Progetto e implementazione di software di segmentazione assistita di immagini mediche e predizione di biomarkers

La segmentazione prevede la partizione di un'immagine in aree strutturalmente o semanticamente coerenti. Nell'imaging medico, è utilizzata per identificare, contornandole, Regioni di Interesse (ROI) clinico, quali lesioni tumorali, oggetto di approfondimento tramite analisi semiautomatiche e automatiche, o bersaglio di trattamenti localizzati. La segmentazione di lesioni tumorali, assistita o automatica, consiste nell’individuazione di pixel o voxel, in immagini o volumi, appartenenti al tumore. La tecnica assistita prevede che il medico disegni la ROI, mentre quella automatica è svolta da software addestrati, tra cui i sistemi Computer Aided Detection (CAD). Mediante tecniche di visione artificiale, dalle ROI si estraggono caratteristiche numeriche, feature, con valore diagnostico, predittivo, o prognostico. L’obiettivo di questa Tesi è progettare e sviluppare un software di segmentazione assistita che permetta al medico di disegnare in modo semplice ed efficace una o più ROI in maniera organizzata e strutturata per futura elaborazione ed analisi, nonché visualizzazione. Partendo da Aliza, applicativo open-source, visualizzatore di esami radiologici in formato DICOM, è stata estesa l’interfaccia grafica per gestire disegno, organizzazione e memorizzazione automatica delle ROI. Inoltre, è stata implementata una procedura automatica di elaborazione ed analisi di ROI disegnate su lesioni tumorali prostatiche, per predire, di ognuna, la probabilità di cancro clinicamente non-significativo e significativo (con prognosi peggiore). Per tale scopo, è stato addestrato un classificatore lineare basato su Support Vector Machine, su una popolazione di 89 pazienti con 117 lesioni (56 clinicamente significative), ottenendo, in test, accuratezza = 77%, sensibilità = 86% e specificità = 69%. Il sistema sviluppato assiste il radiologo, fornendo una seconda opinione, non vincolante, adiuvante nella definizione del quadro clinico e della prognosi, nonché delle scelte terapeutiche.

Implementazione di banca dati di immagini per lo sviluppo di algoritmi per la navigazione aerea automatica

Lo scopo di questo studio è l’implementazione di un sistema di navigazione autonomo in grado di calcolare la traiettoria di un mezzo aereo, noti che siano a priori dei punti di posizione detti waypoint. A partire da questa traiettoria, è possibile ottenere la sua rappresentazione in un codice che mette a disposizione immagini satellitari e ricavare le viste del terreno sorvolato in una serie di punti calcolati, in modo da garantire in ogni sequenza la presenza di elementi comuni rispetto a quella precedente. Lo scopo della realizzazione di questa banca dati è rendere possibili futuri sviluppi di algoritmi di navigazione basati su deep learning e reti neurali. Le immagini virtuali ottenute del terreno saranno in futuro applicate alla navigazione autonoma per agricoltura di precisione mediante droni. Per lo studio condotto è stato simulato un generico velivolo, con o senza pilota, dotato di una videocamera fissata su una sospensione cardanica a tre assi (gimbal). La tesi, dunque, introduce ai più comuni metodi di determinazione della posizione dei velivoli e alle più recenti soluzioni basate su algoritmi di Deep Learning e sistemi vision-based con reti neurali e segue in un approfondimento sul metodo di conversione degli angoli e sulla teoria matematica che ne sta alla base. Successivamente, analizza nel dettaglio il processo di simulazione della navigazione autonoma e della determinazione della traiettoria in ambiente software Matlab e Simulink, procedendo nell’analisi di alcuni casi di studio in ambienti realistici. L’elaborato si conclude con un breve riepilogo di quanto svolto e con alcune considerazioni sugli sviluppi futuri.

