The ecoclimatology of Danum, Sabah, in the context of the world's rainforest regions, with particular reference to dry periods and their impact

Climatic records for Danum for 1985 to 1998, elsewhere in Sabah since 1879, and long monthly rainfall series from other rainforest locations are used to place the climate, and particularly the dry period climatology, of Danum into a world rainforest context. The magnitude frequency and seasonality of dry periods are shown to vary greatly within the world's rainforest zone. The climate of Danum, which is aseasonal but subject, as in 1997 to 1998, to occasional drought, is intermediate between less drought–prone north–western Borneo and the more drought–prone east coast. Changes through time in drought magnitude frequency in Sabah and rainforest locations elsewhere in South–East Asia and in the Neotropics are compared. The 1997 to 1998 ENSO–related drought event in Sabah is placed into a historical context. The effects of drought on tree growth and mortality in the tropics are assessed and a model relating intensity and frequency of drought disturbance to forest structure and composition is discussed.

Magnetostratigraphy of ODP Leg 207 sediments

Ocean Drilling Program (ODP) Sites 1257-1261 recovered thick sections of Upper Cretaceous-Eocene oceanic sediments on Demerara Rise off the east coast of Surinam and French Guiana, South America. Paleomagnetic and rock magnetic measurements of ~800 minicores established a high-resolution composite magnetostratigraphy spanning most of the Maastrichtian-Eocene. Magnetic behavior during demagnetization varied among lithologies, but thermal demagnetization steps >200°C were generally successful in removing present-day normal polarity overprints and a downward overprint induced during the ODP coring process. Characteristic remanent magnetizations and associated polarity interpretations were generally assigned to directions observed at 200°-400°C, and the associated polarity interpretations were partially based on whether the characteristic direction was aligned or apparently opposite to the low-temperature "north-directed" overprint. Biostratigraphy and polarity patterns constrained assignment of polarity chrons. The composite sections have a complete polarity record of Chrons C18n (middle Eocene)-C34n (Late Cretaceous).

(Table S2) Cell concentrations of individual and combined Alexandrium spp. and phylogenetic groups as obtained by qPCR assay and Utermöhl counts, as well as particulate PSP toxin concentrations from discrete water depths

Molecular methods provide promising tools for routine detection and quantification of toxic microalgae in plankton samples. To this end, novel TaqMan minor groove binding probes and primers targeting the small (SSU) or large (LSU) ribosomal subunit (rRNA) were developed for two species of the marine dinoflagellate genus Alexandrium (A. minutum, A. tamutum) and for three groups/ribotypes of the A. tamarense species complex: Group I/North American (NA), Group II/Mediterranean (ME) and Group III/Western European (WE). Primers and probes for real-time quantitative PCR (qPCR) were species-specific and highly efficient when tested in qPCR assays for cross-validation with pure DNA from cultured Alexandrium strains. Suitability of the qPCR assays as molecular tools for the detection and estimation of relative cell abundances of Alexandrium species and groups was evaluated from samples of natural plankton assemblages along the Scottish east coast. The results were compared with inverted microscope cell counts (Utermöhl technique) of Alexandrium spp. and associated paralytic shellfish poisoning (PSP) toxin concentrations. The qPCR assays indicated that A. tamarense (Group I) and A. tamutum were the most abundant Alexandrium taxa and both were highly positively correlated with PSP toxin content of plankton samples. Cells of A. tamarense (Group III) were present at nearly all stations but in low abundance. Alexandrium minutum and A. tamarense (Group II) cells were not detected in any of the samples, thereby arguing for their absence from the specific North Sea region, at least at the time of the survey. The sympatric occurrence of A. tamarense Group I and Group III gives further support to the hypothesis that the groups/ribotypes of the A. tamarense species complex are cryptic species rather than variants belonging to the same species.

Calcareous nannofossil species richness across the Paleocene-Eocene Thermal Maximum

The Paleocene-Eocene Thermal Maximum (PETM, ~5 million years ago) was an interval of global warming and ocean acidification attributed to rapid release and oxidation of buried carbon. We show that the onset of the PETM coincided with a prominent increase in the origination and extinction of calcareous phytoplankton. Yet major perturbation of the surface-water saturation state across the PETM was not detrimental to the survival of most calcareous nannoplankton taxa and did not impart a calcification or ecological bias to the pattern of evolutionary turnover. Instead, the rate of environmental change appears to have driven turnover, preferentially affecting rare taxa living close to their viable limits.

