Condiciones hidroquímicas del mar peruano a comienzos de otoño 1997. Crucero BIC Humboldt 9704

Describe las condiciones hidroquímicas del mar peruano a comienzos de otoño 1997, efectuado en el BIC Humboldt 9704, encontrando en la superfie del mar las concentraciones de nutrientes (oxígeno, fosfatos, silicatos, nitratos y nititos) fueron bajas afuera de las cinco millas naúticas debido a las influencia de las aguas ecuatoriales superficiales y a las aguas subtropicales superficiales, masas de aguas caracterizadas por ser pobres en nutrientes y cuya presencia se debe a las condiciones anómalas de un año cálido ENOS.

Informe preliminar del crucero de invierno 1965 (Mácora - Morro Sama)

Describe información acerca del desove de la anchoveta mediante la recolección de planctoncon red hansen. Así mimso, presenta investigaciones sobre la presencia de cardúmenes de peces por medio del eco-sonda y sonar, observaciones de aves y mamiferos marinos.

Causas posibles de la drástica disminución de la longitud media de la merluza peruana en 1992

La drástica disminución de la longitud media de la merluza en 1992 fue hasta cierto punto inesperada para los biólogos pesqueros peruanos, acostumbrados a manejar esta población como un stock unitario controlando el rendimiento y la longitud mínima en las capturas. Durante toda la década de los años ochenta, el esfuerzo pesquero no fue muy alto y afectó principalmente a los grupos de edades IV+. Menos del 10% de los desembarques fueron de tallas menores a la longitud media de desove (35 cm). Por esto, la gran ocurrencia de tallas pequeñas de merluza a partir de marzo de 1992 en las capturas de todas las flotas dedicadas a esta especie, parecía deberse a las condiciones oceanográficas, ya que un evento El Niño Oscilación Sur (ENOS) se estaba desarrollando. Sin embargo, igual que en anteriores ENOS, se hubiera esperado un cambio de sitio de toda la población hacia el sur y lejos de la costa. Esto significaría que las merluzas jóvenes de tamaño mediano estarían mas al sur fuera del alcance de la flota de Paita. Contrario a lo esperado, durante El Niño 1991-93, debido a una intrusión de aguas oceánicas subtropicales, las merluzas grandes migraron hacia el norte. Mientras que El Niño podría haber actuado como un disparador, la causa fundamental de los cambios estructurales en la población fue la desaparición de la sardina como especie de presa principal para las merluzas grandes a partir de 1987, y la falta de pequeños Sciaenidae (bereche) durante El Niño, para las merluzas de tamaño medio. Lo primero podría deberse al alto esfuerzo pesquero sobre la sardina, en conjunto, probablemente, con una presión depredadora alta de una población sana de merluza a partir de mediados de la década de los años 80. Estudios futuros deben incluir las relaciones entre predador y presa en el ecosistema. Estas relaciones, que se desarrollaron durante largos períodos, probablemente soportan la estabilidad del sistema, y las pesquerías, que actúan como un fuerte depredador, deben ser incluidas en un modelo multiespecífico.

Impacto de la variación oceanográfica estacional e interanual sobre los ensambles de microfitoplancton, mesozooplancton, ictioplancton y macrozoobentos de dos áreas costeras del norte del Perú entre 1994 y 2002

