presentation was 368/mm(3) (interquartile range (IQR) 193-555/mm(3)), with no change over time (p = 0.70). In 2010, 4,775/10,766 (47.5%) were LP whereas in 2013, 1,642/3,375 (48.7%) were LP (p = 0.63). LP was most common in central Europe (4,791/9,625, 49.8%), followed by northern (5,704/11,692; 48.8%), southern (3,550/7,760; 45.8%) and eastern Europe (541/1,377; 38.3%; p < 0.0001). There was a significant increase in LP in male and female people who inject drugs (PWID) (adjusted odds ratio (aOR)/year later 1.16; 95% confidence interval (CI): 1.02-1.32), and a significant decline in LP in northern Europe (aOR/year later 0.89; 95% CI: 0.85-0.94). Further improvements in effective HIV testing strategies, with a focus on vulnerable groups, are required across the European continent.

Global raster maps indicating the habitat suitability for 7 suborders of cold water octocorals (Octocorallia found deeper than 50m)

This dataset consists of global raster maps indicating the habitat suitability for 7 suborders of cold water octocorals (Octocorallia found deeper than 50m). Maps present a relative habitat suitability index ranging from 0 (unsuitable) to 100 (highly suitable). Two maps are provided for each suborder (Alcyoniina, Calcaxonia, Holaxonia, Scleraxonia, Sessiliflorae, Stolonifera, and Subselliflorae). A publicly accessable low resolution map (grid size 10x10 arc-minutes) and a restricted access high resolution map (grid size 30x30 arc-seconds). Maps are geotiff format incorporating LZW compression to reduce file size. Please contact the corresponding author (Chris Yesson) for access to the high resolution data.

Raster maps for 29 environmental variables in three geographical regions

Aim: Greater understanding of the processes underlying biological invasions is required to determine and predict invasion risk. Two subspecies of olive (Olea europaea subsp. europaea and Olea europaea subsp. cuspidata) have been introduced into Australia from the Mediterranean Basin and southern Africa during the 19th century. Our aim was to determine to what extent the native environmental niches of these two olive subspecies explain the current spatial segregation of the subspecies in their non-native range. We also assessed whether niche shifts had occurred in the non-native range, and examined whether invasion was associated with increased or decreased occupancy of niche space in the non-native range relative to the native range. Location: South-eastern Australia, Mediterranean Basin and southern Africa. Methods: Ecological niche models (ENMs) were used to quantify the similarity of native and non-native realized niches. Niche shifts were characterized by the relative contribution of niche expansion, stability and contraction based on the relative occupancy of environmental space by the native and non-native populations. Results: Native ENMs indicated that the spatial segregation of the two subspecies in their non-native range was partly determined by differences in their native niches. However, we found that environmentally suitable niches were less occupied in the non-native range relative to the native range, indicating that niche shifts had occurred through a contraction of the native niches after invasion, for both subspecies. Main conclusions: The mapping of environmental factors associated with niche expansion, stability or contraction allowed us to identify areas of greater invasion risk. This study provides an example of successful invasions that are associated with niche shifts, illustrating that introduced plant species are sometimes readily able to establish in novel environments. In these situations the assumption of niche stasis during invasion, which is implicitly assumed by ENMs, may be unreasonable.

Radiolarian events in the eastern Equatorial Pacific

The development of an orbitally tuned time scale for the ODP leg 138 sites provides biostratigraphers a very high resolution chronostratigraphic framework. With this framework we are better able to define which of the first and last appearances of species appear to be synchronous. In addition, the geographic distribution of sites provides the means with which the detailed spatial patterns of invasion of new species and the extinction of older species can be mapped. These maps not only provide information on the process of evolution, migration, and extinction, they can also be related to water mass distributions and near-surface circulation of the ocean. Of 39 radiolarian events studied at 11 sites in the eastern equatorial Pacific, 28 were found to have a minimum range in their estimated age that exceeded 0.15 m.y. The temporal pattern of first and last appearances of these diachronous events have coherent spatial patterns that indicate shifts in the areas of high oceanographic gradients over the past 10 Ma. These changes in the locations of high gradient regions suggest that the South Equatorial Current (SEC) was north of its present position prior to approximately 7 Ma. There was a southward shift in the northern boundary of this current between approximately 6 and 7 Ma, and the development of a relatively strong gradient between the northeastern and northwestern sites. Between approximately 3.7 and 3.4 Ma, there was a very slight northward shift in the northern boundary of the SEC and the steep gradients between the northeastern and northwestern sites may have disappeared. This change is thought to be associated with the closing of the Isthmus of Panama. The temporal-spatial patterns of diachronous events younger than 3.4 Ma are consistent with patterns of circulation in the modern ocean.

