Analysis of Protein Turnover by Quantitative SNAP-Based Pulse-Chase Imaging

Assessment of protein dynamics in living cells is crucial for understanding their biological properties and functions. The SNAP-tag, a self labeling suicide enzyme, presents a tool with unique features that can be adopted for determining protein dynamics in living cells. Here we present detailed protocols for the use of SNAP in fluorescent pulse-chase and quench-chase-pulse experiments. These time-slicing methods provide powerful tools to assay and quantify the fate and turnover rate of proteins of different ages. We cover advantages and pitfalls of SNAP-tagging in fixed- and live-cell studies and evaluate the recently developed fast-acting SNAPf variant. In addition, to facilitate the analysis of protein turnover datasets, we present an automated algorithm for spot recognition and quantification.

A Comprehensive Discussion of HMBC Pulse Sequences: 4. Establishing Two-Bond Correlations from HMBC and Related Experiments

The utility of the HMBC experiment for structure elucidation is unquestionable, but the nature of the coupling pathways leading to correlations in an HMBC experiment creates the potential for misinterpretation. This misinterpretation potential is intimately linked to the size of the long-range heteronuclear couplings involved, and may become troublesome in those cases of a particularly strong 2JCH correlation that might be mistaken for a 3JCH correlation or a 4JCH correlation of appreciable strength that could be mistaken for a weaker 3JCH correlation. To address these potential avenues of confusion, work from several laboratories has been focused on the development of what might be considered “coupling pathway edited” long-range heteronuclear correlation experiments that are derived from or related to the HMBC experiment. The first example of an effort to address the problems associated with correlation path length was seen in the heteronucleus-detected XCORFE experiment described by Reynolds and co-workers that predated the development of the HMBC experiment. Proton-detected analogs of the HMBC experiment intended to differentiate 2JCH correlations from nJCH correlations where n = 3, 4, include the 2J,3J-HMBC, HMBC-RELAY, H2BC, edited-HMBC, and HAT H2BC experiments. The principles underlying the critical components of each of these experiments are discussed and experimental verification of the results that can be obtained using model compounds are shown. This contribution concludes with a brief discussion of the 1,1-ADEQUATE experiments that provide an alternative means of identifying adjacent protonated and non-protonated carbon correlations by exploiting 1JCC correlations at natural abundance.

(Table 2) Delta 14C record of sediment core Pulse-32_SMB

The D14C of surface water dissolved inorganic carbon (DIC) in the Southern California Bight was compared to D14C as recorded by the sterols in Santa Monica and Santa Barbara Basin sediments. All of the C26, C27, C28, and C29 sterols as well as dinosterol had 14C concentrations equal to surface water DIC, indicating that all of the major sterols were derived from phytoplanktonic production. There is no detectable terrestrial component. Their tracer capability was confirmed by comparing the "bomb 14C"-derived change in surface water D14CDIC with the change in D14Csterol. The "prebomb" D14CDIC was -82 per mil, and prebomb sterols averaged -75±19 per mil. The D14C value in 1996 was +71 per mil. Eighteen measurements representing eight different sterols from the sediment-water interface of both Santa Monica and Santa Barbara Basins averaged +62±23 per mil. When three of these values were eliminated because of suspected contamination, the remaining data averaged +71 ±12 per mil. The entire compound class could serve as an excellent proxy for the 14C concentration of ocean surface waters.

Susceptibility measurements at Gubbio sections

The complex interplay between extraterrestrial events and earth-bound processes that triggered one of the greatest biological crises of the Phanerozoic requires a high resolution timescale. Detailed magnetic susceptibility measurements at the Contessa Highway and Bottaccione sections (Italy) span the Cretaceous-Paleogene boundary and reveal clear orbital signatures in the sedimentary record. Identification of precession and 405 kyr eccentricity cycles allows an estimate of 324+/-40 kyr for the duration of the Maastrichtian part of Chron C29r. We present in the same high resolution time frame sites in Spain and the North and South Atlantic and bio-horizons, biotic changes, stable isotopic excursions and the decrease in Osmium isotopes recorded in these sections. The onset of 187 Os/ 188 Os decrease coincides with the d13 C negative excursion K-PgE1, thus suggesting a first pulse in Deccan volcanism at 66.64 Ma. The K-PgE3 d13 C negative excursion is possibly the expression of a second pulse at 66.26 Ma. Late Maastrichtian d13 C negative excursions are of low intensity and span durations of one to two eccentricity cycles, whereas early Danian excursions are brief (about 30 kyr) and acute. In Biotic response to late Maastrichtian perturbations occurred with a delay of ca. 200 kyr after the beginning of K-PgE1 shortly before K-PgE3. The biotic perturbation could be thus either a delayed response to K-PgE1, or a direct response to K-PgE3, and possibly, a threshold response to the stepwise buildup of CO2 atmospheric injections. No delay is evident in response to early Danian hyperthermal events. These differences suggest that short-lived, volcanically-derived environmental perturbations were buffered within the stable late Maastrichtian oceanic realm whereas they were amplified by the more sensitive and highly disturbed early Danian oceanic ecosystem.

Fast neutron pulse reactors and fast neutron critical assemblies : a literature search /

"Reactor Technology."

A semi-automated pulse-echo ultrasonic system for inspecting tires. Interim report.

National Highway Traffic Safety Administration, Office of Research and Development, Washington, D.C.

Analog computation with random pulse sequences.

Vita.

A display for demonstrating analog computations with random pulse sequences,

"Supported in part by the Office of Naval Research under Contract N000 14-67-A-0305-0007."

The process of pulse sintering /

"Contract AT-30-1-Gen-366."

Single-pulse shock tube studies of the kinetics of the reaction N + O [arrow right over arrow left (reversible reaction)] 2 NO between 2000-3000⁰ K,

At head of title: Combustion Dynamics Division, Air Force Office of Scientific Research, ARDC, Washington, D. C., File no. AF 18(600)-1332.

A study of nanosecond pulse techniques in radar transmission.

Stamped at head of title: RADC-TR-61-247.

The general practice of physic : extracted chiefly from the writings of the most celebrated practical physicians, and the Medical Essays, Transactions, Journels, and Literary Correspondence of the Learned Societies in Europe, to which is prefixed, an introduction, containing: The Distinction of Similar Diseases, The Use of the Non Naturals, An Account of the Pulse, The Consent of the Nervous Parts, and a Sketch of the Animal Oeconomy /

Mode of access: Internet.

The pulse of progress : including a sketch of Jewish history /

"List of books and articles by Ellsworth Huntington from which much of the material in this book has been drawn" : p. 321-324.

Pulse in verbal rhythm.

"Reprinted from Poet lore, June, 1905".

The general practice of physic : extracted chiefly from the writings of the most celebrated practical physicians, and the medical essays, transactions, journals, and literary correspondence of the learned societies in Europe : to which is prefixed, an introduction, containing the distinction of similar diseases, the use of the non-naturals, an account of the pulse, the consent of the nervous parts, and a sketch of the animal œconomy /

Mode of access: Internet.