La metáfora. Herramienta característica de renovación arquitectónica tras el movimiento moderno

Esta tesis estudia el papel de la metáfora como instrumento arquitectónico en el debate y las propuestas para superar la ortodoxia de la arquitectura moderna a partir de mediados del siglo XX. En arquitectura, la utilización del procedimiento que constituye la metáfora se apoya en una consideración semántica de la arquitectura y se ha usado constantemente a lo largo de la historia para desarrollar nuevas propuestas, basándose en la comparación con modelos conocidos. En este trabajo se examina la notable presencia que adquirió este instrumento en las propuestas críticas a la arquitectura moderna ortodoxa, debido a la importancia que tuvieron los aspectos semánticos en el debate sobre la continuidad y vigencia de los postulados de la arquitectura moderna. Con este estudio se ha indagado sobre las razones y la frecuencia con las que aquellos arquitectos que adoptaron una actitud crítica hacia la arquitectura moderna se refirieron a las relaciones metafóricas en sus propuestas alternativas. Para mostrar cómo las metáforas formaron parte de los mecanismos de cambio de la arquitectura en este periodo, recuperando un mayor potencial creativo para abordar los proyectos arquitectónicos, se han estudiado una serie de ejemplos pertinentes y relevantes. En cada uno de los capítulos se han analizado las objeciones más importantes que fueron planteadas frente a la arquitectura moderna por un arquitecto o grupo de arquitectos, seleccionados entre aquéllos que tomaron parte en este debate, y se estudia la inclusión de la metáfora en las alternativas que propusieron en cada caso. Además de una actitud crítica con la arquitectura moderna, todos los arquitectos seleccionados comparten una consideración semántica de la arquitectura y han expuesto sus ideas y posturas tanto en obras proyectadas y construidas, como en escritos o comentarios sobre su manera de entender y proyectar arquitectura. Esta doble producción ha permitido analizar, comparativamente, el papel de la metáfora en sus enfoques y propuestas críticas y en la realización de sus obras como alternativas a las mismas. Al mismo tiempo, la investigación profundiza en el conocimiento de la utilización de la metáfora como herramienta arquitectónica. A través del recorrido por las distintas maneras de entender este instrumento que pueden observarse en algunos de los arquitectos de la segunda mitad del siglo XX, se exponen tanto las posibilidades como los aspectos más críticos de la utilización de la metáfora en arquitectura. La variada utilización de la noción de metáfora en arquitectura se ve reflejada en las diversas consideraciones que hacen de la misma los arquitectos estudiados. La tesis se ha ocupado de distinguir cada uno de estos enfoques, haciéndose eco de la pluralidad con la que puede abordarse el concepto de metáfora de manera general y en arquitectura en particular. Así, algunos arquitectos del Team 10, la utilizan como un instrumento de ampliación y renovación semántica de la arquitectura moderna, que propone una síntesis de lo viejo y lo nuevo. Para Robert Venturi, se trata de un recurso con capacidad de persuadir y recrear, renovando semánticamente la arquitectura. Charles Jencks considera que es un procedimiento semántico esencial de la arquitectura, olvidado por los arquitectos modernos, cuya recuperación supone un rasgo diferencial de la arquitectura posmoderna respecto a la moderna. Para Aldo Rossi, es una manera de materializar las relaciones analógicas que constituyen su propuesta para proyectar una arquitectura de racionalismo exaltado frente a un racionalismo convencional. Peter Eisenman la valora porque inventa otras arquitecturas diferentes a las preconcebidas anteriormente, a pesar de que rechaza su capacidad representativa y expresiva. Rafael Moneo la utiliza para contraponerse al determinismo, como instrumento de innovación de la forma arquitectónica que construye una dinámica entre la contingencia y la necesidad. Finalmente, para Frank Gehry supone un procedimiento creativo y subjetivo con el que enfrentarse tanto a la arquitectura moderna como a la posmoderna con una arquitectura nueva y abierta a referencias inusuales. De esta manera, a través de los distintos capítulos, el estudio pretende componer un mosaico de posturas que manifieste los vínculos y las diferencias existentes entre estos arquitectos con relación a los temas estudiados: crítica y alternativas a la arquitectura moderna, semántica de la arquitectura, metáfora y otros conceptos relacionados. A su vez, la