Radio-echo sounding investigation of the western Dronning Maud Land and north-eastern Coats Land, East Antarctica (Scale 1:2 500 000)

During two Antarctic field seasons, western Dronning Maud Land and eastern Coats Land were covered by airborne radio-echo sounding surveys, conducted in combination with magnetic and gravity measurements along the 50 NW-SE-directed tracks, totaling about 11200 km and spaced 20 km apart. The data were collected in analogue form and then processed to compile ice surface, ice thickness and bedrock topography maps in I : 2 500 000 scale which gave a new and/or more detailed information on the region than previous compilations. The maps show that western Dronning Maud Land is dominated by a large mountainous area with altitudes up to 2800 m including rock outcrops of Annandagstoppane, Borgmassivet, Kirwanveggen and Heimefrontfjella. Upland terrains of Vestfjella and Mannefallknausane have an isolated position and are surrounded by a plain with bedrock depressions of 600 m deep below sea level. A narrow strip of north-eastern Coats Land studied by radio-echo soundings exhibits a smooth subice relief with altitudes close to sea level. The structural style of bedrock topography was mostly determined by extensional tectonics.

Maps of Waxeggkees glacier 1950-2000

Photogrammetric surveys have been made and maps drawn of a number of glaciers in the eastern Alps, among them the Waxeggkees in the Zillertal Alps of Tyrol, at approximately ten-year intervals since 1950. Terrestrial photogrammetry was used for the pictures taken in 1950, 1960, 1980, 1989 and 2000, while aerial photogrammetry was employed for the 1969 photo. These maps were subsequently used to calculate the changes in area, elevation and volume for elevational zones of 50 m. The numeric values are given in two tables. The illustration of surface changes in Waxeggkees is continued cartographically on 5 map sheets at the scale of 1 : 15.000 and a vertical interval of the contour lines of 50 m. Changes in glacier area are marked in light red to indicate a decrease in area, and in light blue for an increase. Changes in elevation can only be indicated indirectly, namely in the form of vertical interval bands, referring to the surface areas that arise due to the relocation of the contour lines, resulting from an elevational change. Decrease in elevation is indicated in red, increase in blue, on 100 m contour lines.

Deforesting Europe: pollen-inferred Holocene land cover change using the 'pseudobiomization' approach

Maps of continental-scale land cover are utilized by a range of diverse users but whilst a range of products exist that describe present and recent land cover in Europe, there are currently no datasets that describe past variations over long time-scales. User groups with an interest in past land cover include the climate modelling community, socio-ecological historians and earth system scientists. Europe is one of the continents with the longest histories of land conversion from forest to farmland, thus understanding land cover change in this area is globally significant. This study applies the pseudobiomization method (PBM) to 982 pollen records from across Europe, taken from the European Pollen Database (EPD) to produce a first synthesis of pan-European land cover change for the period 9000 BP to present, in contiguous 200 year time intervals. The PBM transforms pollen proportions from each site to one of eight land cover classes (LCCs) that are directly comparable to the CORINE land cover classification. The proportion of LCCs represented in each time window provides a spatially aggregated record of land cover change for temperate and northern Europe, and for a series of case study regions (western France, the western Alps, and the Czech Republic and Slovakia). At the European scale, the impact of Neolithic food producing economies appear to be detectable from 6000 BP through reduction in broad-leaf forests resulting from human land use activities such as forest clearance. Total forest cover at a pan-European scale moved outside the range of previous background variability from 4000 BP onwards. From 2200 BP land cover change intensified, and the broad pattern of land cover for preindustrial Europe was established by 1000 BP. Recognizing the timing of anthropogenic land cover change in Europe will further the understanding of land cover-climate interactions, and the origins of the modern cultural landscape.