Elaborazione di immagini aeree per il monitoraggio del territorio

A causa dei cambiamenti climatici sempre più frequentemente si verificano disastri ambientali come frane, alluvioni e incendi. Il suolo italiano risente particolarmente di questi eventi, considerati molto gravosi, sia in termini di vite umane che in senso economico. Una soluzione affidabile e con tempi di risposta veloci per il rilevamento delle frane potrebbe migliorare la prevenzione di questi fenomeni. I tradizionali metodi di rilevamento aereo possono richiedere ingenti risorse finanziarie e necessitano di una fase di pianificazione dei voli che rischia di essere incompatibile con i tempi di risposta richiesti. Una possibile alternativa per risolvere i problemi della raccolta di immagini tramite aerei ed elicotteri potrebbe essere basata sull’uso di droni con a bordo videocamere e l'applicazione di algoritmi in grado di elaborare immagini in tempi veloci per individuare le aree soggette a dissesto idrogeologico. Riguardo all'elaborazione delle immagini, sono stati recentemente introdotti degli algoritmi che sembrano promettenti per identificare in maniera quasi immediata le frane grazie a piattaforme aeree sia piloate che autonome. In questo elaborato di tesi si propongono i risultati ottenuti da prove svolte su un modello di reti convoluzionali denominato U-Net e si fa una valutazione della sua efficacia nel riconoscimento automatico delle frane. I risultati ottenuti suggeriscono che la presente implementazione della rete potrebbe, però, presentare criticità nell'individuazione di frane in un'immagine. Per gli sviluppi futuri, si suggerisce di modificare la rete convoluzionale, oppure di utilizzare banche dati differenti per l'allenamento dell'algoritmo.

Microbial Lipid Production: Screening With Yeasts Grown On Brazilian Molasses.

Rhodotorula glutinis CCT 2182, Rhodosporidium toruloides CCT 0783, Rhodotorula minuta CCT 1751 and Lipomyces starkeyi DSM 70296 were evaluated for the conversion of sugars from Brazilian molasses into single-cell oil (SCO) feedstock for biodiesel. Pulsed fed-batch fermentations were performed in 1.65 l working volume bioreactors. The maximum specific growth rate (µmax), lipid productivity (Pr) and cellular lipid content were, respectively, 0.23 h(-1), 0.41 g l(-1) h(-1), and 41% for Rsp. toruloides; 0.20 h(-1), 0.27 g l(-1) h(-1), and 36% for Rta. glutinis; 0.115 h(-1), 0.135 g l(-1) h(-1), and 27 % for Rta. minuta; and 0.11 h(-1), 0.13 g l(-1) h(-1), and 32% for L. starkeyi. Based on their microbial lipid productivity, content, and profile, Rsp. toruloides and Rta. glutinis are promising candidates for biodiesel production from Brazilian molasses. All the oils from the yeasts were similar to the composition of plant oils (rapeseed and soybean) and could be used as raw material for biofuels, as well as in food and nutraceutical products.

The Prevalence Of Tic Disorders In Children And Adolescents In Brazil.

Tourette syndrome (TS) and tic disorders represent events of familiar magnitude characterized by involuntary movements and/or vocalization. To determine the prevalence of TS/tic disorders we studied a sample of 762 subjects (388 M, 374 F), between 1992 and 1997, age 6 to 43 years old, taken out of a population of 10,155 subjects (4,918 M, 5,237 F; age: 3-56 years old). A structured 4-item questionnaire, direct interview (multistaged), >1 yr follow-up, were used. 9,565 subjects (4,614 M, 4,951 F) sent back the questionnaires, 3,354 of these (1,671 M, 1,683 F) with positive answers to tics. 42 subjects (31 M, 11 F, age: 7-21 years old, mean: 11 years old) met the DSM-III-R criteria. The total minimal prevalence of TS is 0.43%, with a 3:1 ratio male/female. The minimal prevalence of chronic tic disorder is 2.27%. The total minimal prevalence for tic disorders at all is 2.91%. No special education students participation.

Chromobacterium Amazonense Sp. Nov. Isolated From Water Samples From The Rio Negro, Amazon, Brazil.

