Dynamic simulation of regulatory networks using SQUAD.

BACKGROUND: The ambition of most molecular biologists is the understanding of the intricate network of molecular interactions that control biological systems. As scientists uncover the components and the connectivity of these networks, it becomes possible to study their dynamical behavior as a whole and discover what is the specific role of each of their components. Since the behavior of a network is by no means intuitive, it becomes necessary to use computational models to understand its behavior and to be able to make predictions about it. Unfortunately, most current computational models describe small networks due to the scarcity of kinetic data available. To overcome this problem, we previously published a methodology to convert a signaling network into a dynamical system, even in the total absence of kinetic information. In this paper we present a software implementation of such methodology. RESULTS: We developed SQUAD, a software for the dynamic simulation of signaling networks using the standardized qualitative dynamical systems approach. SQUAD converts the network into a discrete dynamical system, and it uses a binary decision diagram algorithm to identify all the steady states of the system. Then, the software creates a continuous dynamical system and localizes its steady states which are located near the steady states of the discrete system. The software permits to make simulations on the continuous system, allowing for the modification of several parameters. Importantly, SQUAD includes a framework for perturbing networks in a manner similar to what is performed in experimental laboratory protocols, for example by activating receptors or knocking out molecular components. Using this software we have been able to successfully reproduce the behavior of the regulatory network implicated in T-helper cell differentiation. CONCLUSION: The simulation of regulatory networks aims at predicting the behavior of a whole system when subject to stimuli, such as drugs, or determine the role of specific components within the network. The predictions can then be used to interpret and/or drive laboratory experiments. SQUAD provides a user-friendly graphical interface, accessible to both computational and experimental biologists for the fast qualitative simulation of large regulatory networks for which kinetic data is not necessarily available.

Ambulatory measurement of ankle kinetics for clinical applications.

This study aimed to design and validate the measurement of ankle kinetics (force, moment, and power) during consecutive gait cycles and in the field using an ambulatory system. An ambulatory system consisting of plantar pressure insole and inertial sensors (3D gyroscopes and 3D accelerometers) on foot and shank was used. To test this system, 12 patients and 10 healthy elderly subjects wore shoes embedding this system and walked many times across a gait lab including a force-plate surrounded by seven cameras considered as the reference system. Then, the participants walked two 50-meter trials where only the ambulatory system was used. Ankle force components and sagittal moment of ankle measured by ambulatory system showed correlation coefficient (R) and normalized RMS error (NRMSE) of more than 0.94 and less than 13% in comparison with the references system for both patients and healthy subjects. Transverse moment of ankle and ankle power showed R>0.85 and NRMSE<23%. These parameters also showed high repeatability (CMC>0.7). In contrast, the ankle coronal moment of ankle demonstrated high error and lower repeatability. Except for ankle coronal moment, the kinetic features obtained by the ambulatory system could distinguish the patients with ankle osteoarthritis from healthy subjects when measured in 50-meter trials. The proposed ambulatory system can be easily accessible in most clinics and could assess main ankle kinetics quantities with acceptable error and repeatability for clinical evaluations. This system is therefore suggested for field measurement in clinical applications.

Thymic selection generates a large T cell pool recognizing a self-peptide in humans.

The low frequency of self-peptide-specific T cells in the human preimmune repertoire has so far precluded their direct evaluation. Here, we report an unexpected high frequency of T cells specific for the self-antigen Melan-A/MART-1 in CD8 single-positive thymocytes from human histocompatibility leukocyte antigen-A2 healthy individuals, which is maintained in the peripheral blood of newborns and adults. Postthymic replicative history of Melan-A/MART-1-specific CD8 T cells was independently assessed by quantifying T cell receptor excision circles and telomere length ex vivo. We provide direct evidence that the large T cell pool specific for the self-antigen Melan-A/MART-1 is mostly generated by thymic output of a high number of precursors. This represents the only known naive self-peptide-specific T cell repertoire directly accessible in humans.

Anàlisi d'aplicacions del disseny de programació múltiple: una estimació de priorització en la planificació inicial i progressiva d'aquest enfocament

Atendre la planificació dels plans d’aula per a tot l’alumnat des d’un enfocament d’inclusió i atendre la planificació d’accés de cadascun i cadascuna de les alumnes a tot allò que es desenvoluparà a l’aula, són els propòsits del enfocament basat en el Disseny de Programacions Múltiples i Plans Educatius Individualitzats. Des d’aquest enfocament es planteja un procediment de planificacions “per versions” en el sentit que es considera que, inicialment, no es fa necessari preveure tots els detalls de l’activitat docent que es prepara, sinó el disposar d’uns primers esborranys que poden ser suficients i funcionals o que, en el cas de ser necessàries majors concrecions, aquestes es puguin anar introduint progressivament durant el mateix procés docent. El conèixer els canvis que es produiran en el moment de la implementació és l’objectiu d’aquest treball perquè tenim la convicció que si anticipem els possibles canvis que es produiran sabrem els components en els quals convé inicialment, planificar amb major intensitat i detall i quins són aquells altres components sobre els quals la intensitat de la planificació pot ser menys intensa i així facilitar la tasca dels professionals a l’hora de programar.