Se ha analizado la variación oceanográfica y las respuestas de los ensambles de microfitoplancton, mesozooplancton, ictioplancton y macrobentos en las áreas costeras (<20 mn) frente a Paita (05°S) y a San José (06°45’S) durante el período 1994 a 2002. La variación oceanográfica presentó componentes a varias escalas temporales, moduladas por el ciclo ENOS, la propagación de ondas atrapadas hacia la costa y la intensificación estacional del afloramiento costero. La sucesión de los eventos El Niño (EN) 1997-98 y La Niña (LN) 1998-99 presentó características bien diferenciadas en las condiciones físicas superficiales y en la estructura vertical de la columna de agua. El evento EN 1997-98 fue antecedido por el impacto de una onda Kelvin en febrero de 1997, provocando anomalías positivas de temperatura, profundización de la estructura vertical y presencia de algunos indicadores de masas de agua cálida en el plancton, entre febrero y abril de 1997. Estas condiciones se mantuvieron, o se acentuaron, hasta el final del evento. El evento LN 1998-99 se caracterizó por la ausencia de masas de agua cálidas cerca de la costa y la dominancia de aguas costeras frías, la no propagación de ondas Kelvin, la posición somera de aguas frías y pobres en oxígeno, así como la hegemonía de indicadores planctónicos de aguas costeras frías. Estacionalmente, durante otoño-invierno tendieron a desarrollarse condiciones subsuperficiales más oxigenadas (una oxiclina más profunda), mientras que durante el verano las condiciones tendieron a ser menos oxigenadas (hipóxicas, con una oxiclina más somera). Tal patrón no responde a la estacionalidad del afloramiento costero y más bien coincide con la dinámica esperada de la Extensión Sur de la Corriente de Cromwell (ESCC). En general, se determinó un muy buen ajuste de los rangos de tolerancia de algunos organismos planctónicos a las características de las masas de agua dominantes en la capa superficial: Aguas Costeras Frías (ACF), Aguas Ecuatoriales Superficiales (AES) y Aguas Subtropicales Superficiales (ASS), validando la utilidad de estas especies como eficaces indicadores biológicos de masas de agua. Se determinaron los rangos de tolerancia en temperatura y salinidad de los dinoflagelados Protoperidinium obtusum (ACF), Ceratium breve (AES) y Ceratium praelongum (ASS), así como de los copépodos Centropages brachiatus (ACF), Eucalanus inermis (ACF), Centropages furcatus (AES) y Mecynocera clausi (ASS), entre otras. Los indicadores presentaron variaciones en su distribución a lo largo del período estudiado. Los indicadores de ACF fueron detectados durante la mayor parte del estudio, pero ocurrieron hechos sobresalientes durante EN 1997-98: (a) entre los dinoflagelados, Goniodoma polyedricum alcanzó su mayor frecuencia en San José y Pyrocystis lunula frente a Paita; (b) el copépodo Centropages furcatus (AES) incrementó su abundancia frente a Paita y fue hallado frente a San José; (c) se evidenciaron cambios en la composición específica del plancton, detectándose el ingreso de especies no residentes y aumento de la riqueza de especies; (d) las biomasas fitoplanctónica y zooplanctónica tendieron a mostrar una relación directa bajo condiciones neutras del ENOS; sin embargo, al ocurrir variaciones ambientales (EN y LN) presentaron una tendencia contraria; (e) las comunidades del macrobentos en estas dos áreas, mostraron disminuciones significativas en los parámetros comunitarios, contrastando con la respuesta de la macrofauna bentónica frente a la costa central. Este comportamiento frente a Paita pudo obedecer a la alteración del ambiente sedimentario por las muy altas des- cargas del río Chira; y frente a San José, pudo resultar de la disminución local de la producción primaria y del flujo de alimento particulado al bentos. Se sugiere que la disponibilidad de alimento, influenciada por los procesos erosivos sobre el fondo, marca una diferencia clave en la dinámica de estas comunidades en relación a las registradas frente a la costa central, ya que estas últimas habitan en áreas donde pre- dominan los procesos deposicionales y la acumulación de materia orgánica en los sedimentos. Los anfípodos gamáridos, especialmente de la familia Ampeliscidae, mostraron ser más sensibles a los cambios ambientales en el fondo (interfase sedimento-agua) al disminuir significativamente sus poblaciones, en ambas áreas costeras.