The taxonomic position of a bacterium isolated from water samples from the Rio Negro, in Amazon, Brazil, was determined by using a polyphasic approach. The organism formed a distinct phyletic line in the Chromobacterium 16S rRNA gene tree and had chemotaxonomic and morphological properties consistent with its classification in this genus. It was found to be closely related to Chromobacterium vaccinii DSM 25150(T) (98.6 % 16S rRNA gene similarity) and shared 98.5 % 16S rRNA gene similarity with Chromobacterium piscinae LGM 3947(T). DNA-DNA relatedness studies showed that isolate CBMAI 310(T) belongs to distinct genomic species. The isolate was readily distinguished from the type strain of these species using a combination of phenotypic and chemotaxonomic properties. Thus, based on genotypic and phenotypic data, it is proposed that isolate CBMAI 310(T) (=DSM 26508(T)) be classified in the genus Chromobacterium as the type strain of a novel species, namely, Chromobacterium amazonense sp. nov.

Transtorno do déficit de atenção e hiperatividade: proposta de avaliação neuropsicológica para diagnóstico

Attention deficit hyperactivity disorder (ADHD) is characterized by a persistent pattern of inattention and/or hyperactivity/impulsivity. The aim of this research was to contribute more precisely to the diagnosis of ADHD, to propose a battery of neuropsychological assessment and to analyze the contribution of each test. We studied 10 matched pairs of children with ADHD and normal controls (7 to 11 years). Inclusion criteria were: presence of ADHD typical behavior, positive diagnosis of ADHD based on DSM-IV, normal IQ, normal neurological examination and parental consent. We used extensive neuropsychological battery. The results showed differential sensitivity for detection of attentional problems in children with ADHD, although most tests did not reach statistical significance. The item, errors, of WCST revealed statistically significant difference between the two groups: ADHD performance was inferior to controls . In conclusion the neuropsychological assessment battery used in this research contributed to the diagnosis of ADHD.

Metformina interage com o treinamento físico diminuindo a glicemia e aumentando o armazenamento de glicogênio em ratos diabéticos

INTRODUCTION: Like in humans, lower amounts of glycogen are present in tissues of diabetic rats. However, training or drugs that lower glycemia can improve the metabolic control. Metformin increased glycogen while decreased glycemia in normal rats stressed by exercise. OBJECTIVE: In this work we investigated if regular exercise and metformin effects improve the metabolism of diabetic rats. METHODS: Alloxan diabetic Wistar rats treated with metformin (DTM) or not (DT) were trained. Training consisted of 20 sessions of 30 min, 5 days a week. Sedentary diabetic rats served as control (SD and SDM). Metformin (5.6 µg/g) was given in the drinking water. After 48 h resting, glucose (mg/dl) and insulin (ng/mL) was measured in plasma and glycogen (mg/100 mg of wet tissue) in liver, soleus and gastrocnemius. RESULTS: Glycemia decreased in DM group from 435±15 to 230±20, in DT group to 143±8.1 and in DTM group to 138±19 mg/dl. DM group had proportional increase in the hepatic glycogen from 1.69±0.22 to 3.53±0.24, and the training increased to 3.36 ± 0.16 mg/100 mg. Metformin induced the same proportional increase in the muscles (soleus from 0.21±0.008 to 0.42±0.03 and gastrocnemius from 0.33±0.02 to 0.46±0.03), while the training promoted increase on gastrocnemius to 0,53 ± 0,03, only. A high interaction was observed in liver (glycogen increased to 6.48±0.34). CONCLUSION: Very small oral doses of metformin and/or, partially restored glycemia in diabetic rats and decreased glycogen in tissues. Its association with an exercise program was beneficial, helping lower glycemia further and increase glycogen stores on liver of diabetic rats.

Influence of psychopathologies on craniomandibular disorders

Psychopathologies play a role in the etiology and maintenance of craniomandibular disorders (CMD). In this study, the craniomandibular index was applied to valuate signs and symptoms of CMD in 60 dentate patients, who were assigned to 2 groups: symptomatic (n=35) and asymptomatic (n=25). An interview on psychopathologies was carried out with the aim to detect the presence of some mood disorders, such as depression, dysthymic and bipolar I disorders. Among these disturbances, depression was the most significant aspect to be reported (p<0.05) since it was present in most symptomatic patients. This important interaction was also significantly correlated (p<0.05) with the Palpation Index. These results suggest that psychopathological aspects could increase muscle tenderness and pain in addition to sleep dysfuntions and other physical complaints. Therefore, psychopathologies should be regarded as an important aspect in patients with orofacial pains.