(Table 1) GRACE-derived mass balance of the Greenland ice sheet 2002-2010

We re-evaluate the Greenland mass balance for the recent period using low-pass Independent Component Analysis (ICA) post-processing of the Level-2 GRACE data (2002-2010) from different official providers (UTCSR, JPL, GFZ) and confirm the present important ice mass loss in the range of -70 and -90 Gt/y of this ice sheet, due to negative contributions of the glaciers on the east coast. We highlight the high interannual variability of mass variations of the Greenland Ice Sheet (GrIS), especially the recent deceleration of ice loss in 2009-2010, once seasonal cycles are robustly removed by Seasonal Trend Loess (STL) decomposition. Interannual variability leads to varying trend estimates depending on the considered time span. Correction of post-glacial rebound effects on ice mass trend estimates represents no more than 8 Gt/y over the whole ice sheet. We also investigate possible climatic causes that can explain these ice mass interannual variations, as strong correlations between GRACE-based mass balance and atmosphere/ocean parallels are established: (1) changes in snow accumulation, and (2) the influence of inputs of warm ocean water that periodically accelerate the calving of glaciers in coastal regions and, feed-back effects of coastal water cooling by fresh currents from glaciers melting. These results suggest that the Greenland mass balance is driven by coastal sea surface temperature at time scales shorter than accumulation.

Cretaceous radiolarians of the North Atlantic Ocean

Radiolarians form a remarkable part of the fossil plankton for Cretaceous sediments of the North Atlantic. Selected sites with long-term sedimentary successions of deep facies were studied (ODP Leg 103 and DSDP Site 398 off northwest Spain and DSDP Site 603 off the east coast of the United States). Preservation of the radiolarian faunas is generally poor, and the faunal abundance and diversity reflect the diagenetic history of the host sediment rather than the original faunal productivity. Several exceptions include abundant and some well-preserved radiolarian faunas from lower Campanian, Cenomanian/Turonian boundary, upper Albian, lower Albian, and Barremian sediments. These increases in radiolarian abundance and preservation coincide with well-established Cretaceous oceanic events in the North Atlantic. Typical faunal associations of these sections are described, and faunal associations from the Cenomanian/Turonian Boundary Event are documented for the first time in the North Atlantic. The relationship of the radiolarian blooms with coeval oceanic events in the North Atlantic is also discussed.

Surface in situ measurements of atmospheric CO, CH4, and CO2 combined with selected meteorological measurements at the University of Wollongong, Australia

Wollongong, Australia is an urban site at the intersection of anthropogenic, biomass burning, biogenic and marine sources of atmospheric trace gases. The location offers a valuable opportunity to study drivers of atmospheric composition in the Southern Hemisphere. Here, a record of surface carbon monoxide (CO), methane (CH4) and carbon dioxide (CO2) was measured with an in situ Fourier transform infrared trace gas analyser between April 2011 and August 2014. Clean air was found to arrive at Wollongong in approximately 10% of air masses. Biomass burning influence was evident in the average annual cycle of clean air CO during austral spring. A significant negative short-term trend was found in clean air CO (-1.5 nmol/mol/a), driven by a reduction in northern Australian biomass burning. Significant short-term positive trends in clean air CH4 (5.4 nmol/mol/a) and CO2 (1.9 ?mol/mol/a) were consistent with the long-term global average trends. Polluted Wollongong air was investigated using wind-direction/wind-speed clustering, which revealed major influence from local urban and industrial sources from the south. High values of CH4, with anthropogenic DCH4/DCO2 enhancement ratio signatures, originated from the northwest, in the direction of local coal mining. A pollution climatology was developed for the region using back trajectory analysis and DO3/DCO enhancement ratios. Ozone production environments in austral spring and summer were associated with anticyclonic meteorology on the east coast of Australia, while ozone depletion environments in autumn and winter were associated with continental transport, or fast moving trajectories from southern latitudes. This implies the need to consider meteorological conditions when developing policies for controlling air quality.