Phylogeography of Mabuya maculilabris (Reptilia) from São Tomé Island (Gulf of Guinea) inferred from mtDNA sequences

The pattern of genetic variation of the lizard Mabuya maculilabris from São Tomé Island (Gulf of Guinea) was investigated using a combination of three mitochondrial DNA gene fragments. Forty-eight haplotypes were recovered among 66 individuals covering the whole island. The genealogy inferred from the most parsimonious network of haplotypes allows us to detect two main and long branches departing from the putative group of oldest haplotypes. The tips of these branches exhibit star-like phylogenies, which may indicate of recently expanded populations, most probably from a small number of founders. A nested clade analysis suggests a complex pattern of past events that gave rise to the extant geographical pattern found in the haplotype distribution: past and allopatric fragmentation, range expansion, restricted gene Xow and long-distance dispersal. These results are consistent with the complex geological history of the island where important volcanic activity with extensive lava Xows has occurred during several periods. Mismatch- distribution analysis and AMOVA also support these conclusions. Substantial genetic structuring among these lizards was detected as well as high levels of diVerentiation between the southern edge populations (particularly those from the Rolas Islet) and the remaining ones. However, variation is low relative to the geological age of the island. Our results indicate that patterns of variation observed in reptiles in other oceanic islands are not indicative of those observed in the islands of the Gulf of Guinea.

Distinct genetic structure in populations of Chrysoperla externa (Hagen) (Neuroptera, Chrysopidae) shown by genetic markers ISSR and COI gene

Distinct genetic structure in populations of Chrysoperla externa (Hagen) (Neuroptera, Chrysopidae) shown by genetic markers ISSR and COI gene. Green lacewings are generalist predators, and the species Chrysoperla externa presents a great potential for use in biological control of agricultural pests due to its high predation and reproduction capacities, as well as its easy mass rearing in the laboratory. The adaptive success of a species is related to genetic variability, so that population genetic studies are extremely important in order to maximize success of the biological control. Thus, the present study used nuclear (Inter Simple Sequence Repeat - ISSR) and mitochondrial (Cytochrome Oxidase I - COI) molecular markers to estimate the genetic variability of 12 populations in the São Paulo State, Brazil, as well as the genetic relationships between populations. High levels of genetic diversity were observed for both markers, and the highest values of genetic diversity appear associated with municipalities that have the greatest areas of native vegetation. There was high haplotype sharing, and there was no correlation between the markers and the geographic distribution of the populations. The AMOVA indicated absence of genetic structure for the COI gene, suggesting that the sampled areas formed a single population unit. However, the great genetic differentiation among populations showed by ISSR demonstrates that these have been under differentiation after their expansion or may also reflect distinct dispersal behavior between males and females.

Impact of recombination on genetic variability within Staphylococcus aureus clonal complexes.

The population structure of Staphylococcus aureus is generally described as highly clonal and is consequently subdivided into several clonal complexes (CCs). Recent data suggested that recombination might occur more frequently within than among CCs. To test this hypothesis as well as to understand how genetic diversity is created in S. aureus, we analyzed a collection of 182 isolates with MLST and five highly variable core adhesion (ADH) genes. As expected the polymorphism of ADH genes was higher than MLST genes. However both categories of genes showed low within CCs diversity with a dominant haplotype and its single nucleotide variants. Several recombination events were detected but none involved intra-CC recombination. This did not confirm the hypothesis of higher recombination within CCs. Nevertheless, molecular analyses of variance indicated that these few recombination events have a significant impact on the genetic diversity within CCs. In addition, although most ADH genes were under purifying selection, signs of positive selection associated with a recombinant group were detected. These data highlight the importance of recombination on the evolution of the highly clonal S. aureus and suggest that recombination when combined with demographic mechanisms as well as selection might favor the rapid creation of new clonal complexes.

