Synthesis of unusual alpha-amino acids and study of the effect of their incorporation into antimicrobial peptides. Total synthesis of biactive marine natural products and analogues thereof

The principle theme of this thesis was the synthesis of bioactive compounds. To this end, this work was focus on two main projects. The first one, which was carried out in the Department of Chemistry of the University of Girona under the supervision of Dr Montserrat Heras, concerned the synthesis of new unnatural amino acids bearing a pyrimidine ring within their side chain for incorporation into the antimicrobial peptide BP100 following a rational design in order to improve its biological profile. On the other hand, the second chapter of this thesis was developed in collaboration with the Laboratoire de Chimie Organique (ESPCI-ParisTech, Paris, France) under the guidance of Pr Janine Cossy and Dr Arseniyadis. This chapter was centered on the total synthesis of three marine natural products with complex structures and interesting biological activities: acremolide B, (–) bitungolide F and lyngbouilloside.

Synthesis and NMR spectroscopic analysis of 3-nitro-pyranoside, 3-nitro-septanoside and 4-nitro-septanoside derivatives by condensation of the anion of nitromethane with glycoside

The utility of the nitroaldol reaction for accessing 3-nitro-pyranoside, 3-nitro-septanoside or 4-nitro-septanoside derivatives, by reaction of the anion of nitromethane with glycoside dialdehydes is demonstrated. Initially, the feasibility of using unprotected glucoside dialdehydes was probed for the synthesis of the septanoside products, but this affoided pyranoside rather than septanoside targets. Subsequent studies utilised protected glycoside dialdehydes within the methodology, which allowed entry into a range of 3-nitro or 4-nitro-septanosides in good yield NMR spectroscopic analysis allowed determination of the stereochemistry of each of the products thus afforded.

Molecular structures of 3-hydroxybenzoic acid and 4-hydroxybenzoic acid, obtained by gas-phase electron diffraction and theoretical calculations

The structures of 3-hydroxybenzoic acid and 4-hydroxybenzoic acid have been determined by gas-phase electron diffraction using results from quantum chemical calculations to inform the choice of restraints applied to some of the structural parameters. The results from the study presented here demonstrate that resonance hybrids are not as helpful in rationalizing the structures of 2-, 3-, and 4-hydroxybenzoic acids as are models based upon electrostatic effects.

Aldol reaction of butane-2,3-diacetal protected methyl glycerate

The addition of aldehydes to butane-2,3-diacetal has been investigated. The reaction was shown to be both regioselective and diastereoselective by 1H NMR spectroscopy. The configuration of the newly formed stereocenter was determined by Mosher’s ester analysis.

Preparation of transition metal complexes of bicyclo[2.2.1]hept-5-ene-2-carboxylic acid (C7H9CO2H) and X-ray crystal structure of [Cu2?(±)-endo-μ-O2CC7H9?4 (CH3OH)2]·2CH3OH

Metathesis reactions were used to prepare a range of dicopper(II), monocopper(I), diruthenium(II, III), dimolybdenum(II,II) and dirhodium(II,II) complexes of either racemic or resolved forms of endo- and exo-bicyclo[2.2.1]hept-5-ene-2-carboxylic acid (C7H9CO2H). The X-ray crystal structure of [Cu2{(±)-endo-μ-O2CC7H9}4(CH3OH)2]·2CH3OH shows the two copper(II) ions bridged by two (+)-endo-bicyclo[2.2.1]hept-5-ene-2-carboxylate anions and two (−)-endo-bicyclo[2.2.1]hept-5-ene-2-carboxylate anions. Methanol molecules occupy the two trans axial sites, and there are also two methanol molecules hydrogen bonded to opposite carboxyl oxygens.

Detection of Oxidation Products of 5-Methyl-2′-Deoxycytidine in Arabidopsis DNA

Epigenetic regulations play important roles in plant development and adaptation to environmental stress. Recent studies from mammalian systems have demonstrated the involvement of ten-eleven translocation (Tet) family of dioxygenases in the generation of a series of oxidized derivatives of 5-methylcytosine (5-mC) in mammalian DNA. In addition, these oxidized 5-mC nucleobases have important roles in epigenetic remodeling and aberrant levels of 5-hydroxymethyl-29-deoxycytidine (5-HmdC) were found to be associated with different types of human cancers. However, there is a lack of evidence supporting the presence of these modified bases in plant DNA. Here we reported the use of a reversed-phase HPLC coupled with tandem mass spectrometry method and stable isotope-labeled standards for assessing the levels of the oxidized 5-mC nucleosides along with two other oxidatively induced DNA modifications in genomic DNA of Arabidopsis. These included 5- HmdC, 5-formyl-29-deoxycytidine (5-FodC), 5-carboxyl-29-deoxycytidine (5-CadC), 5-hydroxymethyl-29-deoxyuridine (5- HmdU), and the (59S) diastereomer of 8,59-cyclo-29-deoxyguanosine (S-cdG). We found that, in Arabidopsis DNA, the levels of 5-HmdC, 5-FodC, and 5-CadC are approximately 0.8 modifications per 106 nucleosides, with the frequency of 5-HmdC (per 5-mdC) being comparable to that of 5-HmdU (per thymidine). The relatively low levels of the 5-mdC oxidation products suggest that they arise likely from reactive oxygen species present in cells, which is in line with the lack of homologous Tetfamily dioxygenase enzymes in Arabidopsis.