aparición continuada de la metáfora en los diferentes capítulos, y de los temas con los que está relacionada, manifiesta el protagonismo de esta herramienta arquitectónica en las propuestas de evolución y cambio de la arquitectura del periodo estudiado. ABSTRACT This thesis studies the role of the metaphor as an architectural tool in the debate and proposals to overcome the orthodoxy of modern architecture that took place since the middle part of the Twentieth Century. In architecture, the usage of the process which the metaphor constitutes is based in a semantic consideration of architecture and historically it has been used many times to develop new proposals, always based in the comparison with known models. This work examines the significant presence that this tool acquired in the proposals critical with orthodox modern architecture, due to the importance that the semantic aspects had in the debate on the continuity and validity of modern architecture’s postulates. This study also looks into the motives and frequency that those architects which adopted a critical attitude towards modern architecture alluded to the metaphorical relations in their alternative proposals. To demonstrate how during that period metaphors were imbued in the mechanisms of change of architecture, recovering a higher creative potential to approach architectural projects, a series of pertinent and relevant examples are studied. Each chapter examines the most important objections on modern architecture made by an architect or group of architects, selected among those who participated in this debate, and studies the inclusion of metaphor in the alternatives proposed in each case. Besides a critical attitude towards modern architecture, all the selected architects share a semantic consideration of architecture and have exposed their ideas and postures through projected and finalized works as in writings or commentaries on their way of understanding and projecting architecture. This double production allowed to analyse, in a comparatively manner, the role of metaphor in their approaches and critical proposals as in the execution of their works. At the same time, the research conducted further analyses the body of knowledge on the usage of metaphor as an architectural tool. By looking over the different ways some of the architects of the second half of the Twentieth Century understood this tool, both the possibilities and the most critical aspects of the usage of the metaphor in architecture can be exposed. The various usages of the notion of metaphor in architecture are reflected in the multiple considerations done about it by the selected architects. This thesis differentiates each one of those approaches, echoing the plurality with which the concept of metaphor can be addressed both in broader terms and more particularly in architecture. In this sense, some architects of Team 10 used it as a mean of semantic extension and renewal of modern architecture, proposing a synthesis between the old and the new. For Robert Venturi it is a resource with the capacity to persuade and recreate, semantically renewing architecture. Charles Jencks considers it an essential semantic procedure of architecture, forgotten by the modern architects, and which recovery represents a differential trait of post-modern architecture in relation to modern architecture. For Aldo Rossi, is a way of materializing the analogical relations which represent his proposal to project architecture of exalted rationalism as opposed to a more conventional rationalism. Peter Eisenman values it because it invents other architectures different from the preconceived before, even if he refuses its representational and expressive capacity. Rafael Moneo uses it to counter determinism, as an innovation tool of the architectonical form which generates dynamics between contingency and necessity. Finally, for Frank Gehry it supposes a creative and subjective process to face both modern architecture and post-modern architecture with a new architecture open to unusual references. As such, through its different chapters, this study aims to compose a mosaic of postures which expresses the links and the differences between those architects in relation to the topics examined: criticism and alternatives to modern architecture, semantics of architecture, metaphor and other related concepts. At the same time, the continuous presence of the metaphor in the different chapters, and of the issues it relates to, shows the importance of this tool in the proposals of evolution and change of architecture in the period considered.

