Cloning and characterization of the full length cDNA and promoter of mouse tissue transglutaminase

Transglutaminases are a family of enzymes that catalyze the covalent cross-linking of proteins through the formation of $\varepsilon$-($\gamma$-glutaminyl)-lysyl isopeptide bonds. Tissue transglutaminase (Tgase) is an intracellular enzyme which is expressed in terminally differentiated and senescent cells and also in cells undergoing apoptotic cell death. To characterize this enzyme and examine its relationship with other members of the transglutaminase family, cDNAs, the first two exons of the gene and 2 kb of the 5$\sp\prime$ flanking region, including the promoter, were isolated. The full length Tgase transcript consists of 66 bp of 5$\sp\prime$-UTR (untranslated) sequence, an open reading frame which encodes 686 amino acids and 1400 bp of 3$\sp\prime$-UTR sequence. Alignment of the deduced Tgase protein sequence with that of other transglutaminases revealed regions of strong homology, particularly in the active site region.^ The Tgase cDNA was used to isolate and characterize a genomic clone encompassing the 5$\sp\prime$ end of the mouse Tgase gene. The transcription start site was defined using genomic and cDNA clones coupled with S1 protection analysis and anchored PCR. This clone includes 2.3 kb upstream of the transcription start site and two exons that contain the first 256 nucleotides of the mouse Tgase cDNA sequence. The exon intron boundaries have been mapped and compared with the exon intron boundaries of three members of the transglutaminase family: human factor XIIIa, the human keratinocyte transglutaminase and human erythrocyte band 4.1. Tissue Tgase exon II is similar to comparable exons of these genes. However, exon I bears no resemblance with any of the other transglutaminase amino terminus exons.^ Previous work in our laboratory has shown that the transcription of the Tgase gene is directly controlled by retinoic acid and retinoic acid receptors. To identify the region of the Tgase gene responsible for regulating its expression, fragments of the Tgase promoter and 5$\sp\prime$-flanking region were cloned into the chloramphenicol actetyl transferase (CAT) reporter constructs. Transient transfection experiments with these constructs demonstrated that the upstream region of Tgase is a functional promoter which contains a retinoid response element within a 1573 nucleotide region spanning nucleotides $-$252 to $-$1825. ^

Minimal DNA sequences that control the cell lineage-specific expression of the pro$\alpha$2(I) collagen promoter in transgenic mice

The pattern of expression of the pro$\alpha$2(I) collagen gene is highly tissue-specific in adult mice and shows its strongest expression in bones, tendons, and skin. Transgenic mice were generated harboring promoter fragments of the mouse pro$\alpha$2(I) collagen gene linked to the Escherichia coli $\beta$-galactosidase or firefly luciferase genes to examine the activity of these promoters during development. A region of the mouse pro$\alpha$2(I) collagen promoter between $-$2000 and +54 exhibited a pattern of $\beta$-galactosidase activity during embryonic development that corresponded to the expression pattern of the endogenous pro$\alpha$2(I) collagen gene as determined by in situ hybridization. A similar pattern of activity was also observed with much smaller promoter fragments containing either 500 or 350 bp of upstream sequence relative to the start of transcription. Embryonic regions expressing high levels of $\beta$-galactosidase activity included the valves of the developing heart, sclerotomes, meninges, limb buds, connective tissue fascia between muscle fibers, osteoblasts, tendon, periosteum, dermis, and peritoneal membranes. The pattern of $\beta$-galactosidase activity was similar to the extracellular immunohistochemical localization of transforming growth factor-$\beta$1 (TGF-$\beta$1). The $-$315 to $-$284 region of the pro$\alpha$2(I) collagen promoter was previously shown to mediate the stimulatory effects of TGF-$\beta$1 on the pro$\alpha$2(I) collagen promoter in DNA transfection experiments with cultured fibroblasts. A construct containing this sequence tandemly repeated 5$\sp\prime$ to both a very short $\alpha$2(I) collagen promoter ($-$40 to +54) and a heterologous minimal promoter showed preferential activity in tail and skin of 4-week old transgenic mice. The pattern of expression mimics that of the $-$350 to +54 pro$\alpha$2(I) collagen promoter linked to a luciferase reporter gene in transgenic mice. ^

Characterization of the cholesterol 7$\alpha$-hydroxylase promoter in hypercholesterolemia -resistant rabbits