Synthesis, molecular structure and physicochemical properties of bis(3 `-azido-3 `-deoxythymidin-5 `-yl) carbonate

3`-Azido-3`-deoxythymidine (zidovudine, AZT), a synthetic analog of natural nucleoside thymidine, has been used extensively in AIDS treatments. We report here the synthesis. X-ray crystal and molecular structure, NMR, IR and Raman spectra and the thermal behavior of a novel carbonate of AZT [(AZT-O)(2)C=O], prepared by the reaction of zidovudine with carbonyldiimidazole. The carbonate compound, C(21)H(24)N(10)O(9), crystallizes in the tetragonal space group P4(1)2(1)2 with a = b = 15.284(1), c = 21.695(1) angstrom, and Z = 8 molecules per unit cell. It consists of two AZT moieties of closely related conformations which are bridged by a carbonyl group to adopt a folded Z-like shape. (C) 2010 Elsevier B.V. All rights reserved.

December 2009, Volume 5, Number 4

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Controle de Botryosphaeria ribis causador de seca de ponteiro em Corymbia citriodora, com extratos vegetais e fungicidas

A seca de ponteiros é uma doença que vem acarretando danos severos em plantas de eucalipto, causando cancros ao longo do ramo principal. O objetivo deste trabalho foi avaliar o efeito de fungicidas e extratos vegetais no controle de Botryosphaeria ribis. O teste in vitro dos fungicidas foi inteiramente casualizado com oito tratamentos: carbendazim, clorotalonil, difenoconazole, picoxystrobin + ciproconazole, ciproconazole, azoxystrobin, picoxystrobin e testemunha, quatro doses: 1 µg/mL, 10 µg/mL, 100 µg/mL e 1000 µg/mL; com cinco repetições. Após homogeneização do meio foram vertidas para as placas, repicado um disco de meio de cultura contendo o patógeno para estas placas e mantidas em BOD a 25°C por cinco dias. A avaliação foi feita através de medição diária do crescimento radial do micélio em centímetros. O delineamento experimental do controle químico a campo foi em fatorial 5x3, com cinco fungicidas e três métodos de aplicação (poda, pincelado e pulverizado), com quatro repetições. Foram feitas quatro aplicações, com intervalo de quinze dias. Os tratamentos foram: 1. azoxystrobin, 2. carbendazim, 3. clorotalonil + tiofanato-metílico, 4. difenoconazole e 5. testemunha. Simultaneamente foram feitas avaliações seguindo uma escala de notas de 1 a 6. O delineamento experimental do teste in vitro dos extratos vegetais foi em fatorial 5x4, com três repetições. Os tratamentos avaliados foram os extratos de: mil folhas, melão de são caetano, eucalipto , álcool e testemunha, nas concentrações de 5, 10, 15 e 20%. Os extratos e o álcool foram misturados ao meio de cultura previamente autoclavado, sendo estes colocados em placas de Petri. A avaliação foi feita através de medição diária do crescimento radial do micélio em centímetros. No teste com mudas o delineamento experimental foi em fatorial 2 x 2 x 4, sendo utilizado no experimento de duas procedências, dois modos de tratamento (preventivo e convencional) e quatro produtos para o controle (extrato de melão de são caetano, extrato de Corymbia citriodora, álcool e água). A inoculação do patógeno foi feita no caule das mudas. Foram feitas aplicações dos produtos e avaliações semanais. A avaliação foi feita através da contagem de plantas doentes. O ingrediente ativo carbendazin foi o que mostrou os melhores resultados in vitro diferindo estatísticamente dos outros tratamentos pelo teste Tukey a 1% de probabilidade; seguido pelo clorotalonil e difenoconazole. Todos os ingredientes ativos avaliados mostraram-se superiores a testemunha. A campo, azoxystrobin foi superior aos demais tratamentos e não houve diferença significativa entre os métodos de aplicação. In vitro, os extratos de mil folhas, melão e eucalipto não diferiram entre si pelo teste de Tukey a 5% de probabilidade. O álcool proporcionou a maior inibição do crescimento micelial e diferiu estatisticamente dos outros tratamentos utilizados. As concentrações de 10, 15 e 20% dos extratos não diferiram entre si, mas foram superiores a concentração de 5%. No teste em mudas, a aplicação preventiva mostrou-se superior a aplicação curativa, sendo que o álcool e o extrato de C. citriodora não diferiram entre si, mas foram superiores ao extrato de melão-de-são-caetano. Todos os produtos foram superiores a testemunha.

Prevalência e fatores de risco à persistência de hábitos bucais de sucção não nutritiva em crianças de 3 a 5 anos de idade

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior

Comparação do ajuste dos modelos de morgan-mercer-flodin e de johnson-mehl-avrami na reação de precipitação na liga cu-3%al-5%ag

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)