Conditions for perfect focusing multiple point sources with the SMS design method

In this work, we demonstrate how it is possible to sharply image multiple object points. The Simultaneous Multiple Surface (SMS) design method has usually been presented as a method to couple N wave-front pairs with N surfaces, but recent findings show that when using N surfaces, we can obtain M image points when Nevolution of SMS method, from its basics, to imaging two object points through one surface, the transition from two to three objet points obtained by increasing the parallelism, and getting to the designs of six surfaces imaging up to eight object points. These designs are limited with the condition that the surfaces cannot be placed at the aperture stop. In the process of maximizing the object points to sharp image, we try to exhaust the degrees of freedom of aspherics and free-forms. We conjecture that maximal SMS designs are very close to a good solution, hence using them as a starting point for the optimization will lead us faster to a final optical system. We suggest here different optimization strategies which combined with the SMS method are proven to give the best solution. Through the example of imaging with the high aspect ratio, we compare the results obtained optimizing the rotational lens and using a combination of SMS method and optimization, showing that the second approach is giving significantly smaller value of overall RMS spot diameter.

Mutually compensatory mutations during evolution of the tetramerization domain of tumor suppressor p53 lead to impaired hetero-oligomerization

We have measured the stability and stoichiometry of variants of the human p53 tetramerization domain to assess the effects of mutation on homo- and hetero-oligomerization. The residues chosen for mutation were those in the hydrophobic core that we had previously found to be critical for its stability but are not conserved in human p73 or p51 or in p53-related proteins from invertebrates or vertebrates. The mutations introduced were either single natural mutations or combinations of mutations present in p53-like proteins from different species. Most of the mutations were substantially destabilizing when introduced singly. The introduction of multiple mutations led to two opposite effects: some combinations of mutations that have occurred during the evolution of the hydrophobic core of the domain in p53-like proteins had additive destabilizing effects, whereas other naturally occurring combinations of mutations had little or no net effect on the stability, there being mutually compensating effects of up to 9.5 kcal/mol of tetramer. The triple mutant L332V/F341L/L344I, whose hydrophobic core represents that of the chicken p53 domain, was nearly as stable as the human domain but had impaired hetero-oligomerization with it. Thus, engineering of a functional p53 variant with a reduced capacity to hetero-oligomerize with wild-type human p53 can be achieved without any impairment in the stability and subunit affinity of the engineered homo-oligomer.

Evolution of microbial diversity during prolonged starvation

Models of evolutionary processes postulate that new alleles appear in populations through random spontaneous mutation. Alleles that confer a competitive advantage in particular environments are selected and populations can be taken over by individuals expressing these advantageous mutations. We have studied the evolutionary process by using Escherichia coli cultures incubated for prolonged periods of time in stationary phase. The populations of surviving cells were shown to be highly dynamic, even after many months of incubation. Evolution proceeded along different paths even when the initial conditions were identical. As cultures aged, the takeovers by fitter mutants were incomplete, resulting in the coexistence of multiple mutant forms and increased microbial diversity. Thus, the study of bacterial populations in stationary phase provides a model system for understanding the evolution of diversity in natural populations.

Fluorescence in situ hybridization analysis of keratinocyte growth factor gene amplification and dispersion in evolution of great apes and humans

Keratinocyte growth factor (KGF) is a member of the fibroblast growth factor family. Portions of the gene encoding KGF were amplified during primate evolution and are present in multiple nonprocessed copies in the human genome. Nucleotide analysis of a representative sampling of these KGF-like sequences indicated that they were at least 95% identical to corresponding regions of the KGF gene. To localize these sequences to specific chromosomal sites in human and higher primates, we used fluorescence in situ hybridization. In human, using a cosmid probe encoding KGF exon 1, we assigned the location of the KGF gene to chromosome 15q15–21.1. In addition, copies of KGF-like sequences hybridizing only with a cosmid probe encoding exons 2 and 3 were localized to dispersed sites on chromosome 2q21, 9p11, 9q12–13, 18p11, 18q11, 21q11, and 21q21.1. The distribution of KGF-like sequences suggests a role for alphoid DNA in their amplification and dispersion. In chimpanzee, KGF-like sequences were observed at five chromosomal sites, which were each homologous to sites in human, while in gorilla, a subset of four of these homologous sites was identified; in orangutan two sites were identified, while gibbon exhibited only a single site. The chromosomal localization of KGF sequences in human and great ape genomes indicates that amplification and dispersion occurred in multiple discrete steps, with initial KGF gene duplication and dispersion taking place in gibbon and involving loci corresponding to human chromosomes 15 and 21. These findings support the concept of a closer evolutionary relationship of human and chimpanzee and a possible selective pressure for such dispersion during the evolution of higher primates.

