Molecular Phylogeny of Geographical Isolates of Bursaphelenchus xylophilus: Implications on the Origin and Spread of this Species in China and Worldwide

The genetic diversity and phylogeny of 26 isolates of Bursaphelenchus xlophilus from China, Japan, Portugal and North America were investigated based on the D2/3 domain of 28S rDNA, nuclear ribosomal Internal Transcribed Spacer (ITS) sequences, and random amplified polymorphic DNA (RAPD) analysis. The genetic diversity analysis showed that the D2/3 domain of 28S rDNA of isolates of B. xlophilus from China, Portugal, Japan and the US were identical and differed at one to three nucleotides compared to those from Canada. ITS sequences of isolates from China and Portugal were the same; they differed at one or two nucleotides compared to those of Japanese isolates and at four and 23 nucleotides compared to those front the US and Canada, respectively. The phylogenetic analysis indicated that Chinese isolates share a common ancestor with one of the two Japanese clades and that the Canadian isolates form a sister group of the clade comprised of isolates from China, Portugal,Japan, and the US. The relationship between Japanese isolates and those from China was closer than with the American isolates. The Canadian isolates were the basal group of B. xylophilus. This suggests that B. xlophilus originated in North America and that the B. xylphilus that occurs in China could have been first introduced from Japan. Further analysis based on RAPD analysis revealed that the relationship among isolates from Guangdong, Zhejiang, Shandong, Anhui provinces and Nanjing was the closest, which suggests that pine wilt disease in these Chinese locales was probably dispersed from Nanjing, where this disease first occurred in China.

Emigration dynamics of three species of penaeid prawn from backwaters and tidal ponds of Cochin, India

Emigration of three species of penaeid prawn from backwaters and tidal ponds were studied. Considerable diel, tidal, lunar and seasonal fluctuations were observed in emigration process, which was almost nocturnal. Rate of emigration and composition of emigrants varied with time of migration. Large pulses of emigration always coincided with spring tides with major peak during new moon. Seasonal variation was observed with peak emigration of Penaeus indicus during monsoon months and that of Metapenaeus dobsoni and Metapenaeus monoceros during pre-monsoon. Rate of emigration was relatively large from shallow tidal ponds. It correlated directly with the prevailing environmental conditions and juvenile density. Instantaneous rate of emigration was also large in seasonal ponds. The basic stimulus for emigration is the urge for sexual maturation. Coupled with it ecological changes in the habitat have been causing various patterns in migration.

Standing stock of three species of demersal fishes from southwest coast of India

Standing stock of three principal demersal fishes of the inshore waters off Mangalore was assessed. The assessment was based on fortnightly samplings conducted in an area extending over ca 850 km². The data gathered was computed employing Alverson's methods. The standing stock of Nemipterus japonicus, Saurida tumbil and Grammoplites scaber indicates that this area supports good quantities of these fishes and if properly exploited, will sustain a profitable demersal fishery.

Fatty acid composition of three species of freshwater fishes

Fatty acid composition of freshwater fish tilapia, (Tilapia mosambica), barbus (Barbus carnaticus) and Varal (Ophicephalus) is determined by gas-liquid chromatography. Varal contained the highest amount of C sub(20:5) acid compared to other 2 spp. Of the odd-numbered fatty acids C sub(17) was the predominant fatty acid present. Palmitic acid was found to have a lower level in these fish compared to marine fish. Barbus recorded unusually high percentage of 23.3% of C sub(18:2) acid.

A study on the average yield of different species pf prawns used for freezing and canning

The paper deals with the average yield of four spp of prawns viz. Metapenaeus dobsoni, Metapenaeus affinis, Parapenaeopsis stylifera and Penaeus indicus on conversion to peeled and deveined (PD), cooked and peeled (CP) and head less shell on (HL) forms in the different months of a year and the likely variations observed in the average yield.

Proximate composition of 17 species of Indian fish

Miscellaneous fish from the catches of shrimp trawlers constitute a major portion of the marine fish catch in India, its quantity in annual landing being of the order of 50,000 tons. At present it is often not brought to the shore since it fetches only very low price. It consists of several species and is a cheap source of animal protein. Attempts are made in India in various centres (Anon. 1972-73) to utilise them effectively by formulating various speciality products acceptable to consumers.

Molecular phylogenetic systematics of twelve species of acipenseriformes based on mtDNA ND4L-ND4 gene sequence analysis

Acipenseriformes is an endangered primitive fish group, which occupies a special place in the history of ideas concerning fish evolution, even in vertebrate evolution. However, the classification and evolution of the fishes have been debated. The mitochondrial DNA (mtDNA) ND4L and partial ND4 genes were first sequenced in twelve species of the order Acipenseriformes, including endemic Chinese species. The following points were drawn from DNA sequences analysis: (i) the two species of Huso can be ascribed to Acipenser; (ii) A. dabryanus is the mostly closely related to A. sinensis, and most likely the landlocked form of A. sinensis; (iii) genus Acipenser in trans-Pacific region might have a common origin; (iv) mtDNA ND4L and ND4 genes are the ideal genetic markers for phylogenetic analysis of the order Acipenseriformes.