New Strategic Direction for Alcohol and Drugs (2006-2011) (Online Publication)

Executive Summary and Strategy Document (May 2006) The New Strategic Direction has a set of overarching long-term aims to: • Provide accessible and effective treatment and support for people who are consuming alcohol and/or using drugs in a potentially hazardous, harmful or dependent way. • Reduce the level, breadth and depth of alcohol and drug-related harm to users, their families and/or their carers and the wider community. • Increase awareness on all aspects of alcohol and drug-related harm in all settings and for all age groups. • Integrate those policies which contribute to the reduction of alcohol and drug-related harm into all Government Department strategies. • Develop a competent skilled workforce across all sectors that can respond to the complexities of alcohol and drug use and misuse. • Promote opportunities for those under the age of 18 years to develop appropriate skills, attitudes and behaviours to enable them to resist societal pressures to drink alcohol and/or use illicit drugs, with a particular emphasis on those identified as potentially vulnerable. • Reduce the availability of illicit drugs in Northern Ireland åÊ

New Strategic Direction for Alcohol and Drugs (2006-2011) Executive Summary

Executive Summary and Strategy Document (May 2006) The New Strategic Direction has a set of overarching long-term aims to: • Provide accessible and effective treatment and support for people who are consuming alcohol and/or using drugs in a potentially hazardous, harmful or dependent way. • Reduce the level, breadth and depth of alcohol and drug-related harm to users, their families and/or their carers and the wider community. • Increase awareness on all aspects of alcohol and drug-related harm in all settings and for all age groups. • Integrate those policies which contribute to the reduction of alcohol and drug-related harm into all Government Department strategies. • Develop a competent skilled workforce across all sectors that can respond to the complexities of alcohol and drug use and misuse. • Promote opportunities for those under the age of 18 years to develop appropriate skills, attitudes and behaviours to enable them to resist societal pressures to drink alcohol and/or use illicit drugs, with a particular emphasis on those identified as potentially vulnerable. • Reduce the availability of illicit drugs in Northern Ireland

Aplicatiu per a Cafeteria Andana

La finalitat del projecte és la realització d’una aplicació per gestionar l’activitat d’una cafeteria (Andana). El projecte consta de dues parts ben diferenciades: una part interna o Intranet, en la qual el propietari podrà portar un control del negoci i on podrà establir una interacció amb els clients, fet que ajudarà a millorar la gestió del negoci; i una part externa o web pública, accessible per a tothom. Per dur-lo a terme s'ha fet servir el gestor de continguts (CMS) Joomla.

Un visage m'appelle

Cet article discute l'hypothèse d'un lien entre l'émergence du thème du visage dans des textes ou des productions iconographiques provenant de diverses traditions religieuses et une expérience primordiale de contemplation d'un visage face à face. Pour dire la quête du transcendant, de ce qui n'est pas immédiatement accessible, l'être humain puiserait ainsi dans l'expérience d'une des premières grandes quêtes de tout humain : la recherche du face à face entre le nourrisson et sa mère qui se met peu à peu en place entre la naissance et l'âge de trois mois. C'est cette expérience qui serait élaborée par les textes parlant du désir de voir Dieu face à face et par les productions iconographiques représentant le visage de figures divines. Loin de répondre à un penchant régressif, cette reprise d'une des premières expériences enfantines serait l'expression d'un mouvement progressif : la référence à une victoire durement acquise durant les premiers mois de la vie pour parler d'un désir actuel de dépassement. Les pages qui suivent examinent successivement différents aspects de cette question.

Aplicació de gestió web per a la Fundació CIM

Mantenir la informació ordenada i accessible és essencial per qualsevol empresa avui en dia. Es desenvoluparà una aplicació en base web que serveixi per integrar la informació de l’empresa “Fundació CIM” respecte als clients, factures i ofertes (pressupostos). A més, el software permetrà també la creació i el manteniment de factures i albarans d’una manera ràpida i intuïtiva, millorant així el mètode actual basat en fulls de Microsoft Excel i Microsoft Access. S’establiran diferents rangs de permisos als diferents usuaris segons els seus rols.

Microautophagy of the nucleus coincides with a vacuolar diffusion barrier at nuclear-vacuolar junctions.

Nuclei bind yeast vacuoles via nucleus-vacuole (NV) junctions. Under nutrient restriction, NV junctions invaginate and release vesicles filled with nuclear material into vacuoles, resulting in piecemeal microautophagy of the nucleus (PMN). We show that the electrochemical gradient across the vacuolar membrane promotes invagination of NV junctions. Existing invaginations persist independently of the gradient, but final release of PMN vesicles requires again V-ATPase activity. We find that NV junctions form a diffusion barrier on the vacuolar membrane that excludes V-ATPase but is enriched in the VTC complex and accessible to other membrane-integral proteins. V-ATPase exclusion depends on the NV junction proteins Nvj1p,Vac8p, and the electrochemical gradient. It also depends on factors of lipid metabolism, such as the oxysterol binding protein Osh1p and the enoyl-CoA reductase Tsc13p, which are enriched in NV junctions, and on Lag1p and Fen1p. Our observations suggest that NV junctions form in two separable steps: Nvj1p and Vac8p suffice to establish contact between the two membranes. The electrochemical potential and lipid-modifying enzymes are needed to establish the vacuolar diffusion barrier, invaginate NV junctions, and form PMN vesicles.