Origin and evolution of the slime molds (Mycetozoa)

The Mycetozoa include the cellular (dictyostelid), acellular (myxogastrid), and protostelid slime molds. However, available molecular data are in disagreement on both the monophyly and phylogenetic position of the group. Ribosomal RNA trees show the myxogastrid and dictyostelid slime molds as unrelated early branching lineages, but actin and β-tubulin trees place them together as a single coherent (monophyletic) group, closely related to the animal–fungal clade. We have sequenced the elongation factor-1α genes from one member of each division of the Mycetozoa, including Dictyostelium discoideum, for which cDNA sequences were previously available. Phylogenetic analyses of these sequences strongly support a monophyletic Mycetozoa, with the myxogastrid and dictyostelid slime molds most closely related to each other. All phylogenetic methods used also place this coherent Mycetozoan assemblage as emerging among the multicellular eukaryotes, tentatively supported as more closely related to animals + fungi than are green plants. With our data there are now three proteins that consistently support a monophyletic Mycetozoa and at least four that place these taxa within the “crown” of the eukaryote tree. We suggest that ribosomal RNA data should be more closely examined with regard to these questions, and we emphasize the importance of developing multiple sequence data sets.

Evolution of foraging behavior in Drosophila by density-dependent selection

One of the rare examples of a single major gene underlying a naturally occurring behavioral polymorphism is the foraging locus of Drosophila melanogaster. Larvae with the rover allele, forR, have significantly longer foraging path lengths on a yeast paste than do those homozygous for the sitter allele, fors. These variants do not differ in general activity in the absence of food. The evolutionary significance of this polymorphism is not as yet understood. Here we examine the effect of high and low animal rearing densities on the larval foraging path-length phenotype and show that density-dependent natural selection produces changes in this trait. In three unrelated base populations the long path (rover) phenotype was selected for under high-density rearing conditions, whereas the short path (sitter) phenotype was selected for under low-density conditions. Genetic crosses suggested that these changes resulted from alterations in the frequency of the fors allele in the low-density-selected lines. Further experiments showed that density-dependent selection during the larval stage rather than the adult stage of development was sufficient to explain these results. Density-dependent mechanisms may be sufficient to maintain variation in rover and sitter behavior in laboratory populations.

Intracellular gene transfer in action: Dual transcription and multiple silencings of nuclear and mitochondrial cox2 genes in legumes

The respiratory gene cox2, normally present in the mitochondrion, was previously shown to have been functionally transferred to the nucleus during flowering plant evolution, possibly during the diversification of legumes. To search for novel intermediate stages in the process of intracellular gene transfer and to assess the evolutionary timing and frequency of cox2 transfer, activation, and inactivation, we examined nuclear and mitochondrial (mt) cox2 presence and expression in over 25 legume genera and mt cox2 presence in 392 genera. Transfer and activation of cox2 appear to have occurred during recent legume evolution, more recently than previously inferred. Many intermediate stages of the gene transfer process are represented by cox2 genes in the studied legumes. Nine legumes contain intact copies of both nuclear and mt cox2, although transcripts could not be detected for some of these genes. Both cox2 genes are transcribed in seven legumes that are phylogenetically interspersed with species displaying only nuclear or mt cox2 expression. Inactivation of cox2 in each genome has taken place multiple times and in a variety of ways, including loss of detectable transcripts or transcript editing and partial to complete gene loss. Phylogenetic evidence shows about the same number (3–5) of separate inactivations of nuclear and mt cox2, suggesting that there is no selective advantage for a mt vs. nuclear location of cox2 in plants. The current distribution of cox2 presence and expression between the nucleus and mitochondrion in the studied legumes is probably the result of chance mutations silencing either cox2 gene.

Molecular evidence for multiple origins of woodiness and a New World biogeographic connection of the Macaronesian Island endemic Pericallis (Asteraceae: Senecioneae)

The prevalence of woody species in oceanic islands has attracted the attention of evolutionary biologists for more than a century. We used a phylogeny based on sequences of the internal-transcribed spacer region of nuclear ribosomal DNA to trace the evolution of woodiness in Pericallis (Asteraceae: Senecioneae), a genus endemic to the Macaronesian archipelagos of the Azores, Madeira, and Canaries. Our results show that woodiness in Pericallis originated independently at least twice in these islands, further weakening some previous hypotheses concerning the value of this character for tracing the continental ancestry of island endemics. The same data suggest that the origin of woodiness is correlated with ecological shifts from open to species-rich habitats and that the ancestor of Pericallis was an herbaceous species adapted to marginal habitats of the laurel forest. Our results also support Pericallis as closely related to New World genera of the tribe Senecioneae.