Characterization of Sarcocystis species in domestic animals using a PCR-RFLP analysis of variation in the 18S rRNA gene: a cost-effective and simple technique for routine species identification

Thirteen restriction endonucleases were used to investigate nucleotide sequence variation in the 18S rRNA DNA of 88 individuals from ten Sarcocystis taxa collected as cysts from their intermediate hosts, swine, cattle and water buffalo. A DNA sequence of

A phylogeny of Chinese species in the genus Phrynocephalus (Agamidae) inferred from mitochondrial DNA sequences

We investigated the phylogenetic relationships among most Chinese species of lizards in the genus Phrynocephalus (118 individuals, collected from 56 populations of 14 well-defined species and several unidentified specimens) using four mitochondrial gene fragments (12S rRNA, 16S rRNA, cytochrome b, and ND4-tRNA(LEU)). The partition-homogeneity tests indicated that the combined dataset was homogeneous, and maximum-parsimony (MP), neighbor-joining (NJ), maximum-likelihood (ML) and Bayesian (BI) analyses were performed on this combined dataset (49 haplotypes including outgroups for 2058 bp in total). The maximum-parsimony analysis resulted in 24 equally parsimonious trees, and their strict consensus tree shows that there are two major clades representing the Chinese Phrynocephalus species: the viviparous group (Clade A) and the oviparous group (Clade B). The trees derived from Bayesian, ML. and NJ analyses were topologically identical to the MP analysis except for the position of P. mystaceus. All analyses left the nodes for the oviparous group, the most basal clade within the oviparous group, and P. mystaceus unresolved. The phylogenies further suggest that the monophyly of the viviparous species may have resulted from vicariance, while recent dispersal may have been important in generating the pattern of variation among the oviparous species. (C) 2003 Elsevier Science (USA). All rights reserved.

Lipid distribution in body and skin of four species of marine fish

The paper presents results of a study on the analytical characteristics of lipids from the skin and muscle of four important species of Gujarat coast fishes. Changes in characteristics like saponification value, iodine value and unsaponifiable matter of these lipids during different months of the year are also reported.

Proximate composition of five species of flat fishes

Five species of flat fishes, namely Cynoglossus semifaciatus, C. lida, C. bilineatus, C. macrolepidotus and Psettodes erumei caught in trawlers off Mangalore were analysed for proximate composition of different body parts. These data are discussed in terms of their variability and applications. In whole body of C. lida and C. semifaciatus mean values for moisture, protein, fat and ash content on dry basis respectively were 75.9%, 75.3%, 7.1%, 16.1% and 78.9%, 75.6%. 7.9% and 16.6%. Mean values of these constituents of edible parts in the same order for C. semifaciatus and Psettodes erumei were 77.3%, 80.7%, 7.8%, 10.8% and 77.4%, 86.2%, 3.5% and 11.1% respectively.

Observations on the durability of fifteen species of CCA treated timber in the Cochin harbour

Observations on the durability of fifteen species of common Indian timber treated with CCA at two absorption levels, for eight years are presented. CCA treatment has improved the durability of this timber to a great extent. T. grandis, D. indicus and X. xylocarpa give maximum durability on treatment with CCA. Less durable A. kurzi, T. nudiflora and P. longifolia when treated with CCA showed results comparable to the best species.

The complete mitochondrial genomes of two species from Sinocyclocheilus (Cypriniformes: Cyprinidae) and a phylogenetic analysis within Cyprininae

We determined the complete mitochondrial DNA sequences for two species of surface- and cave-dwelling-cyprinid fishes, Sinocyclocheilus grahami and S. altishoulderus. Sequence comparison of 13 protein-coding genes shows that the mutation pattern of each single gene is quite similar to those of other vertebrate animal species. Analysis of the ratios of Ka/Ks at these loci between Sinocyclocheilus and two other cyprinid species (Cyprinus carpio and Procypris rabaudi) show that Ka/Ks ratios are differed, consistent with purifying selection and variation in functional constraint among genes. Bayesian analysis and maximum likelihood analysis of the concatenated mitochondrial protein sequences for 14 cyprinid taxa support the monophyly of the family Cyprininae, and further confirm the monophyly of the genus Sinocyclocheilus. The two Sinocyclocheilus species fall within the Cyprinion-Onychostoma lineage, including Cyprinus, Carassius, and Procypris, rather than among the Barbinae, as previously suggested on morphological grounds.

Succession of bacterial genera during iced storage of three species of tropical prawns, Penaeus indicus, Matapenaeus dobsoni and M. affinis

The native bacterial flora of ocean fresh tropical prawns, Penaeus indicus, Metapenaeus dobsoni and M. affinis was more or less similar, mainly consisting of Pseudomonas, Acinetobacter, Moraxella and Arthrobacter. A definite succession of bacterial genera during iced storage was observed in these prawns. As the day of ice storage increased, the proportion of Acinetobacter and Moraxella also increased considerably and constituted 70-78% of the flora at the time of spoilage. Spoilage by Pseudomonas was very not significant in prawns under iced storage.