Desarrollo y gestión de una página web educativa: Wolframio, un tipo con química

Nuestra Web tiene como eje central divulgar todo el material desarrollado en el Proyecto Wolframio, queriendo ser una herramienta sencilla y ágil para gestionar el material y ser más accesible para los usuarios. Para el desarrollo del proyecto se ha diseñado una arquitectura en la que conviven varias tecnologías y varios lenguajes de codificación y programación: HTML, PHP, MySQL, Java script, AJAX, JQUERY y CSS.

Health Statistics 2002

The four key principles guiding the development of the Health Strategy (2001): Quality and Fairness: A Health System for You are equity, people-centredness, quality and accountability. High quality statistical data are fundamental to the delivery of each of these. Relevant, accurate and accessible information should inform all health decisions. This includes information for the public as well as data required to enable evidence-based service delivery and evaluation, policy formulation and the measurement of health gain.This compendium of health statistics brings together data from a wide variety of sources on demography, health status and the delivery of health services. It provides a broad overview of health in Ireland as well as serving as a resource and reference for those interested in particular aspects of health and the health services. Download document here

Dietary habits of the Irish population: results from SLÃÅN Annual Report 2003

Dietary habits of the Irish population: results from SLÃÂÅN Annual Report 2003 The National Nutritional Surveillance Centre was established in 1992, in the Department of Health Promotion, National University of Ireland,Galway. In 2003 the Centre moved to the Department of Public Health Medicine and Epidemiology, University College Dublin. Its main functions are to provide nutrition-related information to relevant organizations in an accessible form and to monitor trends in health status in relation to food supply, availability and consumption. Click here to download PDF 1.8mb

Analysis of functional and anatomical success following endonasal dacryocystorhinostomy

RésuméLes sténoses des voies lacrymales sont fréquentes surtout chez les patients âgés et provoquent en général un epiphora avec parfois des dacryocystites aiguës ou chroniques. La dacryocystorhinostomie par voie externe (DCREX) a été la technique de choix pour traiter les sténoses post-canaliculaires au XXe siècle. Avec l'avènement de l'endoscopie nasale, l'abord endonasal est devenu facilement accessible et depuis une dizaine d'années, la dacryocystorhinostomie par voie endonasale (DCREN) est en train de supplanter la DCREX dans la majorité des cas.Le but de ce travail est de déterminer les étiologies des sténoses des voies lacrimales, d'évaluer le taux de succès et les complications de la DCREN et de détailler les gestes associés peropératoires.Cette étude rétrospective porte sur 98 patients ayant subi 104 DCREN entre janvier 1994 et février 2006. 78 patients (53 femmes et 25 hommes) présentant 84 sténoses post- canaliculaires remplissent les critères d'inclusion de l'étude. L'âge moyen est de 59 ans (4 - 89 ans).Les résultats obtenus montrent un taux de succès fonctionnel de 94.9% après une première intervention (59/84 DCREN) et de 63.6% pour les DCREN secondaires qui nous ont été référées après d'autres interventions des voies lacrymales (25/84 DCREN). Le suivi postopératoire est de 36,8 mois (12-77 mois). On dénombre 61 gestes rhino-sinusaux associés à la DCREN. Les complications per- et postopératoires sont rares, essentiellement liées aux drains bicanaliculaires. Une étiologie n'a été retrouvée que dans 28% des cas.En conclusion, la DCREN donne d'excellents résultats et peu de complications. En raison des nombreux avantages par rapport à la voie externe et la possibilité du traitement simultané de la pathologie ORL parfois associée, la DCREN est devenue le traitement de premier choix pour les sténoses postcanaliculaires. Le principal défi, quelque soit le type de DCR, est de poser la bonne indication opératoire et en cas d'échec opératoire savoir méticuleusement analyser ses causes

Portal web per la gestió i recuperació de residus d'una PIME

Aquest projecte tracta de fer un portal web vistós i amigable per a una empresa gestora de residus de nom Distiller S.A. L’empresa està a punt d’expandir-se pel territori nacional i vol començar a captar nous mercats. Amb aquesta intenció s’ha realitzat un projecte que diferencia ben clarament el que vol el client: una part pública i una part privada o administrable. La part pública conté suficient informació per a que qualsevol visitant estigui al dia respecte a l’activitat de l’empresa. La part privada és accessible per a tot usuari que es vulgui registrar i vol solucionar el problema de poc contacte amb el Client i agilitzar la forma de comunicar-se entre departaments.