Variabilidad temporal de baja frecuencia en el ecosistema de la Corriente Humboldt frente a Perú

La variabilidad temporal de baja frecuencia en Ecosistema de la Corriente Humboldt (ECH) frente a Perú se caracteriza por cambios abruptos en la dominancia de anchoveta y sardinas, así como por drásticas disminuciones en los desembarques de anchoveta durante la fase calidad del ciclo El Niño Oscilación del Sur (ENOS) (e.g. 1972-73 y 1982 – 1983). Sumado a esta características, estudios recientes sugieren que existen señales de largo plazo en el ECH frente a Perú (e. G. Tendencia decreciente de la abundancia de aves guaneras y volúmenes de mesozooplancton). Sin embargo, respuestas biológicas a tales señales físicas de largo plazo son crípticas o poco conocidas. En este estudio se analiza por una parte la variabilidad internual en las variables físicas y biológicas asociadas con El Niño. Esta señal se expresó en el Índice de oscilación Peruano (IOP), basado en las temperaturas superficiales del mar (TSM), en la variabilidad del viento del área EL NIÑO 3,4 y en el Índice de Oscilación del Sur (IOS), basado en la presión superficial del mar.

RANTES/CCL5 and risk for coronary events: results from the MONICA/KORA Augsburg case-cohort, Athero-Express and CARDIoGRAM studies.

BACKGROUND: The chemokine RANTES (regulated on activation, normal T-cell expressed and secreted)/CCL5 is involved in the pathogenesis of cardiovascular disease in mice, whereas less is known in humans. We hypothesised that its relevance for atherosclerosis should be reflected by associations between CCL5 gene variants, RANTES serum concentrations and protein levels in atherosclerotic plaques and risk for coronary events. METHODS AND FINDINGS: We conducted a case-cohort study within the population-based MONICA/KORA Augsburg studies. Baseline RANTES serum levels were measured in 363 individuals with incident coronary events and 1,908 non-cases (mean follow-up: 10.2±4.8 years). Cox proportional hazard models adjusting for age, sex, body mass index, metabolic factors and lifestyle factors revealed no significant association between RANTES and incident coronary events (HR [95% CI] for increasing RANTES tertiles 1.0, 1.03 [0.75-1.42] and 1.11 [0.81-1.54]). None of six CCL5 single nucleotide polymorphisms and no common haplotype showed significant associations with coronary events. Also in the CARDIoGRAM study (>22,000 cases, >60,000 controls), none of these CCL5 SNPs was significantly associated with coronary artery disease. In the prospective Athero-Express biobank study, RANTES plaque levels were measured in 606 atherosclerotic lesions from patients who underwent carotid endarterectomy. RANTES content in atherosclerotic plaques was positively associated with macrophage infiltration and inversely associated with plaque calcification. However, there was no significant association between RANTES content in plaques and risk for coronary events (mean follow-up 2.8±0.8 years). CONCLUSIONS: High RANTES plaque levels were associated with an unstable plaque phenotype. However, the absence of associations between (i) RANTES serum levels, (ii) CCL5 genotypes and (iii) RANTES content in carotid plaques and either coronary artery disease or incident coronary events in our cohorts suggests that RANTES may not be a novel coronary risk biomarker. However, the potential relevance of RANTES levels in platelet-poor plasma needs to be investigated in further studies.

Transcript profiling suggests that differential metabolic adaptation of mice to a high fat diet is associated with changes in liver to muscle lipid fluxes.