Stochastic processes strongly influence HIV-1 evolution during suboptimal protease-inhibitor therapy

It has long been assumed that HIV-1 evolution is best described by deterministic evolutionary models because of the large population size. Recently, however, it was suggested that the effective population size (Ne) may be rather small, thereby allowing chance to influence evolution, a situation best described by a stochastic evolutionary model. To gain experimental evidence supporting one of the evolutionary models, we investigated whether the development of resistance to the protease inhibitor ritonavir affected the evolution of the env gene. Sequential serum samples from five patients treated with ritonavir were used for analysis of the protease gene and the V3 domain of the env gene. Multiple reverse transcription–PCR products were cloned, sequenced, and used to construct phylogenetic trees and to calculate the genetic variation and Ne. Genotypic resistance to ritonavir developed in all five patients, but each patient displayed a unique combination of mutations, indicating a stochastic element in the development of ritonavir resistance. Furthermore, development of resistance induced clear bottleneck effects in the env gene. The mean intrasample genetic variation, which ranged from 1.2% to 5.7% before treatment, decreased significantly (P < 0.025) during treatment. In agreement with these findings, Ne was estimated to be very small (500–15,000) compared with the total HIV-1 RNA copy number. This study combines three independent observations, strong population bottlenecking, small Ne, and selection of different combinations of protease-resistance mutations, all of which indicate that HIV-1 evolution is best described by a stochastic evolutionary model.

The evolution of begging: Signaling and sibling competition

In many species, young solicit food from their parents, which respond by feeding them. Because of the difference in genetic make-up between parents and their offspring and the consequent conflict, this interaction is often studied as a paradigm for the evolution of communication. Existent theoretical models demonstrate that chick signaling and parent responding can be stable if solicitation is a costly signal. The marginal cost of producing stronger signals allows the system to converge to an equilibrium: young beg with intensity that reflects their need, and parents use this information to maximize their own inclusive fitness. However, we show that there is another equilibrium where chicks do not beg and parents’ provisioning effort is optimal with respect to the statistically probable distribution of chicks’ states. Expected fitness for parents and offspring at the nonsignaling equilibrium is higher than at the signaling equilibrium. Because nonsignaling is stable and it is likely to be the ancestral condition, we would like to know how natural systems evolved from nonsignaling to signaling. We suggest that begging may have evolved through direct sibling fighting before the establishment of a parental response, that is, that nonsignaling squabbling leads to signaling. In multiple-offspring broods, young following a condition-dependent strategy in the contest for resources provide information about their condition. Parents can use this information even though it is not an adaptation for communication, and evolution will lead the system to the signaling equilibrium. This interpretation implies that signaling evolved in multiple-offspring broods, but given that signaling is evolutionarily stable, it would also be favored in species which secondarily evolved single-chick broods.

Multiple independent transpositions of mitochondrial DNA control region sequences to the nucleus

Transpositions of mtDNA sequences to the nuclear genome have been documented in a wide variety of individual taxa, but little is known about their taxonomic frequency or patterns of variation. We provide evidence of nuclear sequences homologous to the mtDNA control region in seven species of diving ducks (tribe Aythyini). Phylogenetic analysis places each nuclear sequence as a close relative of the mtDNA haplotypes of the specie(s) in which it occurs, indicating that they derive from six independent transposition events, all occurring within the last ≈1.5 million years. Relative-rate tests and comparison of intraspecific variation in nuclear and mtDNA sequences confirm the expectation of a greatly reduced rate of evolution in the nuclear copies. By representing mtDNA haplotypes from ancestral populations, nuclear insertions may be valuable in some phylogenetic analyses, but they also confound the accurate determination of mtDNA sequences. In particular, our data suggest that the presumably nonfunctional but more slowly evolving nuclear sequences often will not be identifiable by changes incompatible with function and may be preferentially amplified by PCR primers based on mtDNA sequences from related taxa.