Reaction time assessment in children with ADHD

Attention deficit, impulsivity and hyperactivity are the cardinal features of attention deficit hyperactivity disorder (ADHD) but executive function (EF) disorders, as problems with inhibitory control, working memory and reaction time, besides others EFs, may underlie many of the disturbs associated with the disorder. OBJECTIVE: To examine the reaction time in a computerized test in children with ADHD and normal controls. METHOD: Twenty-three boys (aged 9 to 12) with ADHD diagnosis according to Diagnostic and Statistical Manual of Mental Disorders, Fourth Edition, 2000 (DSM-IV) criteria clinical, without comorbidities, Intelligence Quotient (IQ) >89, never treated with stimulant and fifteen normal controls, age matched were investigated during performance on a voluntary attention psychophysical test. RESULTS: Children with ADHD showed reaction time higher than normal controls. CONCLUSION: A slower reaction time occurred in our patients with ADHD. This findings may be related to problems with the attentional system, that could not maintain an adequate capacity of perceptual input processes and/or in motor output processes, to respond consistently during continuous or repetitive activity.

Multideterminação do comportamento alimentar em humanos: um estudo de caso

Tradicionalmente o estudo da anorexia nervosa vem sendo pautado nos critérios diagnósticos trazidos dos manuais como o DSM, que priorizam a descrição topográfica dos comportamentos-problema, em que pouca ou quase nenhuma atenção se dá a sua funcionalidade nos contextos em que ocorrem. Humanos podem parar de comer sob o controle dos mais variados eventos, de modo que uma caracterização nosológica de caráter nomotético pode não ser suficiente na análise do fenômeno. O estudo de caso de um paciente do sexo masculino de 12 anos ilustra e elucida o debate, por apresentar características diagnósticas diferentes das usualmente relatadas na literatura.

Avaliação de traços de personalidade em pacientes com fobia social

CONTEXTO: Os sintomas de transtornos de personalidade (Eixo II) comumente encontrados em pacientes com fobia social se sobrepõem com os sintomas que descrevem o transtorno pelo Eixo I. OBJETIVO: O presente estudo teve por objetivo avaliar traços de personalidade em pacientes com diagnóstico de fobia social. MÉTODO: Cento e oito sujeitos com idade entre 18 e 65 anos foram avaliados pelo Inventário de Temperamento e Caráter de Cloninger. RESULTADO: Os pacientes com fobia social diferiram dos dados normativos nos seguintes traços de personalidade: Busca à Novidade, Fuga de Danos, Persistência, Autodirecionamento e Autotranscendência. CONCLUSÃO: Esses achados apontam para uma sobreposição entre a descrição dos traços de personalidade citados por Cloninger e a descrição dos sintomas de fobia social do DSM-IV, Eixo I.

Power Secant Method applied to natural frequency extraction of Timoshenko beam structures

This work deals with an improved plane frame formulation whose exact dynamic stiffness matrix (DSM) presents, uniquely, null determinant for the natural frequencies. In comparison with the classical DSM, the formulation herein presented has some major advantages: local mode shapes are preserved in the formulation so that, for any positive frequency, the DSM will never be ill-conditioned; in the absence of poles, it is possible to employ the secant method in order to have a more computationally efficient eigenvalue extraction procedure. Applying the procedure to the more general case of Timoshenko beams, we introduce a new technique, named ""power deflation"", that makes the secant method suitable for the transcendental nonlinear eigenvalue problems based on the improved DSM. In order to avoid overflow occurrences that can hinder the secant method iterations, limiting frequencies are formulated, with scaling also applied to the eigenvalue problem. Comparisons with results available in the literature demonstrate the strength of the proposed method. Computational efficiency is compared with solutions obtained both by FEM and by the Wittrick-Williams algorithm.