Genetically homogenous C57Bl/6 mice display differential metabolic adaptation when fed a high fat diet for 9 months. Most become obese and diabetic, but a significant fraction remains lean and diabetic or lean and non-diabetic. Here, we performed microarray analysis of "metabolic" transcripts expressed in liver and hindlimb muscles to evaluate: (i) whether expressed transcript patterns could indicate changes in metabolic pathways associated with the different phenotypes, (ii) how these changes differed from the early metabolic adaptation to short term high fat feeding, and (iii) whether gene classifiers could be established that were characteristic of each metabolic phenotype. Our data indicate that obesity/diabetes was associated with preserved hepatic lipogenic gene expression and increased plasma levels of very low density lipoprotein and, in muscle, with an increase in lipoprotein lipase gene expression. This suggests increased muscle fatty acid uptake, which may favor insulin resistance. In contrast, the lean mice showed a strong reduction in the expression of hepatic lipogenic genes, in particular of Scd-1, a gene linked to sensitivity to diet-induced obesity; the lean and non-diabetic mice presented an additional increased expression of eNos in liver. After 1 week of high fat feeding the liver gene expression pattern was distinct from that seen at 9 months in any of the three mouse groups, thus indicating progressive establishment of the different phenotypes. Strikingly, development of the obese phenotype involved re-expression of Scd-1 and other lipogenic genes. Finally, gene classifiers could be established that were characteristic of each metabolic phenotype. Together, these data suggest that epigenetic mechanisms influence gene expression patterns and metabolic fates.

Autosomal-dominant distal myopathy associated with a recurrent missense mutation in the gene encoding the nuclear matrix protein, matrin 3.

Distal myopathies represent a heterogeneous group of inherited skeletal muscle disorders. One type of adult-onset, progressive autosomal-dominant distal myopathy, frequently associated with dysphagia and dysphonia (vocal cord and pharyngeal weakness with distal myopathy [VCPDM]), has been mapped to chromosome 5q31 in a North American pedigree. Here, we report the identification of a second large VCPDM family of Bulgarian descent and fine mapping of the critical interval. Sequencing of positional candidate genes revealed precisely the same nonconservative S85C missense mutation affecting an interspecies conserved residue in the MATR3 gene in both families. MATR3 is expressed in skeletal muscle and encodes matrin 3, a component of the nuclear matrix, which is a proteinaceous network that extends throughout the nucleus. Different disease related haplotype signatures in the two families provided evidence that two independent mutational events at the same position in MATR3 cause VCPDM. Our data establish proof of principle that the nuclear matrix is crucial for normal skeletal muscle structure and function and put VCPDM on the growing list of monogenic disorders associated with the nuclear proteome.

Genetic differentiation of continental and island populations of Bombus terrestris (Hymenoptera: Apidae) in Europe.

Ten microsatellite loci and a partial sequence of the COII mitochondrial gene were used to investigate genetic differentiation in B. terrestris, a bumble bee of interest for its high-value crop pollination. The analysis included eight populations from the European continent, five from Mediterranean islands (six subspecies altogether) and one from Tenerife (initially described as a colour form of B. terrestris but recently considered as a separate species, B. canariensis). Eight of the 10 microsatellite loci displayed high levels of polymorphism in most populations. In B. terrestris populations, the total number of alleles detected per polymorphic locus ranged from 3 to 16, with observed allelic diversity from 3.8 +/- 0.5 to 6.5 +/- 1.4 and average calculated heterozygosities from 0.41 +/- 0.09 to 0.65 +/- 0.07. B. canariensis showed a significantly lower average calculated heterozygosity (0.12 +/- 0.08) and observed allelic diversity (1.5 +/- 0.04) as compared to both continental and island populations of B. terrestris. No significant differentiation was found among populations of B. terrestris from the European continent. In contrast, island populations were all significantly and most of them strongly differentiated from continental populations. B. terrestris mitochondrial DNA is characterized by a low nucleotide diversity: 0.18% +/- 0.07%, 0.20% +/- 0.04% and 0.27% +/- 0.04% for the continental populations, the island populations and all populations together, respectively. The only haplotype found in the Tenerife population differs by a single nucleotide substitution from the most common continental haplotype of B. terrestris. This situation, identical to that of Tyrrhenian islands populations and quite different from that of B. lucorum (15 substitutions between terrestris and lucorum mtDNA) casts doubts on the species status of B. canariensis. The large genetic distance between the Tenerife and B. terrestris populations estimated from microsatellite data result, most probably, from a severe bottleneck in the Canary island population. Microsatellite and mitochondrial DNA data call for the protection of the island populations of B. terrestris against importation of bumble bees of foreign origin which are used as crop pollinators.