Adaptive evolution of a candidate gene for aging in Drosophila

Examination of the phenotypic effects of specific mutations has been extensively used to identify candidate genes affecting traits of interest. However, such analyses do not reveal anything about the evolutionary forces acting at these loci, or whether standing allelic variation contributes to phenotypic variance in natural populations. The Drosophila gene methuselah (mth) has been proposed as having major effects on organismal stress response and longevity phenotype. Here, we examine patterns of polymorphism and divergence at mth in population level samples of Drosophila melanogaster, D. simulans, and D. yakuba. Mth has experienced an unusually high level of adaptive amino acid divergence concentrated in the intra- and extracellular loop domains of the receptor protein, suggesting the historical action of positive selection on those regions of the molecule that modulate signal transduction. Further analysis of single nucleotide polymorphisms (SNPs) in D. melanogaster provided evidence for contemporary and spatially variable selection at the mth locus. In ten surveyed populations, the most common mth haplotype exhibited a 40% cline in frequency that coincided with population level differences in multiple life-history traits including lifespan. This clinal pattern was not associated with any particular SNP in the coding region, indicating that selection is operating at a closely linked site that may be involved in gene expression. Together, these consistently nonneutral patterns of inter- and intraspecific variation suggest adaptive evolution of a signal transduction pathway that may modulate lifespan in nature.

Multiple independent origins of mitochondrial gene order in birds

Mitochondrial genomes of all vertebrate animals analyzed to date have the same 37 genes, whose arrangement in the circular DNA molecule varies only in the relative position of a few genes. This relative conservation suggests that mitochondrial gene order characters have potential utility as phylogenetic markers for higher-level vertebrate taxa. We report discovery of a mitochondrial gene order that has had multiple independent originations within birds, based on sampling of 137 species representing 13 traditionally recognized orders. This provides evidence of parallel evolution in mitochondrial gene order for animals. Our results indicate operation of physical constraints on mitochondrial gene order changes and support models for gene order change based on replication error. Bird mitochondria have a displaced OL (origin of light-strand replication site) as do various other Reptilia taxa prone to gene order changes. Our findings point to the need for broad taxonomic sampling in using mitochondrial gene order for phylogenetic analyses. We found, however, that the alternative mitochondrial gene orders distinguish the two primary groups of songbirds (order Passeriformes), oscines and suboscines, in agreement with other molecular as well as morphological data sets. Thus, although mitochondrial gene order characters appear susceptible to some parallel evolution because of mechanistic constraints, they do hold promise for phylogenetic studies.

Molecular evolution of two vertebrate aryl hydrocarbon (dioxin) receptors (AHR1 and AHR2) and the PAS family

The aryl hydrocarbon receptor (AHR) is a ligand-activated transcription factor through which halogenated aromatic hydrocarbons such as 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) cause altered gene expression and toxicity. The AHR belongs to the basic helix–loop–helix/Per-ARNT-Sim (bHLH-PAS) family of transcriptional regulatory proteins, whose members play key roles in development, circadian rhythmicity, and environmental homeostasis; however, the normal cellular function of the AHR is not yet known. As part of a phylogenetic approach to understanding the function and evolutionary origin of the AHR, we sequenced the PAS homology domain of AHRs from several species of early vertebrates and performed phylogenetic analyses of these AHR amino acid sequences in relation to mammalian AHRs and 24 other members of the PAS family. AHR sequences were identified in a teleost (the killifish Fundulus heteroclitus), two elasmobranch species (the skate Raja erinacea and the dogfish Mustelus canis), and a jawless fish (the lamprey Petromyzon marinus). Two putative AHR genes, designated AHR1 and AHR2, were found both in Fundulus and Mustelus. Phylogenetic analyses indicate that the AHR2 genes in these two species are orthologous, suggesting that an AHR gene duplication occurred early in vertebrate evolution and that multiple AHR genes may be present in other vertebrates. Database searches and phylogenetic analyses identified four putative PAS proteins in the nematode Caenorhabditis elegans, including possible AHR and ARNT homologs. Phylogenetic analysis of the PAS gene family reveals distinct clades containing both invertebrate and vertebrate PAS family members; the latter include paralogous sequences that we propose have arisen by gene duplication early in vertebrate evolution. Overall, our analyses indicate that the AHR is a phylogenetically ancient protein present in all living vertebrate groups (with a possible invertebrate homolog), thus providing an evolutionary perspective to the study of dioxin toxicity and AHR function.