Conservation status assessment of the amphibians and reptiles of Uruguay

The native species of amphibians and reptiles of Uruguay were categorized according to the IUCN Red List criteria. Out of 47 amphibian species, seven are listed as Critically Endangered (CR), five as Endangered (EN), one as Vulnerable (VU), three as Near Threatened (NT), and two as Data Deficient (DD); the remaining species are considered to be Least Concern (LC). Among the 64 species of reptiles evaluated, one is listed as Critically Endangered (CR), seven as Endangered (EN), two as Vulnerable (VU), one as Near Threatened (NT) and seven as Data Deficient (DD); the rest are considered to be Least Concern (LC). The use of these results as an additional criterion in the definition of protected areas in Uruguay will contribute towards the conservation of the aforementioned threatened species and their associated ecosystems.

New and significant bird records from Rio Grande do Sul, with comments on biogeography and conservation of the southern Brazilian avifauna

I report on the occurrence of 16 species of birds in Rio Grande do Sul, southern Brazil, of which seven are new for the state - Accipiter superciliosus (Linnaeus, 1766), Brotogeris tirica (Gmelin, 1788), Hemitriccus margaritaceiventer (d'Orbigny & Lafresnaye, 1837), Phyllomyias griseocapilla Sclater, 1862, Saltator coerulescens Vieillot, 1817, Orthogonys chloricterus (Vieillot, 1819), and Sporophila lineola (Linnaeus, 1758) - and seven were previously known from unsubstantiated or poorly documented records - Ixobrychus exilis (Gmelin, 1789), Brotogeris chiriri (Vieillot, 1818), Coccyzus euleri Cabanis, 1873, Pulsatrix koeniswaldiana (Bertoni & Bertoni, 1901), Psilorhamphus guttatus (Ménétriès, 1835), Serpophaga griseicapilla Straneck, 2007, and Hemithraupis ruficapilla (Vieillot, 1818). Descriptive and natural history notes are presented for some of these species. The records of B. tirica, P. guttatus, P. griseocapilla, Myiozetetes similis (Spix, 1825), O. chloricterus, H. ruficapilla, and S. lineola represent significant southward range extensions of up to 300 km. Also, a new confirmed record of Myiarchus ferox (Statius Muller, 1776) is divulged. Finally, I argue that the Atlantic forests of north-eastern Rio Grande do Sul should be included in the Serra do Mar area of endemism (sensu SILVA et al., 2004) because of the presence of Orthogonys chloricterus, and comment on the possible range expansion of Myiozetetes similis, Sporophila lineola and other primarily tropical species in southern Brazil.

Primatology in southern Brazil: a transdisciplinary approach to the conservation of the brown-howler-monkey Alouatta guariba clamitans (Primates, Atelidae)

Human interventions in natural environments are the main cause of biodiversity loss worldwide. The situation is not different in southern Brazil, home of five primate species. Although some earlier studies exist, studies on the primates of this region began to be consistently carried out in the 1980s and have continued since then. In addition to important initiatives to study and protect the highly endangered Leontopithecus caissara Lorrini & Persson, 1990 and Brachyteles arachnoides E. Geoffroy, 1806, other species, including locally threatened ones, have been the focus of research, management, and protection initiatives. Since 1993, the urban monkeys program (PMU, Programa Macacos Urbanos) has surveyed the distribution and assessed threats to populations of Alouatta guariba clamitans (Cabrera, 1940) in Porto Alegre and vicinity. PMU has developed conservation strategies on four fronts: (1) scientific research on biology and ecology, providing basic knowledge to support all other activities of the group; (2) conservation education, which emphasizes educational presentations and long-term projects in schools near howler populations, based on the flagship species approach; (3) management, analyzing conflicts involving howlers and human communities, focusing on mitigating these problems and on appropriate relocation of injured or at-risk individuals; and finally, (4) Public Policies aimed at reducing and/or preventing the impact of urban expansion, contributing to create protected areas and to strengthen environmental laws. These different approaches have contributed to protect howler monkey populations over the short term, indicating that working collectively and acting on diversified and interrelated fronts are essential to achieve conservation goals. The synergistic results of these approaches and their relationship to the prospects for primatology in southern Brazil are presented in this review.