Cross-National Analysis of the Associations among Mental Disorders and Suicidal Behavior: Findings from the WHO World Mental Health Surveys

Background: Suicide is a leading cause of death worldwide. Mental disorders are among the strongest predictors of suicide; however, little is known about which disorders are uniquely predictive of suicidal behavior, the extent to which disorders predict suicide attempts beyond their association with suicidal thoughts, and whether these associations are similar across developed and developing countries. This study was designed to test each of these questions with a focus on nonfatal suicide attempts. Methods and Findings: Data on the lifetime presence and age-of-onset of Diagnostic and Statistical Manual of Mental Disorders, 4th Edition (DSM-IV) mental disorders and nonfatal suicidal behaviors were collected via structured face-to-face interviews with 108,664 respondents from 21 countries participating in the WHO World Mental Health Surveys. The results show that each lifetime disorder examined significantly predicts the subsequent first onset of suicide attempt (odds ratios [ORs] = 2.9-8.9). After controlling for comorbidity, these associations decreased substantially (ORs = 1.5-5.6) but remained significant in most cases. Overall, mental disorders were equally predictive in developed and developing countries, with a key difference being that the strongest predictors of suicide attempts in developed countries were mood disorders, whereas in developing countries impulse-control, substance use, and post-traumatic stress disorders were most predictive. Disaggregation of the associations between mental disorders and nonfatal suicide attempts showed that these associations are largely due to disorders predicting the onset of suicidal thoughts rather than predicting progression from thoughts to attempts. In the few instances where mental disorders predicted the transition from suicidal thoughts to attempts, the significant disorders are characterized by anxiety and poor impulse-control. The limitations of this study include the use of retrospective self-reports of lifetime occurrence and age-of-onset of mental disorders and suicidal behaviors, as well as the narrow focus on mental disorders as predictors of nonfatal suicidal behaviors, each of which must be addressed in future studies. Conclusions: This study found that a wide range of mental disorders increased the odds of experiencing suicide ideation. However, after controlling for psychiatric comorbidity, only disorders characterized by anxiety and poor impulse-control predict which people with suicide ideation act on such thoughts. These findings provide a more fine-grained understanding of the associations between mental disorders and subsequent suicidal behavior than previously available and indicate that mental disorders predict suicidal behaviors similarly in both developed and developing countries. Future research is needed to delineate the mechanisms through which people come to think about suicide and subsequently progress from ideation to attempts.

Orbitofrontal Cortex Volumes in Medication Naive Children with Major Depressive Disorder: A Magnetic Resonance Imaging Study

Objectives: Adults with major depressive disorder (MDD) are reported to have reduced orbitofrontal cortex (OFC) volumes, which could be related to decreased neuronal density. We conducted a study on medication naive children with MDD to determine whether abnormalities of OFC are present early in the illness course. Methods: Twenty seven medication naive pediatric Diagnostic and Statistical Manual of Mental Disorders, 4(th) edition (DSM-IV) MDD patients (mean age +/- SD = 14.4 +/- 2.2 years; 10 males) and 26 healthy controls (mean age +/- SD = 14.4 +/- 2.4 years; 12 males) underwent a 1.5T magnetic resonance imaging (MRI) with 3D spoiled gradient recalled acquisition. The OFC volumes were compared using analysis of covariance with age, gender, and total brain volume as covariates. Results: There was no significant difference in either total OFC volume or total gray matter OFC volume between MDD patients and healthy controls. Exploratory analysis revealed that patients had unexpectedly larger total right lateral (F = 4.2, df = 1, 48, p = 0.05) and right lateral gray matter (F = 4.6, df = 1, 48, p = 0.04) OFC volumes compared to healthy controls, but this finding was not significant following statistical correction for multiple comparisons. No other OFC subregions showed a significant difference. Conclusions: The lack of OFC volume abnormalities in pediatric MDD patients suggests the abnormalities previously reported for adults may develop later in life as a result of neural cell loss.