Estimating the net contribution of interleukin-28B variation to spontaneous hepatitis C virus clearance.

The identification of associations between interleukin-28B (IL-28B) variants and the spontaneous clearance of hepatitis C virus (HCV) raises the issues of causality and the net contribution of host genetics to the trait. To estimate more precisely the net effect of IL-28B genetic variation on HCV clearance, we optimized genotyping and compared the host contributions in multiple- and single-source cohorts to control for viral and demographic effects. The analysis included individuals with chronic or spontaneously cleared HCV infections from a multiple-source cohort (n = 389) and a single-source cohort (n = 71). We performed detailed genotyping in the coding region of IL-28B and searched for copy number variations to identify the genetic variant or haplotype carrying the strongest association with viral clearance. This analysis was used to compare the effects of IL-28B variation in the two cohorts. Haplotypes characterized by carriage of the major alleles at IL-28B single-nucleotide polymorphisms (SNPs) were highly overrepresented in individuals with spontaneous clearance versus those with chronic HCV infections (66.1% versus 38.6%, P = 6 × 10(-9) ). The odds ratios for clearance were 2.1 [95% confidence interval (CI) = 1.6-3.0] and 3.9 (95% CI = 1.5-10.2) in the multiple- and single-source cohorts, respectively. Protective haplotypes were in perfect linkage (r(2) = 1.0) with a nonsynonymous coding variant (rs8103142). Copy number variants were not detected. We identified IL-28B haplotypes highly predictive of spontaneous HCV clearance. The high linkage disequilibrium between IL-28B SNPs indicates that association studies need to be complemented by functional experiments to identify single causal variants. The point estimate for the genetic effect was higher in the single-source cohort, which was used to effectively control for viral diversity, sex, and coinfections and, therefore, offered a precise estimate of the net host genetic contribution.

Mutation hot spots in 5q31-linked corneal dystrophies.

Mutations in the BIGH3 gene on chromosome 5q31 cause four distinct autosomal dominant diseases of the human cornea: granular (Groenouw type I), Reis-Bücklers, lattice type I, and Avellino corneal dystrophies. All four diseases are characterized by both progressive accumulation of corneal deposits and eventual loss of vision. We have identified a specific recurrent missense mutation for each type of dystrophy, in 10 independently ascertained families. Genotype analysis with microsatellite markers surrounding the BIGH3 locus was performed in these 10 families and in 5 families reported previously. The affected haplotype could be determined in 10 of the 15 families and was different in each family. These data indicate that R555W, R124C, and R124H mutations occurred independently in several ethnic groups and that these mutations do not reflect a putative founder effect. Furthermore, this study confirms the specific importance of the R124 and R555 amino acids in the pathogenesis of autosomal dominant corneal dystrophies linked to 5q.

Polymorphisms in TLR2 are associated with increased viral shedding and lesional rate in patients with genital herpes simplex virus Type 2 infection.

Clinical and virologic manifestations of genital herpes simplex virus type 2 (HSV-2) infection vary widely. We examined frequencies of single-nucleotide polymorphisms (SNPs) in Toll-like receptors (TLRs) 2, 3, 4, and 9 in a prospective cohort of 128 HSV-2-infected persons whose viral shedding and lesion frequency was measured by daily sampling from genital secretions. Two TLR2 haplotypes (2 and 4) were associated with increased lesional (P=.008 and P=.03) and shedding (P=.02 and P=.001) rates. An SNP in haplotype 2 (-15607A/G) was also associated with shedding (P=.01) and lesional (P=.008) rates. Polymorphisms in TLR2 may be in part responsible for differences in the severity of HSV-2 infection.