Density estimates and conservation of Leopardus pardalis southernmost population of the Atlantic Forest

ABSTRACT Using camera traps and capture/recapture analyses we recorded the presence and abundance of cat species at Turvo State Park, in southern Brazil. Ocelot [Leopardus pardalis (Linnaeus, 1758)] population density was estimated for two areas of the park, with differing management profiles. Density estimates varied from 0.14 to 0.26 indiv. km2. Another five cat species were recorded at very low frequencies, precluding more accurate analyses. We estimate 24 to 45 ocelots occur in the reserve, which is probably too small for long-term maintenance of the population, if isolated. However, if habitat integrity and connectivity between the Park and the Green Corridor of Misiones is maintained, an estimated ocelot population of 1,680 individuals should have long-term viability.

Nature et faune : revue internationale pour la conservation de la nature en Afrique = Wildlife and nature : international journal on nature conservation in Africa.

2.3-4

Nature et faune : revue internationale pour la conservation de la nature en Afrique = Wildlife and nature : international journal on nature conservation in Africa.

6.4

Nature et faune : revue internationale pour la conservation de la nature en Afrique = Wildlife and nature : international journal on nature conservation in Africa.

21.2

Desenvolupament de mesures per comparar transculturalment xarxes personals (USA i Estats Units)

Estudi elaborat a partir d’una estada a la Universitat de Florida durant Abril i Maig de 2006. “Application to Immigrant Populations in South Florida and Northeastern Spain" ha permès recollir les xarxes personals d’immigrants en els dos països mitjançant un qüestionari implementat amb un software desenvolupat ex professo per recollir i presentar visualment les dades. Es van revisar i assemblar les entrevistes i qüestionaris realitzats a Catalunya i a Estats Units (Miami i Nova York, especialment). Fins al moment s’han revisat i analitzat uns 450 casos. Un cop depurada i analitzada la informació obtinguda s’ha pogut disposar per primer cop de mesures globals pels diferents col•lectius estudiats. L'objectiu global del projecte és entendre les implicacions que les estructures de les xarxes personals tenen en relació a un conjunt de conductes (de salut, d'ús de la llengua, etx) i les autoconcepcions. En aquest sentit era necessari desenvolupar un seguit de mesures que permetessin comparar i documentar la variació de les estructures de les xarxes personals a diferents cultures, nivells socioeconòmics, gènere, religió, etc. i incorporar-les com a variables independents als models explicatius.En aquest moments s’està desenvolupant un índex basat en variables estructurals (número de components de la xarxa, densitat, grau d’intermediació, etc.) i variables de composició (proporció de persones diferents del país d’origen, entre d'altres). La idea és disposar d’un índex d’heterogeneïtat de la xarxa social comparable entre els diferents col•lectius. Malgrat que el treball continua, la principal conclusió a la que s’ha arribat és que al menys a Espanya a mida que passa el temps augmenta el nivell d’heterogeneïtat de les xarxes personals. És a dir, que desprès d’un ràpid procés de canvi i una fase de transnacionalitat la tendència és a reduir aquest nivell (pels costos socials i econòmics que comporta) depenent, naturalment, de factors com l’origen temporal (primera onada o successives), el tipus de col•lectiu i el sexe.

Pla de gestió i conservació dels Estanyets de Pals i les Closes Fondes (Pals, Baix Empordà)

Es destaca la presència de tres espècies bioinvasores, tals com la gambúsia(Gambusiaaffinis), la canya (Arundodonax) i el cranc vermell americà (Procambarusclarkii). S’ha detectat que la qualitat de l’aigua ha disminuït en alguns paràmetres, especialment en l’Estanyet del Safareig. En els tres estanyets els sòlids dissolts totalsa TSD) estan al voltant del límit màxim recomanat per la EPA (Agència de Protecció Ambiental d’Estats Units). S’ha observat que la Cladophora, indicadora de concentracions elevades de nitrogen a l’aigua, és un cloròfit molt abundant. S’han identificat dos hàbitats d’interès comunitari no prioritari, segons la Directiva Hàbitats: les closes i les freixenedes termòfiles de Fraxinusangustifolia. En funció dels resultats obtinguts s’han elaborat les propostes de gestió i conservació per aquest espai.