Planktic foraminifer-based sea-surface temperature reconstruction for sediment cores JM97-948/2A and MD95-2011 from the Vøring Plateau, eastern Norwegian Sea

The early to mid-Holocene thermal optimum is a well-known feature in a wide variety of paleoclimate archives from the Northern Hemisphere. Reconstructed summer temperature anomalies from across northern Europe show a clear maximum around 6000 years before present (6 ka). For the marine realm, Holocene trends in sea-surface temperature reconstructions for the North Atlantic and Norwegian Sea do not exhibit a consistent pattern of early to mid- Holocene warmth. Sea-surface temperature records based on alkenones and diatoms generally show the existence of a warm early to mid-Holocene optimum. In contrast, several foraminifer and radiolarian based temperature records from the North Atlantic and Norwegian Sea show a cool mid- Holocene anomaly and a trend towards warmer temperatures in the late Holocene. In this paper, we revisit the foraminifer record from the Vøring Plateau in the Norwegian Sea. We also compare this record with published foraminifer based temperature reconstructions from the North Atlantic and with modelled (CCSM3) upper ocean temperatures. Model results indicate that while the seasonal summer warming of the seasurface was stronger during the mid-Holocene, sub-surface depths experienced a cooling. This hydrographic setting can explain the discrepancies between the Holocene trends exhibited by phytoplankton and zooplankton based temperature proxy records.

Multi-temporal mapping of seagrass cover, species and biomass of the Eastern Banks, Moreton Bay, Australia, with links to shapefiles

The spatial and temporal dynamics of seagrasses have been studied from the leaf to patch (100 m**2) scales. However, landscape scale (> 100 km**2) seagrass population dynamics are unresolved in seagrass ecology. Previous remote sensing approaches have lacked the temporal or spatial resolution, or ecologically appropriate mapping, to fully address this issue. This paper presents a robust, semi-automated object-based image analysis approach for mapping dominant seagrass species, percentage cover and above ground biomass using a time series of field data and coincident high spatial resolution satellite imagery. The study area was a 142 km**2 shallow, clear water seagrass habitat (the Eastern Banks, Moreton Bay, Australia). Nine data sets acquired between 2004 and 2013 were used to create seagrass species and percentage cover maps through the integration of seagrass photo transect field data, and atmospherically and geometrically corrected high spatial resolution satellite image data (WorldView-2, IKONOS and Quickbird-2) using an object based image analysis approach. Biomass maps were derived using empirical models trained with in-situ above ground biomass data per seagrass species. Maps and summary plots identified inter- and intra-annual variation of seagrass species composition, percentage cover level and above ground biomass. The methods provide a rigorous approach for field and image data collection and pre-processing, a semi-automated approach to extract seagrass species and cover maps and assess accuracy, and the subsequent empirical modelling of seagrass biomass. The resultant maps provide a fundamental data set for understanding landscape scale seagrass dynamics in a shallow water environment. Our findings provide proof of concept for the use of time-series analysis of remotely sensed seagrass products for use in seagrass ecology and management.

Gridded climate data from 5 Global Climate Models (GCM) of the Last Glacial Maximum (LGM) downscaled to 30 arc seconds for Europe, with links to NetCDF files

Studies on the impact of historical, current and future global change require very high-resolution climate data (less or equal 1km) as a basis for modelled responses, meaning that data from digital climate models generally require substantial rescaling. Another shortcoming of available datasets on past climate is that the effects of sea level rise and fall are not considered. Without such information, the study of glacial refugia or early Holocene plant and animal migration are incomplete if not impossible. Sea level at the last glacial maximum (LGM) was approximately 125m lower, creating substantial additional terrestrial area for which no current baseline data exist. Here, we introduce the development of a novel, gridded climate dataset for LGM that is both very high resolution (1km) and extends to the LGM sea and land mask. We developed two methods to extend current terrestrial precipitation and temperature data to areas between the current and LGM coastlines. The absolute interpolation error is less than 1°C and 0.5 °C for 98.9% and 87.8% of all pixels for the first two 1 arc degree distance zones. We use the change factor method with these newly assembled baseline data to downscale five global circulation models of LGM climate to a resolution of 1km for Europe. As additional variables we calculate 19 'bioclimatic' variables, which are often used in climate change impact studies on biological diversity. The new LGM climate maps are well suited for analysing refugia and migration during Holocene warming following the LGM.