Isotope ratios, trace elements and ultrastructure results of Mytilus galloprovincialis shells and experimental site data off Ischia (Italy)

Bivalve shells can provide excellent archives of past environmental change but have not been used to interpret ocean acidification events. We investigated carbon, oxygen and trace element records from different shell layers in the mussels Mytilus galloprovincialis combined with detailed investigations of the shell ultrastructure. Mussels from the harbour of Ischia (Mediterranean, Italy) were transplanted and grown in water with mean pHT 7.3 and mean pHT 8.1 near CO2 vents on the east coast of the island. Most prominently, the shells recorded the shock of transplantation, both in their shell ultrastructure, textural and geochemical record. Shell calcite, precipitated subsequently under acidified seawater responded to the pH gradient by an in part disturbed ultrastructure. Geochemical data from all test sites show a strong metabolic effect that exceeds the influence of the low-pH environment. These field experiments showed that care is needed when interpreting potential ocean acidification signals because various parameters affect shell chemistry and ultrastructure. Besides metabolic processes, seawater pH, factors such as salinity, water temperature, food availability and population density all affect the biogenic carbonate shell archive.

Diatom stratigraphy of ODP Leg 150 holes

Diatoms are present in middle to lower upper Miocene sections of all holes examined during Leg 150, but are generally absent or in low abundance in Pleistocene to middle upper Miocene sediments. An exception is the alternating diatom-rich, diatom-poor intervals in upper Quaternary sediments. Five new diatom zones, covering an interval from near the lower/middle Miocene boundary to the lower upper Miocene, are proposed. Some of the taxon used to define these zones are also used in zonal schemes for the East Coast of the United States, and allow for correlations to be drawn between this region and Leg 150 sites. Lower Miocene and older levels are not included in this study. Although older Tertiary diatoms are present at some of the sites, dissolution has largely compromised their usefulness as zonal markers.

Glacier mass balance measurements on Fourcade and Polar Club glacier, King George Island

The east coast of the AP is highly influenced by cold and dry air masses stemming from the adjacent Weddell Sea. By the contrary, the west coast jointly with the South Shetland Islands are directly exposed to the humid and relatively warm air masses from the South Pacific Ocean carried by the strong and persistent westerly winds. Systematic glaciological field studies are very scarce on both sides of the AP, among them can be mentioned a mass-balance program performed continuously since summer 1998/99 by the Instituto Antártico Argentino (IAA) on Vega Island, James Ross Archipelago, on the northeastern flank of the AP. Another continuous plurianual glaciological research has been initiated in 2010 jointly by the University of Bonn and the IAA at the Fourcade Glacier on King George Island (KGI) within the framework of the ESF project IMCOAST (FK 03F0617B). Two transects of mass balance stakes were installed from the top of the Warszawa Ice Dome down to the border of the glaciers Fourcade and Polar Club, to serve for calibration and validation of modeling efforts. The stakes were measured at the beginning and end of each summer field campaign in November 2010, February - March 2011, January - March 2012, and especially during the austral winter 2012 up to March 2013 every 10 to 14 days depending on weather conditions. During the austral winter 2013 and until June 2014 the measurements were conducted every 20 to 30 days, weather permitting. Snow density was measured as well in every field trip from June 2012 until June 2104, establishing a rather homogeneous value along the different parts of the glacier. Snow density in late summer, rho_s is usually higher than the one in late winter, rho_w. Seasonal average values were calculated for the area covered by the mass balance stakes, being rho_s= 471 Kg/m**3 and rho_w = 363 Kg/m**3.

Literature review of elasmobranch bycatch and retention rate

To address growing concern over the effects of fisheries non-target catch on elasmobranchs worldwide, the accurate reporting of elasmobranch catch is essential. This requires data on a combination of measures, including reported landings, retained and discarded non-target catch, and post-discard survival. Identification of the factors influencing discard vs. retention is needed to improve catch estimates and to determine wasteful fishing practices. To do this we compared retention rates of elasmobranch non-target catch in a broad subset of fisheries throughout the world by taxon, fishing country, and gear. A regression tree and random forest analysis indicated that taxon was the most important determinant of retention in this dataset, but all three factors together explained 59% of the variance. Estimates of total elasmobranch removals were calculated by dividing the FAO global elasmobranch landings by average retention rates and suggest that total elasmobranch removals may exceed FAO reported landings by as much as 400%. This analysis is the first effort to directly characterize global drivers of discards for elasmobranch non-target catch. Our results highlight the importance of accurate quantification of retention and discard rates to improve assessments of the potential impacts of fisheries on these species.