Desenvolupament de dipòsits institucionals als Estats Units a partir de l'inici del 2005

Aquest article analitza la situació dels dipòsits institucionals als EUA mitjançant una enquesta realitzada per la CNI a les seves institucions acadèmiques. Amb aquesta enquesta s'obtingué informació sobre el grau d'implementació dels dipòsits i la seva extensió, així com del tipus de materials. A més, va servir per conèixer l'opinió de les institucions sobre els dipòsits, i va quedar palès que la major part de les que no en posseeixen, tenen previst posar-ne un en funcionament, tot i que els preocupi el cost de manteniment. L'article també tracta la responsabilitat administrativa dels dipòsits, les polítiques que els gestionen, la possibilitat de compartir dipòsits entre institucions i la procedència dels materials que contenen.

Testing low-altitude infrared digital photography from a mini-UAV to retrieve information for biological conservation

Satellite remote sensing imagery is used for forestry, conservation and environmental applications, but insufficient spatial resolution, and, in particular, unavailability of images at the precise timing required for a given application, often prevent achieving a fully operational stage. Airborne remote sensing has the advantage of custom-tuned sensors, resolution and timing, but its price prevents using it as a routine technique for the mentioned fields. Some Unmanned Aerial Vehicles might provide a “third way” solution as low-cost techniques for acquiring remotely sensed information, under close control of the end-user, albeit at the expense of lower quality instrumentation and instability. This report evaluates a light remote sensing system based on a remotely-controlled mini-UAV (ATMOS-3) equipped with a color infra-red camera (VEGCAM-1) designed and operated by CATUAV. We conducted a testing mission over a Mediterranean landscape dominated by an evergreen woodland of Aleppo pine (Pinus halepensis) and (Holm) oak (Quercus ilex) in the Montseny National Park (Catalonia, NE Spain). We took advantage of state-of-the-art ortho-rectified digital aerial imagery (acquired by the Institut Cartogràfic de Catalunya over the area during the previous year) and used it as quality reference. In particular, we paid attention to: 1) Operationality of flight and image acquisition according to a previously defined plan; 2) Radiometric and geometric quality of the images; and 3) Operational use of the images in the context of applications. We conclude that the system has achieved an operational stage regarding flight activities, although with meteorological limits set by wind speed and turbulence. Appropriate landing areas can be sometimes limiting also, but the system is able to land on small and relatively rough terrains such as patches of grassland or short matorral, and we have operated the UAV as far as 7 km from the control unit. Radiometric quality is sufficient for interactive analysis, but probably insufficient for automated processing. A forthcoming camera is supposed to greatly improve radiometric quality and consistency. Conventional GPS positioning through time synchronization provides coarse orientation of the images, with no roll information.

IQRray, a new method for Affymetrix microarray quality control, and the homologous organ conservation score, a new benchmark method for quality control metrics.

MOTIVATION: Microarray results accumulated in public repositories are widely reused in meta-analytical studies and secondary databases. The quality of the data obtained with this technology varies from experiment to experiment, and an efficient method for quality assessment is necessary to ensure their reliability. RESULTS: The lack of a good benchmark has hampered evaluation of existing methods for quality control. In this study, we propose a new independent quality metric that is based on evolutionary conservation of expression profiles. We show, using 11 large organ-specific datasets, that IQRray, a new quality metrics developed by us, exhibits the highest correlation with this reference metric, among 14 metrics tested. IQRray outperforms other methods in identification of poor quality arrays in datasets composed of arrays from many independent experiments. In contrast, the performance of methods designed for detecting outliers in a single experiment like Normalized Unscaled Standard Error and Relative Log Expression was low because of the inability of these methods to detect datasets containing only low-quality arrays and because the scores cannot be directly compared between experiments. AVAILABILITY AND IMPLEMENTATION: The R implementation of IQRray is available at: ftp://lausanne.isb-sib.ch/pub/databases/Bgee/general/IQRray.R. CONTACT: Marta.Rosikiewicz@unil.ch SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.