Forest disturbance map for the Carpathian ecoregion, 1984-2012

Detailed knowledge of forest cover dynamics is crucial for many applications from resource management to ecosystem service assessments. Landsat data provides the necessary spatial, temporal and spectral detail to map and analyze forest cover and forest change processes. With the opening of the Landsat archive, new opportunities arise to monitor forest dynamics on regional to continental scales. In this study we analyzed changes in forest types, forest disturbances, and forest recovery for the Carpathian ecoregion in Eastern Europe. We generated a series of image composites at five year intervals between 1985 and 2010 and utilized a hybrid analysis strategy consisting of radiometric change classification, post-classification comparison and continuous index- and segment-based post-disturbance recovery assessment. For validation of the disturbance map we used a point-based accuracy assessment, and assessed the accuracy of our forest type maps using forest inventory data and statistically sampled ground truth data for 2010. Our Carpathian-wide disturbance map achieved an overall accuracy of 86% and the forest type maps up to 73% accuracy. While our results suggested a small net forest increase in the Carpathians, almost 20% of the forests experienced stand-replacing disturbances over the past 25 years. Forest recovery seemed to only partly counterbalance the widespread natural disturbances and clear-cutting activities. Disturbances were most widespread during the late 1980s and early 1990s, but some areas also exhibited extensive forest disturbances after 2000, especially in the Polish, Czech and Romanian Carpathians. Considerable shifts in forest composition occurred in the Carpathians, with disturbances increasingly affecting coniferous forests, and a relative decrease in coniferous and mixed forests. Both aspects are likely connected to an increased vulnerability of spruce plantations to pests and pathogens in the Carpathians. Overall, our results exemplify the highly dynamic nature of forest cover during times of socio-economic and institutional change, and highlight the value of the Landsat archive for monitoring these dynamics.

Benthic and substrate cover data derived from a time series of photo-transect surveys for the Eastern Banks, Moreton Bay Australia, 2004-2015

This paper describes seagrass species and percentage cover point-based field data sets derived from georeferenced photo transects. Annually or biannually over a ten year period (2004-2015) data sets were collected using 30-50 transects, 500-800 m in length distributed across a 142 km**2 shallow, clear water seagrass habitat, the Eastern Banks, Moreton Bay, Australia. Each of the eight data sets include seagrass property information derived from approximately 3000 georeferenced, downward looking photographs captured at 2-4 m intervals along the transects. Photographs were manually interpreted to estimate seagrass species composition and percentage cover (Coral Point Count excel; CPCe). Understanding seagrass biology, ecology and dynamics for scientific and management purposes requires point-based data on species composition and cover. This data set, and the methods used to derive it are a globally unique example for seagrass ecological applications. It provides the basis for multiple further studies at this site, regional to global comparative studies, and, for the design of similar monitoring programs elsewhere.

Mapping the visual landscape quality in Europe using physical attributes

he inclusion of environmental care data in the decision-making process should be based on the results obtained after scienti?cally evaluating different environmental variables. Herein, a European landscape geographic model is presented. This landscape map would allow the environmental care variable ?visual landscape?, along with other information related to vegetation, geology, soils, cultural variables, etc., to be integrated into the planning process. The methodology used is not new since it has already been tested in Spain by the authors. Nevertheless, the model was adapted to cope with the much more extensive territory of the European Union. This meant dealing with computational dif?culties, and a lack of information. The result of this work is a raster map (100 m cell size) that evaluates landscape quality in Europe by dividing the area into seven visual quality classes. This is a practical tool for territorial development that will facilitate the environmental assessment of plans, such as infrastructure plans, within a strategic pan-European framework.

COST Action Urban Agriculture Europe Training School «Urban agriculture inside the city:alternatives for vacant lots and public space»

The third Training School of the Action took place in Vitoria-Gasteiz (Basque country, Spain) from 24th to 26th September 2014. Vitoria-Gateiz has experimented an important urban outgrowth in the last decade, mainly through the planning and development of two new neighborhoods, Zabalgana and Salburúa, situated at the eastern and western border of the city, by the Greenbelt. These new development are well-equipped and designed according to sustainability principles. Nevertheless, among the main problems they present is their over-dimensioned public space, which creates some areas lacking enough density and mix of uses. On the other hand it is very expensive for the municipality to maintain these public space with the high Vitorian urban standards for public space. The proposed solution for this problem is a strategy of "re-densification" through the insertion of new uses The debate has arisen about which are the most adequate uses to insert in order to get an increasing of urban vitality, specially considering that housing has reached its peak and that Vitoria-Gasteiz is well served with social and sport amenities. The main goal of the TS was to offer an opportunity for the reflection about how urban agriculture might be an optimal alternative for the re-qualifying of this over-dimensioned public space in the new neighbourhoods, especially considering it synergic potential as a tool for production, leisure and landscaping, including the possibility of energy crops within the limits of urban space. Continuity with rural and natural surrounding area through alternatives for urban fringe at the small scale is a relevant issue to be considered as well within the reflection. Taking Zabalgana neighbourhood as a practical field for experiment, the Training School is conceived as a practical and intensive design charrette to be held during a whole day after two days of local knowledge-deepening through field visits and presentations.