Our laboratory has developed and partially characterized a strain of New Zealand white rabbits that are resistant to the hypercholesterolemia which typically occurs in normal rabbits when fed a cholesterol-enriched diet. This phenotype is most likely attributed to an increase in bile acid excretion by hypercholesterolemia-resistant (CRT) rabbits as a result of elevated enzyme activity of cholesterol 7$\alpha$-hydroxylase (C7$\alpha$H), the rate-limiting enzyme in bile acid synthesis. Northern analysis revealed that CRT rabbits, in comparison to normal rabbits, have a 7-fold greater steady-state C7$\alpha$H mRNA levels irrespective of dietary regimen. The C7$\alpha$H gene in both phenotypes was determined to be a single copy gene. The hypothesis was that the elevated C7$\alpha$H mRNA levels in CRT rabbits, in comparison to normal animals, was due to an increase in the transcription rate of the C7$\alpha$H gene as a result of a mutation in a cis-acting element and/or a trans-acting factor within the hepatocyte. To isolate the C7$\alpha$H gene from both normal and CRT rabbits, genomic libraries were prepared from both phenotypes into $\lambda$GEM12 vectors using conventional techniques. Three CRT and one normal phage clones that contained the C7$\alpha$H gene were identified by screening the library with a series of probes located within different exons of the C7$\alpha$H cDNA. Sequencing analysis confirmed that approximately 1100 bp of the C7$\alpha$H 5'-flanking region from both normal and CRT phenotypes was identical. The increase in C7$\alpha$H mRNA levels was not attributed to a cis-acting mutation within this region. Liver nuclear extracts were prepared from normal and CRT rabbits maintained either on a basal or 0.25% cholesterol-enriched diet and incubated with several radiolabeled DNA fragments from the C7$\alpha$H gene. A 37 basepair region, located between nucleotides $-$452 to $-$416 was identified that had altered binding patterns between normal and CRT rabbits as a function of diet. Two additional regions, $-$747 to $-$575 and $-$580 to $-$442, produced banding patterns which were identical, irrespective of phenotype or diet. In conclusion, these studies suggested that the increase in C7$\alpha$H mRNA in CRT rabbits was due to differences in binding of a cholesterol-responsive transcription factor to the C7$\alpha$H promoter. ^

Strontium and Neodymium isotope composition of sediments from the North Atlantic

Sr and Nd isotopic compositions have been measured on the lithic fraction of last climatic cycle sediments from the North Atlantic (~40°N/~60°N), in order to identify the origins of the particles. From the reconstruction of their transport pathways, we deduce the mechanisms that explain their distributions. The main source regions are the Canadian shield (mostly the area of Baffin Bay and western Greenland), the Scandinavian shield, the European region (British Isles and Bay of Biscay), and Iceland. We observe a significant glacial/interglacial contrast, characterized by a dominant Icelandic input via near-bottom transport by North Atlantic Deep Water (NADW) during the interglacials and a largely continent-derived contribution of surface-transported, ice-rafted detritus (IRD) during the glacial period. During the last glacial period, the Heinrich events (abrupt, massive discharges of IRD) originated not only from the Laurentide ice sheet as heretofore envisioned but also from other sources. Three other major North Atlantic ice sheets (Fennoscandian, British Isles, and Icelandic) probably surged simultaneously, discharging ice and IRD into the North Atlantic. As opposed to theories implying a unique, Laurentide origin [Gwiazda et al., 1996 doi:10.1029/95PA03135] driven by an internal mechanism [MacAyeal, 1993 doi:10.1029/93PA02200], we confirm that the Icelandic and the Fennoscandian ice sheets also surged as recently proposed by other authors, and we here also distinguish a possible detrital contribution from the British Isles ice sheet. This pan-North Atlantic phenomenon thus requires a common regional, external forcing.

Geochemistry of last glacial sediments of Isla de los Estados, southeastern Tierra del Fuego

The island of Isla de los Estados is situated at 54.5°S, 64°W, east of Argentinian Tierra del Fuego, and is located in a sensitive geographic position in relation to the zonal circulation between Antarctica and South America. Its terrestrial records of the last deglaciation, recording atmospheric conditions but within an oceanic setting, can help to clarify changes of regional circulation patterns, both atmospheric and marine. Here, we present geochemical analyses from 16-10 ka cal BP of a peat core from Lago Galvarne Bog at the northern coast of the island, and a lake sediment core from Laguna Cascada 3 km further south. The data comprise TC, TN, loss on ignition analyses and continuous XRF scanning on both cores as well as age-depth modeling based on AMS-14C dating. Deglaciation and onset of peat formation in the coastal areas began before 16 ka cal BP followed by a rapid glacial retreat and the start of lacustrine sedimentation further inland. Data suggest initially windy conditions with permafrost succeeded by gradually warmer and wetter conditions until ca 14.5 ka cal BP. The warming trend slows down until ca 13.5 ka cal BP, followed by arid conditions culminating around 12.8 ka cal BP. Our data suggest fairly warm conditions and the establishment of denser peat and forest vegetation ca 10.6 ka cal BP, contemporaneous with the onset of the Antarctic thermal optimum. This indicates large-scale shifts in the placement of zonal flow and the Westerlies at the beginning of the Holocene.